RNA–Protein interactions for RNA: ENST00000551655.1

VPS29-209, Transcript of VPS29, retromer complex component, humanhuman

TSL 5

Gene VPS29, Length 766 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-209ENST00000551655 HIGD1BQ9P298 99 aa5.73□□□□□ -1.49
VPS29-209ENST00000551655 HCG22E2RYF7 251 aa5.72□□□□□ -1.49
VPS29-209ENST00000551655 KRTAP15-1Q3LI76 137 aa5.72□□□□□ -1.49
VPS29-209ENST00000551655 HIST3H2BBQ8N257 126 aa5.72□□□□□ -1.49
VPS29-209ENST00000551655 MT4P47944 62 aa5.71□□□□□ -1.5
VPS29-209ENST00000551655 KRTAP10-12P60413 245 aa5.7□□□□□ -1.5
VPS29-209ENST00000551655 COX6CP09669 75 aa5.68□□□□□ -1.5
VPS29-209ENST00000551655 NREPQ16612 68 aa5.68□□□□□ -1.5
VPS29-209ENST00000551655 BAALC-AS2P0C853 105 aa5.67□□□□□ -1.5
VPS29-209ENST00000551655 LOC110117498A0A087WWA1 95 aa5.64□□□□□ -1.51
VPS29-209ENST00000551655 PDE6GP18545 87 aa5.64□□□□□ -1.51
VPS29-209ENST00000551655 S100A2P29034 98 aa5.64□□□□□ -1.51
VPS29-209ENST00000551655 A0A1B0GW54 56 aa5.63□□□□□ -1.51
VPS29-209ENST00000551655 TMA7Q9Y2S6 64 aaKnown RBP5.63□□□□□ -1.51
VPS29-209ENST00000551655 KRTAP5-7Q6L8G8 165 aa5.62□□□□□ -1.51
VPS29-209ENST00000551655 CASC2Q6XLA1 102 aa5.62□□□□□ -1.51
VPS29-209ENST00000551655 CXCL6P80162 114 aa5.61□□□□□ -1.51
VPS29-209ENST00000551655 Q8N9L7 120 aa5.61□□□□□ -1.51
VPS29-209ENST00000551655 C14orf132Q9NPU4 83 aa5.61□□□□□ -1.51
VPS29-209ENST00000551655 PAM16Q9Y3D7 125 aa5.61□□□□□ -1.51
VPS29-209ENST00000551655 ADM2Q7Z4H4 148 aa5.6□□□□□ -1.51
VPS29-209ENST00000551655 SPATA45Q537H7 98 aa5.59□□□□□ -1.51
VPS29-209ENST00000551655 H0YAA0 97 aa5.57□□□□□ -1.52
VPS29-209ENST00000551655 JMJD7-PLA2G4BH0Y9G9 81 aa5.56□□□□□ -1.52
VPS29-209ENST00000551655 SCGB1C2P0DMR2 95 aa5.56□□□□□ -1.52
VPS29-209ENST00000551655 SPRR5A0A1B0GTR4 108 aa5.52□□□□□ -1.53
VPS29-209ENST00000551655 BPY2O14599 106 aa5.52□□□□□ -1.53
VPS29-209ENST00000551655 KRTAP19-3Q7Z4W3 81 aa5.48□□□□□ -1.53
VPS29-209ENST00000551655 HSD52Q0P140 79 aa5.47□□□□□ -1.53
VPS29-209ENST00000551655 VAMP8Q9BV40 100 aa5.47□□□□□ -1.53
VPS29-209ENST00000551655 R4GN34 69 aa5.47□□□□□ -1.53
VPS29-209ENST00000551655 NDUFC1O43677 76 aa5.45□□□□□ -1.54
VPS29-209ENST00000551655 LINC01554Q52M75 96 aa5.44□□□□□ -1.54
VPS29-209ENST00000551655 K7EP34 96 aa5.43□□□□□ -1.54
VPS29-209ENST00000551655 M0QZ58 72 aa5.43□□□□□ -1.54
VPS29-209ENST00000551655 KRTAP19-7Q3SYF9 63 aa5.43□□□□□ -1.54
VPS29-209ENST00000551655 CYSTM1Q9H1C7 97 aa5.43□□□□□ -1.54
VPS29-209ENST00000551655 ATXN8Q156A1 80 aa5.42□□□□□ -1.54
VPS29-209ENST00000551655 P0C880 135 aa5.41□□□□□ -1.54
VPS29-209ENST00000551655 MT1EP04732 61 aa5.4□□□□□ -1.54
VPS29-209ENST00000551655 S100A6P06703 90 aa5.39□□□□□ -1.55
VPS29-209ENST00000551655 NAA38Q9BRA0 125 aaKnown RBP5.37□□□□□ -1.55
VPS29-209ENST00000551655 CYP4F30PQ9H0H9 118 aa5.37□□□□□ -1.55
VPS29-209ENST00000551655 KRTAP5-4Q6L8H1 288 aa5.35□□□□□ -1.55
VPS29-209ENST00000551655 S100A1P23297 94 aa5.3□□□□□ -1.56
VPS29-209ENST00000551655 KRTAP5-6Q6L8G9 129 aaPredicted RBP5.26□□□□□ -1.57
VPS29-209ENST00000551655 TP53AIP1Q9HCN2 124 aa5.26□□□□□ -1.57
VPS29-209ENST00000551655 MT1GP13640 62 aa5.23□□□□□ -1.57
VPS29-209ENST00000551655 C20orf197Q8N268 126 aa5.21□□□□□ -1.58
VPS29-209ENST00000551655 MT1MQ8N339 61 aa5.2□□□□□ -1.58
VPS29-209ENST00000551655 KRTAP4-3Q9BYR4 195 aa5.2□□□□□ -1.58
VPS29-209ENST00000551655 BATFQ16520 125 aa5.18□□□□□ -1.58
VPS29-209ENST00000551655 LOC101927531A0A1B0GV80 90 aa5.17□□□□□ -1.58
VPS29-209ENST00000551655 ACYP1P07311 99 aa5.17□□□□□ -1.58
VPS29-209ENST00000551655 PP632Q6XCG6 107 aa5.16□□□□□ -1.58
VPS29-209ENST00000551655 TRAV22A0A0B4J277 110 aa5.15□□□□□ -1.59
VPS29-209ENST00000551655 UQCR10Q9UDW1 63 aa5.14□□□□□ -1.59
VPS29-209ENST00000551655 KRTAP20-2Q3LI61 65 aa5.13□□□□□ -1.59
VPS29-209ENST00000551655 TSTD3H0UI37 97 aa5.12□□□□□ -1.59
VPS29-209ENST00000551655 KRTAP19-5Q3LI72 72 aa5.11□□□□□ -1.59
VPS29-209ENST00000551655 PYY3Q5JQD4 70 aa5.11□□□□□ -1.59
VPS29-209ENST00000551655 MT-ATP8P03928 68 aa5.1□□□□□ -1.59
VPS29-209ENST00000551655 H3BT86 120 aa5.08□□□□□ -1.6
VPS29-209ENST00000551655 A0A1W2PPM0 123 aa5.07□□□□□ -1.6
VPS29-209ENST00000551655 SPCS1Q9Y6A9 102 aa5.07□□□□□ -1.6
VPS29-209ENST00000551655 UBL5Q9BZL1 73 aa5.06□□□□□ -1.6
VPS29-209ENST00000551655 AHNAKQ09666 5890 aaKnown RBP5.06□□□□□ -1.6
VPS29-209ENST00000551655 MT1LQ93083 61 aa5.04□□□□□ -1.6
VPS29-209ENST00000551655 KRTAP5-11Q6L8G4 156 aa5.01□□□□□ -1.61
VPS29-209ENST00000551655 MUC5ACP98088 5654 aa4.99□□□□□ -1.61
VPS29-209ENST00000551655 H0Y9P7 68 aa4.97□□□□□ -1.61
VPS29-209ENST00000551655 M0R143 59 aa4.95□□□□□ -1.62
VPS29-209ENST00000551655 A0A0D9SG42 100 aa4.93□□□□□ -1.62
VPS29-209ENST00000551655 CAMK2N1Q7Z7J9 78 aa4.93□□□□□ -1.62
VPS29-209ENST00000551655 MUC5BQ9HC84 5762 aaPredicted RBP4.92□□□□□ -1.62
VPS29-209ENST00000551655 ATOX1O00244 68 aa4.88□□□□□ -1.63
VPS29-209ENST00000551655 UQCRQO14949 82 aa4.86□□□□□ -1.63
VPS29-209ENST00000551655 SYNE1Q8NF91 8797 aaKnown RBP4.83□□□□□ -1.64
VPS29-209ENST00000551655 LINC00208Q96KT6 92 aa4.83□□□□□ -1.64
VPS29-209ENST00000551655 KRTAP12-4P60329 112 aa4.82□□□□□ -1.64
VPS29-209ENST00000551655 KRTAP5-5Q701N2 237 aaPredicted RBP4.82□□□□□ -1.64
VPS29-209ENST00000551655 TAX1BP3O14907 124 aa4.79□□□□□ -1.64
VPS29-209ENST00000551655 KRTAP13-4Q3LI77 160 aa4.78□□□□□ -1.64
VPS29-209ENST00000551655 KRTAP5-8O75690 187 aa4.77□□□□□ -1.65
VPS29-209ENST00000551655 DMAC1Q96GE9 116 aa4.76□□□□□ -1.65
VPS29-209ENST00000551655 C10orf95Q9H7T3 257 aa4.71□□□□□ -1.66
VPS29-209ENST00000551655 PRO0461Q9UI25 63 aa4.69□□□□□ -1.66
VPS29-209ENST00000551655 HIST1H4AP62805 103 aaKnown RBP4.65□□□□□ -1.67
VPS29-209ENST00000551655 LCE3AQ5TA76 89 aa4.64□□□□□ -1.67
VPS29-209ENST00000551655 MP68P56378 58 aa4.61□□□□□ -1.67
VPS29-209ENST00000551655 LCE1EQ5T753 118 aa4.61□□□□□ -1.67
VPS29-209ENST00000551655 TRAV7A0A075B6U4 112 aa4.58□□□□□ -1.68
VPS29-209ENST00000551655 OBSCNQ5VST9 7968 aa4.58□□□□□ -1.68
VPS29-209ENST00000551655 KRTAP5-2Q701N4 177 aa4.57□□□□□ -1.68
VPS29-209ENST00000551655 OCR1Q9BZK8 76 aa4.53□□□□□ -1.68
VPS29-209ENST00000551655 SPTSSBQ8NFR3 76 aa4.51□□□□□ -1.69
VPS29-209ENST00000551655 KRTAP5-1Q6L8H4 278 aa4.5□□□□□ -1.69
VPS29-209ENST00000551655 SPINT4Q6UDR6 99 aa4.49□□□□□ -1.69
VPS29-209ENST00000551655 SVIPQ8NHG7 77 aa4.49□□□□□ -1.69
VPS29-209ENST00000551655 ETDBQ3ZM63 59 aa4.47□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms