RNA–Protein interactions for RNA: ENST00000517578.1

HMGB1P19-201, Transcript of high mobility group box 1 pseudogene 19, humanhuman

BASIC

Gene HMGB1P19, Length 577 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P19-201ENST00000517578 CACNA1AO00555 2505 aa2.18□□□□□ -2.06
HMGB1P19-201ENST00000517578 NBEAL1Q6ZS30 2694 aa2.17□□□□□ -2.06
HMGB1P19-201ENST00000517578 SMR3AQ99954 134 aa2.17□□□□□ -2.06
HMGB1P19-201ENST00000517578 MYO18BQ8IUG5 2567 aa2.17□□□□□ -2.06
HMGB1P19-201ENST00000517578 HIVEP1P15822 2718 aa2.17□□□□□ -2.06
HMGB1P19-201ENST00000517578 EYSQ5T1H1 3165 aa2.16□□□□□ -2.06
HMGB1P19-201ENST00000517578 RELNP78509 3460 aa2.16□□□□□ -2.06
HMGB1P19-201ENST00000517578 NBPF19A0A087WUL8 3843 aa2.16□□□□□ -2.06
HMGB1P19-201ENST00000517578 FBN2P35556 2912 aa2.15□□□□□ -2.06
HMGB1P19-201ENST00000517578 PDZD2O15018 2839 aa2.14□□□□□ -2.07
HMGB1P19-201ENST00000517578 SVEP1Q4LDE5 3571 aa2.13□□□□□ -2.07
HMGB1P19-201ENST00000517578 STAB2Q8WWQ8 2551 aa2.12□□□□□ -2.07
HMGB1P19-201ENST00000517578 ATRQ13535 2644 aa2.12□□□□□ -2.07
HMGB1P19-201ENST00000517578 ZNF292O60281 2723 aa2.11□□□□□ -2.07
HMGB1P19-201ENST00000517578 ITPR2Q14571 2701 aa2.11□□□□□ -2.07
HMGB1P19-201ENST00000517578 ZANQ9Y493 2812 aa2.11□□□□□ -2.07
HMGB1P19-201ENST00000517578 LCE1CQ5T751 118 aa2.11□□□□□ -2.07
HMGB1P19-201ENST00000517578 LCE1BQ5T7P3 118 aa2.11□□□□□ -2.07
HMGB1P19-201ENST00000517578 ITPR3Q14573 2671 aa2.1□□□□□ -2.07
HMGB1P19-201ENST00000517578 KRTAP10-1P60331 282 aa2.1□□□□□ -2.07
HMGB1P19-201ENST00000517578 BDP1A6H8Y1 2624 aa2.1□□□□□ -2.07
HMGB1P19-201ENST00000517578 COL7A1Q02388 2944 aa2.08□□□□□ -2.08
HMGB1P19-201ENST00000517578 VPS13DQ5THJ4 4388 aa2.07□□□□□ -2.08
HMGB1P19-201ENST00000517578 PKD1L1Q8TDX9 2849 aa2.07□□□□□ -2.08
HMGB1P19-201ENST00000517578 MUC3AQ02505 3323 aa2.07□□□□□ -2.08
HMGB1P19-201ENST00000517578 BSNQ9UPA5 3926 aa2.06□□□□□ -2.08
HMGB1P19-201ENST00000517578 CSMD2Q7Z408 3487 aa2.06□□□□□ -2.08
HMGB1P19-201ENST00000517578 FLNAP21333 2647 aaKnown RBP2.05□□□□□ -2.08
HMGB1P19-201ENST00000517578 NOTCH1P46531 2555 aa2.04□□□□□ -2.08
HMGB1P19-201ENST00000517578 DNAH1Q9P2D7 4330 aa2.04□□□□□ -2.08
HMGB1P19-201ENST00000517578 MAST4O15021 2626 aa2.04□□□□□ -2.08
HMGB1P19-201ENST00000517578 TEP1Q99973 2627 aaKnown RBP2.04□□□□□ -2.08
HMGB1P19-201ENST00000517578 USP24Q9UPU5 2620 aa2.04□□□□□ -2.08
HMGB1P19-201ENST00000517578 TENM3Q9P273 2699 aa2.03□□□□□ -2.09
HMGB1P19-201ENST00000517578 ANK3Q12955 4377 aaKnown RBP2.02□□□□□ -2.09
HMGB1P19-201ENST00000517578 NSD1Q96L73 2696 aaPredicted RBP2.02□□□□□ -2.09
HMGB1P19-201ENST00000517578 VPS13CQ709C8 3753 aa2.01□□□□□ -2.09
HMGB1P19-201ENST00000517578 FLNBO75369 2602 aaKnown RBP2□□□□□ -2.09
HMGB1P19-201ENST00000517578 STAB1Q9NY15 2570 aa2□□□□□ -2.09
HMGB1P19-201ENST00000517578 TRRAPQ9Y4A5 3859 aa1.99□□□□□ -2.09
HMGB1P19-201ENST00000517578 MGAM2Q2M2H8 2515 aa1.99□□□□□ -2.09
HMGB1P19-201ENST00000517578 FBN3Q75N90 2809 aa1.99□□□□□ -2.09
HMGB1P19-201ENST00000517578 CUBNO60494 3623 aa1.98□□□□□ -2.09
HMGB1P19-201ENST00000517578 DNAH8Q96JB1 4490 aa1.98□□□□□ -2.09
HMGB1P19-201ENST00000517578 CSMD3Q7Z407 3707 aa1.97□□□□□ -2.09
HMGB1P19-201ENST00000517578 IGSF10Q6WRI0 2623 aa1.96□□□□□ -2.1
HMGB1P19-201ENST00000517578 J3QKU1 62 aa1.96□□□□□ -2.1
HMGB1P19-201ENST00000517578 KRTAP10-10P60014 251 aa1.96□□□□□ -2.1
HMGB1P19-201ENST00000517578 FRAS1Q86XX4 4008 aa1.96□□□□□ -2.1
HMGB1P19-201ENST00000517578 KRTAP5-8O75690 187 aa1.95□□□□□ -2.1
HMGB1P19-201ENST00000517578 FLNCQ14315 2725 aa1.94□□□□□ -2.1
HMGB1P19-201ENST00000517578 ANK2Q01484 3957 aa1.92□□□□□ -2.1
HMGB1P19-201ENST00000517578 DNAH17Q9UFH2 4485 aa1.92□□□□□ -2.1
HMGB1P19-201ENST00000517578 DNAH10Q8IVF4 4471 aa1.91□□□□□ -2.1
HMGB1P19-201ENST00000517578 LYSTQ99698 3801 aa1.91□□□□□ -2.1
HMGB1P19-201ENST00000517578 DNAH9Q9NYC9 4486 aa1.91□□□□□ -2.1
HMGB1P19-201ENST00000517578 KRTAP8-1Q8IUC2 63 aa1.9□□□□□ -2.11
HMGB1P19-201ENST00000517578 TENM1Q9UKZ4 2725 aa1.89□□□□□ -2.11
HMGB1P19-201ENST00000517578 DNAH3Q8TD57 4116 aa1.89□□□□□ -2.11
HMGB1P19-201ENST00000517578 DNAH11Q96DT5 4516 aa1.89□□□□□ -2.11
HMGB1P19-201ENST00000517578 DYNC2H1Q8NCM8 4307 aaKnown RBP1.89□□□□□ -2.11
HMGB1P19-201ENST00000517578 CMYA5Q8N3K9 4069 aa1.89□□□□□ -2.11
HMGB1P19-201ENST00000517578 LCE3DQ9BYE3 92 aa1.88□□□□□ -2.11
HMGB1P19-201ENST00000517578 DNAH6Q9C0G6 4158 aa1.86□□□□□ -2.11
HMGB1P19-201ENST00000517578 HUWE1Q7Z6Z7 4374 aaKnown RBP1.85□□□□□ -2.11
HMGB1P19-201ENST00000517578 DNAH2Q9P225 4427 aa1.85□□□□□ -2.11
HMGB1P19-201ENST00000517578 M0R2T5 61 aa1.83□□□□□ -2.12
HMGB1P19-201ENST00000517578 SMR3BP02814 79 aaPredicted RBP1.83□□□□□ -2.12
HMGB1P19-201ENST00000517578 KRTAP10-4P60372 401 aaPredicted RBP1.83□□□□□ -2.12
HMGB1P19-201ENST00000517578 PRKDCP78527 4128 aaKnown RBP1.81□□□□□ -2.12
HMGB1P19-201ENST00000517578 KRTAP12-3P60328 96 aa1.81□□□□□ -2.12
HMGB1P19-201ENST00000517578 MYCBP2O75592 4640 aa1.8□□□□□ -2.12
HMGB1P19-201ENST00000517578 HECTD4Q9Y4D8 3996 aa1.79□□□□□ -2.12
HMGB1P19-201ENST00000517578 DNAH7Q8WXX0 4024 aa1.79□□□□□ -2.12
HMGB1P19-201ENST00000517578 KMT2AQ03164 3969 aa1.79□□□□□ -2.12
HMGB1P19-201ENST00000517578 KRTAP2-3P0C7H8 128 aa1.77□□□□□ -2.13
HMGB1P19-201ENST00000517578 KRTAP2-4Q9BYR9 128 aa1.77□□□□□ -2.13
HMGB1P19-201ENST00000517578 KRTAP2-1Q9BYU5 128 aa1.77□□□□□ -2.13
HMGB1P19-201ENST00000517578 MUC19Q7Z5P9 8384 aa1.77□□□□□ -2.13
HMGB1P19-201ENST00000517578 SACSQ9NZJ4 4579 aa1.76□□□□□ -2.13
HMGB1P19-201ENST00000517578 ZNF469Q96JG9 3925 aaPredicted RBP1.75□□□□□ -2.13
HMGB1P19-201ENST00000517578 KRTAP5-7Q6L8G8 165 aa1.75□□□□□ -2.13
HMGB1P19-201ENST00000517578 SPRR2GQ9BYE4 73 aa1.74□□□□□ -2.13
HMGB1P19-201ENST00000517578 PKD1P98161 4303 aa1.72□□□□□ -2.13
HMGB1P19-201ENST00000517578 APOBP04114 4563 aaKnown RBP1.72□□□□□ -2.13
HMGB1P19-201ENST00000517578 LRP1Q07954 4544 aaKnown RBP1.72□□□□□ -2.13
HMGB1P19-201ENST00000517578 STARD9Q9P2P6 4700 aa1.71□□□□□ -2.14
HMGB1P19-201ENST00000517578 LRP1BQ9NZR2 4599 aa1.7□□□□□ -2.14
HMGB1P19-201ENST00000517578 HSPG2P98160 4391 aa1.67□□□□□ -2.14
HMGB1P19-201ENST00000517578 PKHD1L1Q86WI1 4243 aa1.67□□□□□ -2.14
HMGB1P19-201ENST00000517578 PKHD1P08F94 4074 aa1.66□□□□□ -2.14
HMGB1P19-201ENST00000517578 VPS13BQ7Z7G8 4022 aa1.66□□□□□ -2.14
HMGB1P19-201ENST00000517578 PLECQ15149 4684 aaKnown RBP1.65□□□□□ -2.14
HMGB1P19-201ENST00000517578 DNAH5Q8TE73 4624 aa1.65□□□□□ -2.15
HMGB1P19-201ENST00000517578 FAT2Q9NYQ8 4349 aa1.65□□□□□ -2.15
HMGB1P19-201ENST00000517578 KRTAP12-4P60329 112 aa1.64□□□□□ -2.15
HMGB1P19-201ENST00000517578 FLGP20930 4061 aaPredicted RBP1.64□□□□□ -2.15
HMGB1P19-201ENST00000517578 DYNC1H1Q14204 4646 aaKnown RBP1.63□□□□□ -2.15
HMGB1P19-201ENST00000517578 MT1HL1P0DM35 61 aa1.63□□□□□ -2.15
HMGB1P19-201ENST00000517578 TNXBP22105 4242 aa1.61□□□□□ -2.15
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms