RNA–Protein interactions for RNA: ENST00000530748.5

CTNND1-227, Transcript of catenin delta 1, humanhuman

TSL 1 (best) BASIC

Gene CTNND1, Length 5,925 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTNND1-227ENST00000530748 FBN3Q75N90 2809 aa3.53□□□□□ -1.84
CTNND1-227ENST00000530748 DNAH1Q9P2D7 4330 aa3.53□□□□□ -1.85
CTNND1-227ENST00000530748 TRRAPQ9Y4A5 3859 aa3.5□□□□□ -1.85
CTNND1-227ENST00000530748 MUC3AQ02505 3323 aa3.5□□□□□ -1.85
CTNND1-227ENST00000530748 MEGF8Q7Z7M0 2845 aa3.49□□□□□ -1.85
CTNND1-227ENST00000530748 DNAH10Q8IVF4 4471 aa3.47□□□□□ -1.85
CTNND1-227ENST00000530748 VPS13CQ709C8 3753 aa3.47□□□□□ -1.85
CTNND1-227ENST00000530748 KRTAP10-5P60370 271 aa3.45□□□□□ -1.86
CTNND1-227ENST00000530748 MT1HP80294 61 aa3.45□□□□□ -1.86
CTNND1-227ENST00000530748 DNAH17Q9UFH2 4485 aa3.44□□□□□ -1.86
CTNND1-227ENST00000530748 DNAH11Q96DT5 4516 aa3.44□□□□□ -1.86
CTNND1-227ENST00000530748 DNAH6Q9C0G6 4158 aa3.43□□□□□ -1.86
CTNND1-227ENST00000530748 KRTAP4-1Q9BYQ7 146 aa3.42□□□□□ -1.86
CTNND1-227ENST00000530748 KRTAP10-7P60409 375 aaPredicted RBP3.41□□□□□ -1.86
CTNND1-227ENST00000530748 COL7A1Q02388 2944 aa3.41□□□□□ -1.86
CTNND1-227ENST00000530748 VPS13DQ5THJ4 4388 aa3.4□□□□□ -1.87
CTNND1-227ENST00000530748 CMYA5Q8N3K9 4069 aa3.38□□□□□ -1.87
CTNND1-227ENST00000530748 DNAH5Q8TE73 4624 aa3.37□□□□□ -1.87
CTNND1-227ENST00000530748 MT2AP02795 61 aa3.35□□□□□ -1.87
CTNND1-227ENST00000530748 SPRR2GQ9BYE4 73 aa3.35□□□□□ -1.87
CTNND1-227ENST00000530748 DNAH8Q96JB1 4490 aa3.35□□□□□ -1.87
CTNND1-227ENST00000530748 DYNC1H1Q14204 4646 aaKnown RBP3.35□□□□□ -1.87
CTNND1-227ENST00000530748 FAT2Q9NYQ8 4349 aa3.35□□□□□ -1.87
CTNND1-227ENST00000530748 DYNC2H1Q8NCM8 4307 aaKnown RBP3.35□□□□□ -1.87
CTNND1-227ENST00000530748 PLECQ15149 4684 aaKnown RBP3.34□□□□□ -1.87
CTNND1-227ENST00000530748 SPRR2FQ96RM1 72 aa3.34□□□□□ -1.88
CTNND1-227ENST00000530748 DNAH7Q8WXX0 4024 aa3.34□□□□□ -1.88
CTNND1-227ENST00000530748 SACSQ9NZJ4 4579 aa3.31□□□□□ -1.88
CTNND1-227ENST00000530748 CSMD3Q7Z407 3707 aa3.29□□□□□ -1.88
CTNND1-227ENST00000530748 MT1FP04733 61 aa3.28□□□□□ -1.89
CTNND1-227ENST00000530748 PRKDCP78527 4128 aaKnown RBP3.27□□□□□ -1.89
CTNND1-227ENST00000530748 KRTAP19-5Q3LI72 72 aa3.27□□□□□ -1.89
CTNND1-227ENST00000530748 KRTAP19-4Q3LI73 84 aa3.27□□□□□ -1.89
CTNND1-227ENST00000530748 LCE3CQ5T5A8 94 aa3.24□□□□□ -1.89
CTNND1-227ENST00000530748 SPRR2EP22531 72 aa3.22□□□□□ -1.89
CTNND1-227ENST00000530748 SPRR2BP35325 72 aa3.22□□□□□ -1.89
CTNND1-227ENST00000530748 SPRR2AP35326 72 aa3.22□□□□□ -1.89
CTNND1-227ENST00000530748 LRP1BQ9NZR2 4599 aa3.22□□□□□ -1.89
CTNND1-227ENST00000530748 ANK2Q01484 3957 aa3.22□□□□□ -1.89
CTNND1-227ENST00000530748 STARD9Q9P2P6 4700 aa3.21□□□□□ -1.9
CTNND1-227ENST00000530748 ZNF469Q96JG9 3925 aaPredicted RBP3.19□□□□□ -1.9
CTNND1-227ENST00000530748 SPRR2DP22532 72 aa3.15□□□□□ -1.91
CTNND1-227ENST00000530748 HERC1Q15751 4861 aa3.11□□□□□ -1.91
CTNND1-227ENST00000530748 VPS13BQ7Z7G8 4022 aa3.11□□□□□ -1.91
CTNND1-227ENST00000530748 FRAS1Q86XX4 4008 aa3.1□□□□□ -1.91
CTNND1-227ENST00000530748 KRTAP19-8Q3LI54 63 aa3.1□□□□□ -1.91
CTNND1-227ENST00000530748 APOBP04114 4563 aaKnown RBP3.09□□□□□ -1.91
CTNND1-227ENST00000530748 FAT1Q14517 4588 aa3.09□□□□□ -1.92
CTNND1-227ENST00000530748 HSPG2P98160 4391 aa3.09□□□□□ -1.92
CTNND1-227ENST00000530748 KRTAP12-4P60329 112 aa3.08□□□□□ -1.92
CTNND1-227ENST00000530748 KMT2AQ03164 3969 aa3.08□□□□□ -1.92
CTNND1-227ENST00000530748 LCE2BO14633 110 aa3.06□□□□□ -1.92
CTNND1-227ENST00000530748 FAT3Q8TDW7 4589 aa3.06□□□□□ -1.92
CTNND1-227ENST00000530748 HECTD4Q9Y4D8 3996 aa3.04□□□□□ -1.92
CTNND1-227ENST00000530748 PKHD1L1Q86WI1 4243 aa3.03□□□□□ -1.92
CTNND1-227ENST00000530748 MT1XP80297 61 aa3.02□□□□□ -1.93
CTNND1-227ENST00000530748 KRTAP19-1Q8IUB9 90 aa3.02□□□□□ -1.93
CTNND1-227ENST00000530748 SPRR5A0A1B0GTR4 108 aa3.01□□□□□ -1.93
CTNND1-227ENST00000530748 KRTAP17-1Q9BYP8 105 aa2.99□□□□□ -1.93
CTNND1-227ENST00000530748 PKD1P98161 4303 aa2.99□□□□□ -1.93
CTNND1-227ENST00000530748 LCE3BQ5TA77 95 aa2.98□□□□□ -1.93
CTNND1-227ENST00000530748 MUC17Q685J3 4493 aa2.98□□□□□ -1.93
CTNND1-227ENST00000530748 MT1BP07438 61 aa2.97□□□□□ -1.93
CTNND1-227ENST00000530748 MT1GP13640 62 aa2.96□□□□□ -1.94
CTNND1-227ENST00000530748 DNHD1Q96M86 4753 aa2.96□□□□□ -1.94
CTNND1-227ENST00000530748 KRTAP9-8Q9BYQ0 159 aa2.95□□□□□ -1.94
CTNND1-227ENST00000530748 RYR3Q15413 4870 aa2.95□□□□□ -1.94
CTNND1-227ENST00000530748 LCE2CQ5TA81 110 aa2.94□□□□□ -1.94
CTNND1-227ENST00000530748 LRP1Q07954 4544 aaKnown RBP2.93□□□□□ -1.94
CTNND1-227ENST00000530748 MYCBP2O75592 4640 aa2.92□□□□□ -1.94
CTNND1-227ENST00000530748 RYR1P21817 5038 aa2.91□□□□□ -1.94
CTNND1-227ENST00000530748 KRTAP9-3Q9BYQ3 159 aa2.9□□□□□ -1.95
CTNND1-227ENST00000530748 LCE2DQ5TA82 110 aaPredicted RBP2.9□□□□□ -1.95
CTNND1-227ENST00000530748 LYSTQ99698 3801 aa2.89□□□□□ -1.95
CTNND1-227ENST00000530748 RYR2Q92736 4967 aa2.88□□□□□ -1.95
CTNND1-227ENST00000530748 KRTAP4-8A0A0G2JLE6 195 aa2.86□□□□□ -1.95
CTNND1-227ENST00000530748 KRTAP4-8Q9BYQ9 185 aa2.86□□□□□ -1.95
CTNND1-227ENST00000530748 TNXBP22105 4242 aa2.85□□□□□ -1.95
CTNND1-227ENST00000530748 PKHD1P08F94 4074 aa2.83□□□□□ -1.96
CTNND1-227ENST00000530748 LCE3DQ9BYE3 92 aa2.81□□□□□ -1.96
CTNND1-227ENST00000530748 KRTAP19-3Q7Z4W3 81 aa2.79□□□□□ -1.96
CTNND1-227ENST00000530748 LCE3EQ5T5B0 92 aa2.76□□□□□ -1.97
CTNND1-227ENST00000530748 MT1LQ93083 61 aa2.75□□□□□ -1.97
CTNND1-227ENST00000530748 MT1EP04732 61 aa2.73□□□□□ -1.97
CTNND1-227ENST00000530748 MT4P47944 62 aa2.73□□□□□ -1.97
CTNND1-227ENST00000530748 LPAP08519 4548 aa2.72□□□□□ -1.97
CTNND1-227ENST00000530748 HYDINQ4G0P3 5121 aa2.7□□□□□ -1.98
CTNND1-227ENST00000530748 KRTAP19-2Q3LHN2 52 aa2.69□□□□□ -1.98
CTNND1-227ENST00000530748 KRTAP4-7Q9BYR0 210 aa2.69□□□□□ -1.98
CTNND1-227ENST00000530748 KRTAP9-6A0A140TA67 174 aa2.69□□□□□ -1.98
CTNND1-227ENST00000530748 KRTAP20-1Q3LI63 56 aa2.68□□□□□ -1.98
CTNND1-227ENST00000530748 KRTAP9-2Q9BYQ4 174 aa2.68□□□□□ -1.98
CTNND1-227ENST00000530748 BIRC6Q9NR09 4857 aa2.67□□□□□ -1.98
CTNND1-227ENST00000530748 KIAA1109Q2LD37 5005 aa2.66□□□□□ -1.98
CTNND1-227ENST00000530748 MT1MQ8N339 61 aa2.66□□□□□ -1.98
CTNND1-227ENST00000530748 KRTAP19-6Q3LI70 58 aa2.65□□□□□ -1.98
CTNND1-227ENST00000530748 MT3P25713 68 aa2.64□□□□□ -1.99
CTNND1-227ENST00000530748 LCE1BQ5T7P3 118 aa2.63□□□□□ -1.99
CTNND1-227ENST00000530748 FLGP20930 4061 aaPredicted RBP2.63□□□□□ -1.99
CTNND1-227ENST00000530748 LCE1DQ5T752 114 aa2.6□□□□□ -1.99
Retrieved 100 of 20,778 RNA–protein pairs in 7.9 ms