RNA–Protein interactions for RNA: ENST00000546744.5

PTCH1-212, Transcript of patched 1, humanhuman

TSL 2

Gene PTCH1, Length 4,389 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-212ENST00000546744 KRTAP12-2P59991 146 aa6.4□□□□□ -1.39
PTCH1-212ENST00000546744 DNAH7Q8WXX0 4024 aa6.37□□□□□ -1.39
PTCH1-212ENST00000546744 KMT2AQ03164 3969 aa6.37□□□□□ -1.39
PTCH1-212ENST00000546744 DNAH17Q9UFH2 4485 aa6.35□□□□□ -1.39
PTCH1-212ENST00000546744 DNAH11Q96DT5 4516 aa6.32□□□□□ -1.4
PTCH1-212ENST00000546744 KRTAP15-1Q3LI76 137 aa6.31□□□□□ -1.4
PTCH1-212ENST00000546744 KRTAP3-1Q9BYR8 98 aa6.3□□□□□ -1.4
PTCH1-212ENST00000546744 INE1O15225 51 aa6.27□□□□□ -1.41
PTCH1-212ENST00000546744 DNAH2Q9P225 4427 aa6.26□□□□□ -1.41
PTCH1-212ENST00000546744 KRTAP10-6P60371 365 aaPredicted RBP6.25□□□□□ -1.41
PTCH1-212ENST00000546744 DNAH5Q8TE73 4624 aa6.24□□□□□ -1.41
PTCH1-212ENST00000546744 PRO2289Q9P1D8 64 aa6.23□□□□□ -1.41
PTCH1-212ENST00000546744 DNAH6Q9C0G6 4158 aa6.19□□□□□ -1.42
PTCH1-212ENST00000546744 DYNC1H1Q14204 4646 aaKnown RBP6.17□□□□□ -1.42
PTCH1-212ENST00000546744 HECTD4Q9Y4D8 3996 aa6.17□□□□□ -1.42
PTCH1-212ENST00000546744 SACSQ9NZJ4 4579 aa6.16□□□□□ -1.42
PTCH1-212ENST00000546744 HYDINQ4G0P3 5121 aa6.16□□□□□ -1.42
PTCH1-212ENST00000546744 LRP1BQ9NZR2 4599 aa6.15□□□□□ -1.42
PTCH1-212ENST00000546744 KRTAP10-4P60372 401 aaPredicted RBP6.14□□□□□ -1.43
PTCH1-212ENST00000546744 DNAH8Q96JB1 4490 aa6.09□□□□□ -1.43
PTCH1-212ENST00000546744 RYR2Q92736 4967 aa6.07□□□□□ -1.44
PTCH1-212ENST00000546744 FAT1Q14517 4588 aa6.07□□□□□ -1.44
PTCH1-212ENST00000546744 KRTAP23-1A1A580 65 aa6.05□□□□□ -1.44
PTCH1-212ENST00000546744 FAT2Q9NYQ8 4349 aa6.03□□□□□ -1.44
PTCH1-212ENST00000546744 KRTAP10-10P60014 251 aa6.02□□□□□ -1.45
PTCH1-212ENST00000546744 KRTAP3-2Q9BYR7 98 aa6.02□□□□□ -1.45
PTCH1-212ENST00000546744 KMT2CQ8NEZ4 4911 aaKnown RBP6□□□□□ -1.45
PTCH1-212ENST00000546744 VPS13BQ7Z7G8 4022 aa5.99□□□□□ -1.45
PTCH1-212ENST00000546744 PKHD1P08F94 4074 aa5.98□□□□□ -1.45
PTCH1-212ENST00000546744 FRAS1Q86XX4 4008 aa5.98□□□□□ -1.45
PTCH1-212ENST00000546744 PKD1P98161 4303 aa5.97□□□□□ -1.45
PTCH1-212ENST00000546744 MT1HL1P0DM35 61 aa5.95□□□□□ -1.46
PTCH1-212ENST00000546744 APOBP04114 4563 aaKnown RBP5.93□□□□□ -1.46
PTCH1-212ENST00000546744 KRTAP4-5Q9BYR2 181 aa5.92□□□□□ -1.46
PTCH1-212ENST00000546744 KRTAP3-3Q9BYR6 98 aa5.92□□□□□ -1.46
PTCH1-212ENST00000546744 KIAA1109Q2LD37 5005 aa5.91□□□□□ -1.46
PTCH1-212ENST00000546744 RYR3Q15413 4870 aa5.91□□□□□ -1.46
PTCH1-212ENST00000546744 RYR1P21817 5038 aa5.85□□□□□ -1.47
PTCH1-212ENST00000546744 KRTAP17-1Q9BYP8 105 aa5.79□□□□□ -1.48
PTCH1-212ENST00000546744 LRP1Q07954 4544 aaKnown RBP5.76□□□□□ -1.49
PTCH1-212ENST00000546744 HSPG2P98160 4391 aa5.75□□□□□ -1.49
PTCH1-212ENST00000546744 EPPK1P58107 5090 aaKnown RBP5.67□□□□□ -1.5
PTCH1-212ENST00000546744 MYCBP2O75592 4640 aa5.64□□□□□ -1.51
PTCH1-212ENST00000546744 BIRC6Q9NR09 4857 aa5.59□□□□□ -1.51
PTCH1-212ENST00000546744 FAT3Q8TDW7 4589 aa5.58□□□□□ -1.52
PTCH1-212ENST00000546744 HERC2O95714 4834 aa5.57□□□□□ -1.52
PTCH1-212ENST00000546744 KRTAP10-12P60413 245 aa5.57□□□□□ -1.52
PTCH1-212ENST00000546744 KRTAP12-3P60328 96 aa5.53□□□□□ -1.52
PTCH1-212ENST00000546744 PKHD1L1Q86WI1 4243 aa5.52□□□□□ -1.53
PTCH1-212ENST00000546744 TNXBP22105 4242 aa5.49□□□□□ -1.53
PTCH1-212ENST00000546744 ABCA13Q86UQ4 5058 aa5.45□□□□□ -1.54
PTCH1-212ENST00000546744 LCE3AQ5TA76 89 aa5.39□□□□□ -1.55
PTCH1-212ENST00000546744 LRP2P98164 4655 aa5.38□□□□□ -1.55
PTCH1-212ENST00000546744 KRTAP4-1Q9BYQ7 146 aa5.36□□□□□ -1.55
PTCH1-212ENST00000546744 LPAP08519 4548 aa5.3□□□□□ -1.56
PTCH1-212ENST00000546744 LORP23490 312 aaPredicted RBP5.27□□□□□ -1.57
PTCH1-212ENST00000546744 KRTAP19-4Q3LI73 84 aa5.23□□□□□ -1.57
PTCH1-212ENST00000546744 PCLOQ9Y6V0 5065 aa5.21□□□□□ -1.57
PTCH1-212ENST00000546744 HERC1Q15751 4861 aa5.2□□□□□ -1.58
PTCH1-212ENST00000546744 KRTAP8-1Q8IUC2 63 aa5.11□□□□□ -1.59
PTCH1-212ENST00000546744 SPRR2GQ9BYE4 73 aa5.09□□□□□ -1.59
PTCH1-212ENST00000546744 HMCN2Q8NDA2 5059 aa5.04□□□□□ -1.6
PTCH1-212ENST00000546744 MT1HP80294 61 aa5.04□□□□□ -1.6
PTCH1-212ENST00000546744 SPRR5A0A1B0GTR4 108 aa5.03□□□□□ -1.6
PTCH1-212ENST00000546744 KRTAP10-5P60370 271 aa4.97□□□□□ -1.61
PTCH1-212ENST00000546744 KRTAP19-2Q3LHN2 52 aa4.97□□□□□ -1.61
PTCH1-212ENST00000546744 LCE2CQ5TA81 110 aa4.94□□□□□ -1.62
PTCH1-212ENST00000546744 MUC17Q685J3 4493 aa4.93□□□□□ -1.62
PTCH1-212ENST00000546744 CRCT1Q9UGL9 99 aa4.93□□□□□ -1.62
PTCH1-212ENST00000546744 RNF213Q63HN8 5207 aa4.91□□□□□ -1.62
PTCH1-212ENST00000546744 MUC2Q02817 5179 aa4.9□□□□□ -1.62
PTCH1-212ENST00000546744 MT2AP02795 61 aa4.89□□□□□ -1.63
PTCH1-212ENST00000546744 LCE3CQ5T5A8 94 aa4.89□□□□□ -1.63
PTCH1-212ENST00000546744 FLGP20930 4061 aaPredicted RBP4.89□□□□□ -1.63
PTCH1-212ENST00000546744 UBR4Q5T4S7 5183 aa4.88□□□□□ -1.63
PTCH1-212ENST00000546744 MT1FP04733 61 aa4.85□□□□□ -1.63
PTCH1-212ENST00000546744 FAT4Q6V0I7 4981 aa4.8□□□□□ -1.64
PTCH1-212ENST00000546744 KRTAP9-8Q9BYQ0 159 aa4.75□□□□□ -1.65
PTCH1-212ENST00000546744 KRTAP19-1Q8IUB9 90 aa4.73□□□□□ -1.65
PTCH1-212ENST00000546744 KRTAP19-8Q3LI54 63 aa4.72□□□□□ -1.65
PTCH1-212ENST00000546744 KRTAP19-5Q3LI72 72 aa4.72□□□□□ -1.65
PTCH1-212ENST00000546744 KRTAP9-3Q9BYQ3 159 aa4.59□□□□□ -1.68
PTCH1-212ENST00000546744 MT1BP07438 61 aa4.55□□□□□ -1.68
PTCH1-212ENST00000546744 LCE2AQ5TA79 106 aaPredicted RBP4.55□□□□□ -1.68
PTCH1-212ENST00000546744 KRTAP12-4P60329 112 aa4.51□□□□□ -1.69
PTCH1-212ENST00000546744 KRTAP10-7P60409 375 aaPredicted RBP4.5□□□□□ -1.69
PTCH1-212ENST00000546744 MT1XP80297 61 aa4.48□□□□□ -1.69
PTCH1-212ENST00000546744 FSIP2Q5CZC0 6907 aa4.46□□□□□ -1.7
PTCH1-212ENST00000546744 LCE2BO14633 110 aa4.45□□□□□ -1.7
PTCH1-212ENST00000546744 LCE2DQ5TA82 110 aaPredicted RBP4.35□□□□□ -1.71
PTCH1-212ENST00000546744 MT1GP13640 62 aa4.3□□□□□ -1.72
PTCH1-212ENST00000546744 LCE3EQ5T5B0 92 aa4.29□□□□□ -1.72
PTCH1-212ENST00000546744 SPRR2FQ96RM1 72 aa4.29□□□□□ -1.72
PTCH1-212ENST00000546744 LCE3DQ9BYE3 92 aa4.28□□□□□ -1.72
PTCH1-212ENST00000546744 MT1LQ93083 61 aa4.24□□□□□ -1.73
PTCH1-212ENST00000546744 LCE3BQ5TA77 95 aa4.22□□□□□ -1.73
PTCH1-212ENST00000546744 KRTAP4-8A0A0G2JLE6 195 aa4.18□□□□□ -1.74
PTCH1-212ENST00000546744 KRTAP4-8Q9BYQ9 185 aa4.18□□□□□ -1.74
PTCH1-212ENST00000546744 USH2AO75445 5202 aa4.17□□□□□ -1.74
PTCH1-212ENST00000546744 KRTAP19-6Q3LI70 58 aa4.15□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 74.2 ms