RNA–Protein interactions for RNA: ENST00000549578.5

VPS29-206, Transcript of VPS29, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS29, Length 1,523 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-206ENST00000549578 KRTAP9-8Q9BYQ0 159 aa10.14□□□□□ -0.79
VPS29-206ENST00000549578 MT2AP02795 61 aa10.07□□□□□ -0.8
VPS29-206ENST00000549578 CSAG1Q6PB30 78 aa10.07□□□□□ -0.8
VPS29-206ENST00000549578 CYSTM1Q9H1C7 97 aa10.06□□□□□ -0.8
VPS29-206ENST00000549578 SPANXA2-OT1Q8N9U9 137 aa10.04□□□□□ -0.8
VPS29-206ENST00000549578 LOC100996750A0A140TA64 210 aa10.02□□□□□ -0.8
VPS29-206ENST00000549578 KRTAP4-6Q9BYQ5 205 aa10.02□□□□□ -0.8
VPS29-206ENST00000549578 NDUFC1O43677 76 aa10.02□□□□□ -0.81
VPS29-206ENST00000549578 CCDC179H3BU77 68 aa10.01□□□□□ -0.81
VPS29-206ENST00000549578 MT1FP04733 61 aa10□□□□□ -0.81
VPS29-206ENST00000549578 ACYP2P14621 99 aa9.99□□□□□ -0.81
VPS29-206ENST00000549578 H7BZZ5 65 aa9.98□□□□□ -0.81
VPS29-206ENST00000549578 KRTAP10-10P60014 251 aa9.96□□□□□ -0.82
VPS29-206ENST00000549578 KRTAP9-2Q9BYQ4 174 aa9.87□□□□□ -0.83
VPS29-206ENST00000549578 CHKB-CPT1BH3BT56 60 aa9.83□□□□□ -0.84
VPS29-206ENST00000549578 KRTAP9-3Q9BYQ3 159 aa9.8□□□□□ -0.84
VPS29-206ENST00000549578 COA5Q86WW8 74 aa9.76□□□□□ -0.85
VPS29-206ENST00000549578 H0YAA0 97 aa9.75□□□□□ -0.85
VPS29-206ENST00000549578 SPTSSBQ8NFR3 76 aa9.74□□□□□ -0.85
VPS29-206ENST00000549578 ADM2Q7Z4H4 148 aa9.72□□□□□ -0.85
VPS29-206ENST00000549578 ATP5EP56381 51 aaPredicted RBP9.63□□□□□ -0.87
VPS29-206ENST00000549578 TMEM258P61165 79 aa9.62□□□□□ -0.87
VPS29-206ENST00000549578 P0C880 135 aa9.59□□□□□ -0.87
VPS29-206ENST00000549578 KRTAP19-1Q8IUB9 90 aa9.58□□□□□ -0.88
VPS29-206ENST00000549578 USH2AO75445 5202 aa9.57□□□□□ -0.88
VPS29-206ENST00000549578 FSIP2Q5CZC0 6907 aa9.57□□□□□ -0.88
VPS29-206ENST00000549578 CRIPTQ9P021 101 aa9.55□□□□□ -0.88
VPS29-206ENST00000549578 PCP4P48539 62 aa9.53□□□□□ -0.88
VPS29-206ENST00000549578 SPRR2GQ9BYE4 73 aa9.53□□□□□ -0.88
VPS29-206ENST00000549578 CRCT1Q9UGL9 99 aa9.41□□□□□ -0.9
VPS29-206ENST00000549578 R4GN34 69 aa9.41□□□□□ -0.9
VPS29-206ENST00000549578 M0QZ58 72 aa9.37□□□□□ -0.91
VPS29-206ENST00000549578 KRTAP19-8Q3LI54 63 aa9.37□□□□□ -0.91
VPS29-206ENST00000549578 SSPOA2VEC9 5147 aa9.37□□□□□ -0.91
VPS29-206ENST00000549578 KRTAP9-6A0A140TA67 174 aa9.34□□□□□ -0.91
VPS29-206ENST00000549578 SEC61GP60059 68 aa9.34□□□□□ -0.91
VPS29-206ENST00000549578 Q5VV11 94 aa9.33□□□□□ -0.92
VPS29-206ENST00000549578 MT1BP07438 61 aa9.32□□□□□ -0.92
VPS29-206ENST00000549578 SERP1Q9Y6X1 66 aa9.32□□□□□ -0.92
VPS29-206ENST00000549578 A0A1B0GU69 56 aa9.24□□□□□ -0.93
VPS29-206ENST00000549578 LINC01554Q52M75 96 aa9.23□□□□□ -0.93
VPS29-206ENST00000549578 KRTAP13-4Q3LI77 160 aa9.2□□□□□ -0.94
VPS29-206ENST00000549578 KRTAP4-8Q9BYQ9 185 aa9.19□□□□□ -0.94
VPS29-206ENST00000549578 KRTAP19-6Q3LI70 58 aa9.18□□□□□ -0.94
VPS29-206ENST00000549578 LINC01558Q9Y6Z2 57 aa9.16□□□□□ -0.94
VPS29-206ENST00000549578 A0A1B0GU33 70 aa9.15□□□□□ -0.95
VPS29-206ENST00000549578 PRR15LQ9BU68 103 aa9.1□□□□□ -0.95
VPS29-206ENST00000549578 FCGBPQ9Y6R7 5405 aaPredicted RBP9.08□□□□□ -0.96
VPS29-206ENST00000549578 SPATA8Q6RVD6 105 aa9.07□□□□□ -0.96
VPS29-206ENST00000549578 PLAC4Q8WY50 150 aa9.07□□□□□ -0.96
VPS29-206ENST00000549578 RPS28P62857 69 aaKnown RBP9□□□□□ -0.97
VPS29-206ENST00000549578 A6NN06 94 aa8.99□□□□□ -0.97
VPS29-206ENST00000549578 SMIM26A0A096LP01 95 aa8.98□□□□□ -0.97
VPS29-206ENST00000549578 A0A0D9SG42 100 aa8.98□□□□□ -0.97
VPS29-206ENST00000549578 KRTAP9-1A8MXZ3 250 aaPredicted RBP8.98□□□□□ -0.97
VPS29-206ENST00000549578 KRTAP10-5P60370 271 aa8.97□□□□□ -0.97
VPS29-206ENST00000549578 Q1T7F1 81 aa8.95□□□□□ -0.98
VPS29-206ENST00000549578 V9GYY9 64 aa8.95□□□□□ -0.98
VPS29-206ENST00000549578 PSPHP1O15172 72 aa8.89□□□□□ -0.99
VPS29-206ENST00000549578 MT1XP80297 61 aa8.89□□□□□ -0.99
VPS29-206ENST00000549578 A8MU10 97 aa8.86□□□□□ -0.99
VPS29-206ENST00000549578 UQCR11O14957 56 aa8.83□□□□□ -1
VPS29-206ENST00000549578 PRO2289Q9P1D8 64 aa8.83□□□□□ -1
VPS29-206ENST00000549578 SPINT4Q6UDR6 99 aa8.8□□□□□ -1
VPS29-206ENST00000549578 KRTAP12-1P59990 96 aa8.79□□□□□ -1
VPS29-206ENST00000549578 KRTAP4-12Q9BQ66 201 aa8.78□□□□□ -1
VPS29-206ENST00000549578 KRTAP12-2P59991 146 aa8.75□□□□□ -1.01
VPS29-206ENST00000549578 CAMK2N1Q7Z7J9 78 aa8.75□□□□□ -1.01
VPS29-206ENST00000549578 LCE3BQ5TA77 95 aa8.74□□□□□ -1.01
VPS29-206ENST00000549578 MACF1Q9UPN3 7388 aaKnown RBP8.72□□□□□ -1.01
VPS29-206ENST00000549578 MIR22HGQ0VDD5 57 aa8.7□□□□□ -1.02
VPS29-206ENST00000549578 A6NED7 52 aa8.6□□□□□ -1.03
VPS29-206ENST00000549578 KRTAP9-9Q9BYP9 154 aa8.54□□□□□ -1.04
VPS29-206ENST00000549578 KRTAP9-4Q9BYQ2 154 aa8.54□□□□□ -1.04
VPS29-206ENST00000549578 SYNE2Q8WXH0 6885 aaKnown RBP8.5□□□□□ -1.05
VPS29-206ENST00000549578 KRTAP10-7P60409 375 aaPredicted RBP8.5□□□□□ -1.05
VPS29-206ENST00000549578 KRTAP9-7A8MTY7 169 aa8.46□□□□□ -1.05
VPS29-206ENST00000549578 KRTAP4-8A0A0G2JLE6 195 aa8.44□□□□□ -1.06
VPS29-206ENST00000549578 KMT2DO14686 5537 aa8.43□□□□□ -1.06
VPS29-206ENST00000549578 KRTAP10-12P60413 245 aa8.42□□□□□ -1.06
VPS29-206ENST00000549578 K7ERS5 55 aa8.39□□□□□ -1.07
VPS29-206ENST00000549578 C10orf95Q9H7T3 257 aa8.36□□□□□ -1.07
VPS29-206ENST00000549578 KRTAP6-3Q3LI67 103 aa8.34□□□□□ -1.08
VPS29-206ENST00000549578 CDC42SE1Q9NRR8 79 aa8.33□□□□□ -1.08
VPS29-206ENST00000549578 KRTAP8-1Q8IUC2 63 aa8.27□□□□□ -1.09
VPS29-206ENST00000549578 LCE1DQ5T752 114 aa8.2□□□□□ -1.1
VPS29-206ENST00000549578 TNP1P09430 55 aa8.19□□□□□ -1.1
VPS29-206ENST00000549578 KRTAP5-9P26371 169 aa8.19□□□□□ -1.1
VPS29-206ENST00000549578 H3BS24 57 aa8.18□□□□□ -1.1
VPS29-206ENST00000549578 KRTAP4-7Q9BYR0 210 aa8.16□□□□□ -1.1
VPS29-206ENST00000549578 SPRR2FQ96RM1 72 aa8.13□□□□□ -1.11
VPS29-206ENST00000549578 MUC12Q9UKN1 5478 aa8.09□□□□□ -1.11
VPS29-206ENST00000549578 BRK1Q8WUW1 75 aa8.05□□□□□ -1.12
VPS29-206ENST00000549578 KRTAP25-1Q3LHN0 102 aa8.01□□□□□ -1.13
VPS29-206ENST00000549578 LCE3AQ5TA76 89 aa7.99□□□□□ -1.13
VPS29-206ENST00000549578 MDN1Q9NU22 5596 aa7.97□□□□□ -1.13
VPS29-206ENST00000549578 KRTAP4-9Q9BYQ8 210 aa7.96□□□□□ -1.14
VPS29-206ENST00000549578 ROMO1P60602 79 aa7.95□□□□□ -1.14
VPS29-206ENST00000549578 KRTAP19-7Q3SYF9 63 aa7.93□□□□□ -1.14
VPS29-206ENST00000549578 NEBP20929 6669 aa7.91□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 78.2 ms