RNA–Protein interactions for RNA: ENST00000533242.1

NEDD8-207, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 1 (best)

Gene NEDD8, Length 2,300 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-207ENST00000533242 PRR15LQ9BU68 103 aa4.47□□□□□ -1.69
NEDD8-207ENST00000533242 RPS29P62273 56 aaKnown RBP4.46□□□□□ -1.7
NEDD8-207ENST00000533242 MT1HP80294 61 aa4.46□□□□□ -1.7
NEDD8-207ENST00000533242 KRTAP19-2Q3LHN2 52 aa4.45□□□□□ -1.7
NEDD8-207ENST00000533242 SEC61GP60059 68 aa4.45□□□□□ -1.7
NEDD8-207ENST00000533242 LIMD2Q9BT23 127 aa4.45□□□□□ -1.7
NEDD8-207ENST00000533242 V9GYY9 64 aa4.45□□□□□ -1.7
NEDD8-207ENST00000533242 FSIP2Q5CZC0 6907 aa4.44□□□□□ -1.7
NEDD8-207ENST00000533242 IGKV2-30P06310 120 aa4.44□□□□□ -1.7
NEDD8-207ENST00000533242 CHKB-CPT1BH3BT56 60 aa4.43□□□□□ -1.7
NEDD8-207ENST00000533242 KRTAP10-6P60371 365 aaPredicted RBP4.41□□□□□ -1.7
NEDD8-207ENST00000533242 LINC01558Q9Y6Z2 57 aa4.41□□□□□ -1.7
NEDD8-207ENST00000533242 LCA10Q71F78 164 aa4.41□□□□□ -1.7
NEDD8-207ENST00000533242 Q75L30 129 aa4.41□□□□□ -1.7
NEDD8-207ENST00000533242 DMAC1Q96GE9 116 aa4.41□□□□□ -1.7
NEDD8-207ENST00000533242 IGKV2D-30A0A075B6S6 120 aa4.4□□□□□ -1.7
NEDD8-207ENST00000533242 LOC100996750A0A140TA64 210 aa4.39□□□□□ -1.71
NEDD8-207ENST00000533242 KRTAP4-6Q9BYQ5 205 aa4.39□□□□□ -1.71
NEDD8-207ENST00000533242 SPINK7P58062 85 aa4.38□□□□□ -1.71
NEDD8-207ENST00000533242 ACYP2P14621 99 aa4.38□□□□□ -1.71
NEDD8-207ENST00000533242 A6NED7 52 aa4.37□□□□□ -1.71
NEDD8-207ENST00000533242 C9orf92A6NGG3 77 aa4.35□□□□□ -1.71
NEDD8-207ENST00000533242 KRTAP9-7A8MTY7 169 aa4.35□□□□□ -1.71
NEDD8-207ENST00000533242 M0R2T5 61 aa4.34□□□□□ -1.71
NEDD8-207ENST00000533242 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.34□□□□□ -1.72
NEDD8-207ENST00000533242 SPTSSBQ8NFR3 76 aa4.32□□□□□ -1.72
NEDD8-207ENST00000533242 C7orf65Q6ZTY9 151 aa4.31□□□□□ -1.72
NEDD8-207ENST00000533242 CDC42SE1Q9NRR8 79 aa4.31□□□□□ -1.72
NEDD8-207ENST00000533242 PMAIP1Q13794 54 aa4.3□□□□□ -1.72
NEDD8-207ENST00000533242 COX6B2Q6YFQ2 88 aa4.3□□□□□ -1.72
NEDD8-207ENST00000533242 A8MUU9 505 aa4.28□□□□□ -1.72
NEDD8-207ENST00000533242 C20orf166-AS1Q96NR2 134 aa4.28□□□□□ -1.72
NEDD8-207ENST00000533242 ATP11AUNQ6ZP68 121 aa4.27□□□□□ -1.73
NEDD8-207ENST00000533242 KRTAP3-1Q9BYR8 98 aa4.27□□□□□ -1.73
NEDD8-207ENST00000533242 A0A1B0GU69 56 aa4.26□□□□□ -1.73
NEDD8-207ENST00000533242 RPL37P61927 97 aaKnown RBP4.26□□□□□ -1.73
NEDD8-207ENST00000533242 A6NN06 94 aa4.26□□□□□ -1.73
NEDD8-207ENST00000533242 FLGP20930 4061 aaPredicted RBP4.24□□□□□ -1.73
NEDD8-207ENST00000533242 SPATA8Q6RVD6 105 aa4.18□□□□□ -1.74
NEDD8-207ENST00000533242 KTN1-AS1Q86SY8 53 aa4.18□□□□□ -1.74
NEDD8-207ENST00000533242 KRTAP9-8Q9BYQ0 159 aa4.18□□□□□ -1.74
NEDD8-207ENST00000533242 RBM12B-AS1Q9P1G2 102 aa4.17□□□□□ -1.74
NEDD8-207ENST00000533242 MIR22HGQ0VDD5 57 aa4.16□□□□□ -1.74
NEDD8-207ENST00000533242 UQCR11O14957 56 aa4.16□□□□□ -1.74
NEDD8-207ENST00000533242 SSPOA2VEC9 5147 aa4.14□□□□□ -1.75
NEDD8-207ENST00000533242 KRTAP19-1Q8IUB9 90 aa4.13□□□□□ -1.75
NEDD8-207ENST00000533242 ADM2Q7Z4H4 148 aa4.13□□□□□ -1.75
NEDD8-207ENST00000533242 USH2AO75445 5202 aa4.12□□□□□ -1.75
NEDD8-207ENST00000533242 H0YAA0 97 aa4.11□□□□□ -1.75
NEDD8-207ENST00000533242 PRAC1Q96KF2 57 aa4.1□□□□□ -1.75
NEDD8-207ENST00000533242 MT2AP02795 61 aa4.1□□□□□ -1.75
NEDD8-207ENST00000533242 FCGBPQ9Y6R7 5405 aaPredicted RBP4.08□□□□□ -1.76
NEDD8-207ENST00000533242 MT1FP04733 61 aa4.06□□□□□ -1.76
NEDD8-207ENST00000533242 KRTAP9-3Q9BYQ3 159 aa4.06□□□□□ -1.76
NEDD8-207ENST00000533242 A0A1B0GU33 70 aa4.05□□□□□ -1.76
NEDD8-207ENST00000533242 H1FX-AS1Q4G0G2 97 aa4.04□□□□□ -1.76
NEDD8-207ENST00000533242 KRTAP10-10P60014 251 aa4.03□□□□□ -1.76
NEDD8-207ENST00000533242 KRTAP19-6Q3LI70 58 aa4.01□□□□□ -1.77
NEDD8-207ENST00000533242 KRTAP13-4Q3LI77 160 aa4□□□□□ -1.77
NEDD8-207ENST00000533242 KRTAP6-3Q3LI67 103 aa3.99□□□□□ -1.77
NEDD8-207ENST00000533242 MACF1Q9UPN3 7388 aaKnown RBP3.98□□□□□ -1.77
NEDD8-207ENST00000533242 S4R3F8 94 aa3.98□□□□□ -1.77
NEDD8-207ENST00000533242 P0C880 135 aa3.96□□□□□ -1.78
NEDD8-207ENST00000533242 SYNE2Q8WXH0 6885 aaKnown RBP3.96□□□□□ -1.78
NEDD8-207ENST00000533242 CSAG1Q6PB30 78 aa3.95□□□□□ -1.78
NEDD8-207ENST00000533242 A0A0D9SG42 100 aa3.92□□□□□ -1.78
NEDD8-207ENST00000533242 KRTAP23-1A1A580 65 aa3.91□□□□□ -1.78
NEDD8-207ENST00000533242 KRTAP4-8Q9BYQ9 185 aa3.91□□□□□ -1.78
NEDD8-207ENST00000533242 A0A0A0MQY5 61 aa3.9□□□□□ -1.78
NEDD8-207ENST00000533242 CRIPTQ9P021 101 aa3.88□□□□□ -1.79
NEDD8-207ENST00000533242 LINC01554Q52M75 96 aa3.87□□□□□ -1.79
NEDD8-207ENST00000533242 KRTAP12-2P59991 146 aa3.84□□□□□ -1.79
NEDD8-207ENST00000533242 KRTAP25-1Q3LHN0 102 aa3.83□□□□□ -1.8
NEDD8-207ENST00000533242 K7ERS5 55 aa3.82□□□□□ -1.8
NEDD8-207ENST00000533242 NEBP20929 6669 aa3.81□□□□□ -1.8
NEDD8-207ENST00000533242 KRTAP20-1Q3LI63 56 aa3.81□□□□□ -1.8
NEDD8-207ENST00000533242 KRTAP12-1P59990 96 aa3.79□□□□□ -1.8
NEDD8-207ENST00000533242 ROMO1P60602 79 aa3.79□□□□□ -1.8
NEDD8-207ENST00000533242 LCE4AQ5TA78 99 aa3.78□□□□□ -1.8
NEDD8-207ENST00000533242 SPINT4Q6UDR6 99 aa3.76□□□□□ -1.81
NEDD8-207ENST00000533242 C10orf95Q9H7T3 257 aa3.75□□□□□ -1.81
NEDD8-207ENST00000533242 M0QZ58 72 aa3.72□□□□□ -1.81
NEDD8-207ENST00000533242 LCE3BQ5TA77 95 aa3.71□□□□□ -1.82
NEDD8-207ENST00000533242 KRTAP5-9P26371 169 aa3.69□□□□□ -1.82
NEDD8-207ENST00000533242 R4GN34 69 aa3.69□□□□□ -1.82
NEDD8-207ENST00000533242 MT1BP07438 61 aa3.66□□□□□ -1.82
NEDD8-207ENST00000533242 KRTAP4-8A0A0G2JLE6 195 aa3.65□□□□□ -1.82
NEDD8-207ENST00000533242 KRTAP2-3P0C7H8 128 aa3.65□□□□□ -1.83
NEDD8-207ENST00000533242 KRTAP2-4Q9BYR9 128 aa3.65□□□□□ -1.83
NEDD8-207ENST00000533242 KRTAP10-5P60370 271 aa3.64□□□□□ -1.83
NEDD8-207ENST00000533242 KRTAP9-9Q9BYP9 154 aa3.64□□□□□ -1.83
NEDD8-207ENST00000533242 KRTAP9-4Q9BYQ2 154 aa3.64□□□□□ -1.83
NEDD8-207ENST00000533242 MUC12Q9UKN1 5478 aa3.63□□□□□ -1.83
NEDD8-207ENST00000533242 KRTAP19-8Q3LI54 63 aa3.63□□□□□ -1.83
NEDD8-207ENST00000533242 KRTAP4-12Q9BQ66 201 aa3.61□□□□□ -1.83
NEDD8-207ENST00000533242 SPRR2GQ9BYE4 73 aa3.6□□□□□ -1.83
NEDD8-207ENST00000533242 KRTAP19-4Q3LI73 84 aa3.58□□□□□ -1.84
NEDD8-207ENST00000533242 KRTAP4-7Q9BYR0 210 aa3.55□□□□□ -1.84
NEDD8-207ENST00000533242 KRTAP15-1Q3LI76 137 aa3.54□□□□□ -1.84
NEDD8-207ENST00000533242 KMT2DO14686 5537 aa3.52□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms