RNA–Protein interactions for RNA: ENST00000525688.5

CD44-220, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 560 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-220ENST00000525688 SRRM2Q9UQ35 2752 aaKnown RBP2.27□□□□□ -2.05
CD44-220ENST00000525688 ENHOQ6UWT2 76 aa2.27□□□□□ -2.05
CD44-220ENST00000525688 RPL39LQ96EH5 51 aaKnown RBP2.27□□□□□ -2.05
CD44-220ENST00000525688 I3L3M4 83 aa2.26□□□□□ -2.05
CD44-220ENST00000525688 ANGP03950 147 aaKnown RBP2.26□□□□□ -2.05
CD44-220ENST00000525688 IGKV4-1P06312 121 aa2.26□□□□□ -2.05
CD44-220ENST00000525688 POLR2KP53803 58 aaKnown RBP2.26□□□□□ -2.05
CD44-220ENST00000525688 COX17Q14061 63 aa2.26□□□□□ -2.05
CD44-220ENST00000525688 ATXN8Q156A1 80 aa2.26□□□□□ -2.05
CD44-220ENST00000525688 DEFB104AQ8WTQ1 72 aa2.26□□□□□ -2.05
CD44-220ENST00000525688 KRTAP10-1P60331 282 aa2.25□□□□□ -2.05
CD44-220ENST00000525688 KRTAP5-5Q701N2 237 aaPredicted RBP2.25□□□□□ -2.05
CD44-220ENST00000525688 HERC1Q15751 4861 aa2.25□□□□□ -2.05
CD44-220ENST00000525688 MYCBP2O75592 4640 aa2.25□□□□□ -2.05
CD44-220ENST00000525688 VPS13BQ7Z7G8 4022 aa2.24□□□□□ -2.05
CD44-220ENST00000525688 H0Y9P7 68 aa2.24□□□□□ -2.05
CD44-220ENST00000525688 CLPSL2Q6UWE3 100 aa2.24□□□□□ -2.05
CD44-220ENST00000525688 SMIM2Q9BVW6 85 aa2.24□□□□□ -2.05
CD44-220ENST00000525688 LINC00472Q9H8W2 130 aa2.24□□□□□ -2.05
CD44-220ENST00000525688 FCER1GP30273 86 aa2.23□□□□□ -2.05
CD44-220ENST00000525688 SPINK7P58062 85 aa2.23□□□□□ -2.05
CD44-220ENST00000525688 SPATA8Q6RVD6 105 aa2.23□□□□□ -2.05
CD44-220ENST00000525688 Q6ZSA8 131 aa2.23□□□□□ -2.05
CD44-220ENST00000525688 LINC00959A0A1B0GUT2 108 aa2.22□□□□□ -2.05
CD44-220ENST00000525688 RPL39P62891 51 aaKnown RBP2.22□□□□□ -2.05
CD44-220ENST00000525688 KRTAP5-4Q6L8H1 288 aa2.22□□□□□ -2.05
CD44-220ENST00000525688 Q6ZQY7 126 aa2.22□□□□□ -2.05
CD44-220ENST00000525688 GVQW2A0A096LPI5 108 aaPredicted RBP2.21□□□□□ -2.06
CD44-220ENST00000525688 K7EMI3 77 aa2.21□□□□□ -2.06
CD44-220ENST00000525688 ACYP2P14621 99 aa2.21□□□□□ -2.06
CD44-220ENST00000525688 LINC01546A6NGU7 62 aa2.2□□□□□ -2.06
CD44-220ENST00000525688 IGIPA6NJ69 53 aa2.2□□□□□ -2.06
CD44-220ENST00000525688 NDUFB1O75438 58 aa2.2□□□□□ -2.06
CD44-220ENST00000525688 HAMPP81172 84 aa2.2□□□□□ -2.06
CD44-220ENST00000525688 LRP1Q07954 4544 aaKnown RBP2.19□□□□□ -2.06
CD44-220ENST00000525688 SMR3BP02814 79 aaPredicted RBP2.19□□□□□ -2.06
CD44-220ENST00000525688 Q5VSD8 79 aa2.19□□□□□ -2.06
CD44-220ENST00000525688 FAT3Q8TDW7 4589 aa2.19□□□□□ -2.06
CD44-220ENST00000525688 LINC01549A6NIU2 74 aa2.18□□□□□ -2.06
CD44-220ENST00000525688 KRTAP10-4P60372 401 aaPredicted RBP2.18□□□□□ -2.06
CD44-220ENST00000525688 COX6A2Q02221 97 aa2.18□□□□□ -2.06
CD44-220ENST00000525688 ZCCHC13Q8WW36 166 aaKnown RBP2.18□□□□□ -2.06
CD44-220ENST00000525688 OBSCN-AS1Q96MR7 158 aa2.18□□□□□ -2.06
CD44-220ENST00000525688 KRTAP4-4Q9BYR3 166 aa2.18□□□□□ -2.06
CD44-220ENST00000525688 PKHD1L1Q86WI1 4243 aa2.18□□□□□ -2.06
CD44-220ENST00000525688 FLG2Q5D862 2391 aaPredicted RBP2.17□□□□□ -2.06
CD44-220ENST00000525688 HMCN2Q8NDA2 5059 aa2.17□□□□□ -2.06
CD44-220ENST00000525688 DMBT1Q9UGM3 2413 aaPredicted RBP2.17□□□□□ -2.06
CD44-220ENST00000525688 NREPQ16612 68 aa2.17□□□□□ -2.06
CD44-220ENST00000525688 A0A096LNI7 61 aa2.16□□□□□ -2.06
CD44-220ENST00000525688 NDUFA1O15239 70 aa2.16□□□□□ -2.06
CD44-220ENST00000525688 UNQ6190/PRO20217Q6UXQ8 127 aa2.16□□□□□ -2.06
CD44-220ENST00000525688 C6orf48Q9UBA6 75 aa2.16□□□□□ -2.06
CD44-220ENST00000525688 CDKN2A-AS1Q9UH64 79 aa2.16□□□□□ -2.06
CD44-220ENST00000525688 Q8IZM0 81 aa2.15□□□□□ -2.07
CD44-220ENST00000525688 TRBV30A0A0K0K1B3 111 aa2.14□□□□□ -2.07
CD44-220ENST00000525688 TOMM7Q9P0U1 55 aa2.13□□□□□ -2.07
CD44-220ENST00000525688 TNXBP22105 4242 aa2.12□□□□□ -2.07
CD44-220ENST00000525688 KRTAP13-4Q3LI77 160 aa2.12□□□□□ -2.07
CD44-220ENST00000525688 SMIM11BQ8TCY0 68 aa2.12□□□□□ -2.07
CD44-220ENST00000525688 OBSCNQ5VST9 7968 aa2.12□□□□□ -2.07
CD44-220ENST00000525688 Q6ZRX8 168 aa2.11□□□□□ -2.07
CD44-220ENST00000525688 PLAC4Q8WY50 150 aa2.11□□□□□ -2.07
CD44-220ENST00000525688 A0A1B0GU69 56 aa2.1□□□□□ -2.07
CD44-220ENST00000525688 MT1HL1P0DM35 61 aa2.1□□□□□ -2.07
CD44-220ENST00000525688 PLNP26678 52 aa2.1□□□□□ -2.07
CD44-220ENST00000525688 SPINK6Q6UWN8 80 aa2.1□□□□□ -2.07
CD44-220ENST00000525688 LRP2P98164 4655 aa2.09□□□□□ -2.07
CD44-220ENST00000525688 NCR3O14931 201 aa2.08□□□□□ -2.08
CD44-220ENST00000525688 LCE1CQ5T751 118 aa2.08□□□□□ -2.08
CD44-220ENST00000525688 LCE1BQ5T7P3 118 aa2.08□□□□□ -2.08
CD44-220ENST00000525688 LINC00575Q6W349 94 aa2.08□□□□□ -2.08
CD44-220ENST00000525688 RNF213Q63HN8 5207 aa2.08□□□□□ -2.08
CD44-220ENST00000525688 LINC00158P58513 81 aa2.07□□□□□ -2.08
CD44-220ENST00000525688 KRTAP13-1Q8IUC0 172 aa2.07□□□□□ -2.08
CD44-220ENST00000525688 KRTAP6-3Q3LI67 103 aa2.06□□□□□ -2.08
CD44-220ENST00000525688 COX7BP24311 80 aa2.05□□□□□ -2.08
CD44-220ENST00000525688 UBL5Q9BZL1 73 aa2.05□□□□□ -2.08
CD44-220ENST00000525688 KCNQ1DNQ9H478 68 aa2.05□□□□□ -2.08
CD44-220ENST00000525688 SPRR1AP35321 89 aa2.04□□□□□ -2.08
CD44-220ENST00000525688 RPL37P61927 97 aaKnown RBP2.03□□□□□ -2.08
CD44-220ENST00000525688 PRLHP81277 87 aa2.03□□□□□ -2.08
CD44-220ENST00000525688 LINC00308Q8TCZ7 52 aa2.03□□□□□ -2.08
CD44-220ENST00000525688 KRTAP4-3Q9BYR4 195 aa2.03□□□□□ -2.08
CD44-220ENST00000525688 LPAP08519 4548 aa2.02□□□□□ -2.09
CD44-220ENST00000525688 PCOTHQ58A44 107 aa2.02□□□□□ -2.09
CD44-220ENST00000525688 SSBP3-AS1Q7Z2R9 100 aa2.02□□□□□ -2.09
CD44-220ENST00000525688 ETDCA0A1B0GVM5 59 aa2.01□□□□□ -2.09
CD44-220ENST00000525688 MUC2Q02817 5179 aa2□□□□□ -2.09
CD44-220ENST00000525688 SPRR1BP22528 89 aa1.98□□□□□ -2.09
CD44-220ENST00000525688 IGLV5-48A0A075B6I7 105 aa1.96□□□□□ -2.1
CD44-220ENST00000525688 SPINK1P00995 79 aa1.95□□□□□ -2.1
CD44-220ENST00000525688 RPS29P62273 56 aaKnown RBP1.95□□□□□ -2.1
CD44-220ENST00000525688 KRTAP5-2Q701N4 177 aa1.95□□□□□ -2.1
CD44-220ENST00000525688 FAT4Q6V0I7 4981 aa1.95□□□□□ -2.1
CD44-220ENST00000525688 DEFB105AQ8NG35 78 aa1.93□□□□□ -2.1
CD44-220ENST00000525688 CRCT1Q9UGL9 99 aa1.93□□□□□ -2.1
CD44-220ENST00000525688 MUC17Q685J3 4493 aa1.92□□□□□ -2.1
CD44-220ENST00000525688 H0YGX0 51 aa1.92□□□□□ -2.1
CD44-220ENST00000525688 KRTAP12-1P59990 96 aa1.92□□□□□ -2.1
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms