RNA–Protein interactions for RNA: ENST00000513352.1

NUP54-213, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 579 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-213ENST00000513352 SNURFQ9Y675 71 aa7.31□□□□□ -1.24
NUP54-213ENST00000513352 C20orf197Q8N268 126 aa7.3□□□□□ -1.24
NUP54-213ENST00000513352 S4R3F8 94 aa7.29□□□□□ -1.24
NUP54-213ENST00000513352 ANAPC13Q9BS18 74 aa7.25□□□□□ -1.25
NUP54-213ENST00000513352 COX7CP15954 63 aa7.24□□□□□ -1.25
NUP54-213ENST00000513352 A8MUN3 132 aa7.23□□□□□ -1.25
NUP54-213ENST00000513352 LCA10Q71F78 164 aa7.21□□□□□ -1.26
NUP54-213ENST00000513352 DMAC1Q96GE9 116 aa7.17□□□□□ -1.26
NUP54-213ENST00000513352 CSAG1Q6PB30 78 aa7.15□□□□□ -1.26
NUP54-213ENST00000513352 NDUFC1O43677 76 aa7.13□□□□□ -1.27
NUP54-213ENST00000513352 LCE3BQ5TA77 95 aa7.13□□□□□ -1.27
NUP54-213ENST00000513352 KRTAP9-8Q9BYQ0 159 aa7.13□□□□□ -1.27
NUP54-213ENST00000513352 MT2AP02795 61 aa7.11□□□□□ -1.27
NUP54-213ENST00000513352 ACYP2P14621 99 aa7.1□□□□□ -1.27
NUP54-213ENST00000513352 SPANXA2-OT1Q8N9U9 137 aa7.09□□□□□ -1.27
NUP54-213ENST00000513352 KRTAP10-10P60014 251 aa7.08□□□□□ -1.28
NUP54-213ENST00000513352 CCDC179H3BU77 68 aa7.06□□□□□ -1.28
NUP54-213ENST00000513352 MT1FP04733 61 aa7.06□□□□□ -1.28
NUP54-213ENST00000513352 CYSTM1Q9H1C7 97 aa7.06□□□□□ -1.28
NUP54-213ENST00000513352 CHKB-CPT1BH3BT56 60 aa7.03□□□□□ -1.28
NUP54-213ENST00000513352 H7BZZ5 65 aa7.03□□□□□ -1.28
NUP54-213ENST00000513352 KRTAP4-12Q9BQ66 201 aa7.01□□□□□ -1.29
NUP54-213ENST00000513352 KRTAP9-9Q9BYP9 154 aa7□□□□□ -1.29
NUP54-213ENST00000513352 KRTAP9-4Q9BYQ2 154 aa7□□□□□ -1.29
NUP54-213ENST00000513352 SPTSSBQ8NFR3 76 aa6.97□□□□□ -1.29
NUP54-213ENST00000513352 KRTAP4-8A0A0G2JLE6 195 aa6.96□□□□□ -1.3
NUP54-213ENST00000513352 COA5Q86WW8 74 aa6.92□□□□□ -1.3
NUP54-213ENST00000513352 ADM2Q7Z4H4 148 aa6.9□□□□□ -1.3
NUP54-213ENST00000513352 KRTAP9-3Q9BYQ3 159 aa6.9□□□□□ -1.3
NUP54-213ENST00000513352 H0YAA0 97 aa6.88□□□□□ -1.31
NUP54-213ENST00000513352 ATP5EP56381 51 aaPredicted RBP6.84□□□□□ -1.31
NUP54-213ENST00000513352 TMEM258P61165 79 aa6.81□□□□□ -1.32
NUP54-213ENST00000513352 KRTAP19-1Q8IUB9 90 aa6.78□□□□□ -1.32
NUP54-213ENST00000513352 P0C880 135 aa6.77□□□□□ -1.33
NUP54-213ENST00000513352 CRIPTQ9P021 101 aa6.77□□□□□ -1.33
NUP54-213ENST00000513352 KRTAP4-7Q9BYR0 210 aa6.74□□□□□ -1.33
NUP54-213ENST00000513352 PCP4P48539 62 aa6.73□□□□□ -1.33
NUP54-213ENST00000513352 SPRR2GQ9BYE4 73 aa6.71□□□□□ -1.34
NUP54-213ENST00000513352 R4GN34 69 aa6.7□□□□□ -1.34
NUP54-213ENST00000513352 SEC61GP60059 68 aa6.68□□□□□ -1.34
NUP54-213ENST00000513352 M0QZ58 72 aa6.67□□□□□ -1.34
NUP54-213ENST00000513352 CRCT1Q9UGL9 99 aa6.67□□□□□ -1.34
NUP54-213ENST00000513352 LCE1DQ5T752 114 aa6.65□□□□□ -1.34
NUP54-213ENST00000513352 SERP1Q9Y6X1 66 aa6.65□□□□□ -1.34
NUP54-213ENST00000513352 Q5VV11 94 aa6.64□□□□□ -1.35
NUP54-213ENST00000513352 USH2AO75445 5202 aa6.64□□□□□ -1.35
NUP54-213ENST00000513352 FSIP2Q5CZC0 6907 aa6.63□□□□□ -1.35
NUP54-213ENST00000513352 KRTAP19-8Q3LI54 63 aa6.61□□□□□ -1.35
NUP54-213ENST00000513352 LINC01554Q52M75 96 aa6.59□□□□□ -1.35
NUP54-213ENST00000513352 A0A1B0GU69 56 aa6.58□□□□□ -1.36
NUP54-213ENST00000513352 MT1BP07438 61 aa6.56□□□□□ -1.36
NUP54-213ENST00000513352 KRTAP19-4Q3LI73 84 aa6.54□□□□□ -1.36
NUP54-213ENST00000513352 PRR15LQ9BU68 103 aa6.5□□□□□ -1.37
NUP54-213ENST00000513352 KRTAP4-9Q9BYQ8 210 aa6.5□□□□□ -1.37
NUP54-213ENST00000513352 A0A1B0GU33 70 aa6.49□□□□□ -1.37
NUP54-213ENST00000513352 SSPOA2VEC9 5147 aa6.48□□□□□ -1.37
NUP54-213ENST00000513352 KRTAP19-6Q3LI70 58 aa6.48□□□□□ -1.37
NUP54-213ENST00000513352 PLAC4Q8WY50 150 aa6.48□□□□□ -1.37
NUP54-213ENST00000513352 LINC01558Q9Y6Z2 57 aa6.48□□□□□ -1.37
NUP54-213ENST00000513352 KRTAP13-4Q3LI77 160 aa6.47□□□□□ -1.37
NUP54-213ENST00000513352 KRTAP4-2Q9BYR5 136 aa6.47□□□□□ -1.37
NUP54-213ENST00000513352 SPATA8Q6RVD6 105 aa6.43□□□□□ -1.38
NUP54-213ENST00000513352 A6NN06 94 aa6.4□□□□□ -1.38
NUP54-213ENST00000513352 SVIPQ8NHG7 77 aa6.4□□□□□ -1.38
NUP54-213ENST00000513352 A0A0D9SG42 100 aa6.39□□□□□ -1.39
NUP54-213ENST00000513352 V9GYY9 64 aa6.37□□□□□ -1.39
NUP54-213ENST00000513352 SMIM26A0A096LP01 95 aa6.36□□□□□ -1.39
NUP54-213ENST00000513352 KRTAP23-1A1A580 65 aa6.35□□□□□ -1.39
NUP54-213ENST00000513352 KRTAP10-5P60370 271 aa6.34□□□□□ -1.39
NUP54-213ENST00000513352 FCGBPQ9Y6R7 5405 aaPredicted RBP6.33□□□□□ -1.4
NUP54-213ENST00000513352 RPS28P62857 69 aaKnown RBP6.32□□□□□ -1.4
NUP54-213ENST00000513352 Q1T7F1 81 aa6.31□□□□□ -1.4
NUP54-213ENST00000513352 PSPHP1O15172 72 aa6.3□□□□□ -1.4
NUP54-213ENST00000513352 PRO2289Q9P1D8 64 aa6.3□□□□□ -1.4
NUP54-213ENST00000513352 A8MU10 97 aa6.27□□□□□ -1.41
NUP54-213ENST00000513352 UQCR11O14957 56 aa6.27□□□□□ -1.41
NUP54-213ENST00000513352 SPINT4Q6UDR6 99 aa6.27□□□□□ -1.41
NUP54-213ENST00000513352 MT1XP80297 61 aa6.25□□□□□ -1.41
NUP54-213ENST00000513352 CAMK2N1Q7Z7J9 78 aa6.25□□□□□ -1.41
NUP54-213ENST00000513352 KRTAP12-1P59990 96 aa6.21□□□□□ -1.42
NUP54-213ENST00000513352 KRTAP4-11Q9BYQ6 195 aa6.21□□□□□ -1.42
NUP54-213ENST00000513352 KRTAP12-2P59991 146 aa6.18□□□□□ -1.42
NUP54-213ENST00000513352 MIR22HGQ0VDD5 57 aa6.18□□□□□ -1.42
NUP54-213ENST00000513352 LCE4AQ5TA78 99 aa6.13□□□□□ -1.43
NUP54-213ENST00000513352 A6NED7 52 aa6.12□□□□□ -1.43
NUP54-213ENST00000513352 KRTAP9-7A8MTY7 169 aa6.1□□□□□ -1.43
NUP54-213ENST00000513352 KRTAP5-3Q6L8H2 238 aa6.04□□□□□ -1.44
NUP54-213ENST00000513352 K7ERS5 55 aa6.01□□□□□ -1.45
NUP54-213ENST00000513352 MACF1Q9UPN3 7388 aaKnown RBP6.01□□□□□ -1.45
NUP54-213ENST00000513352 KRTAP10-7P60409 375 aaPredicted RBP6□□□□□ -1.45
NUP54-213ENST00000513352 KRTAP10-12P60413 245 aa5.93□□□□□ -1.46
NUP54-213ENST00000513352 KRTAP6-3Q3LI67 103 aa5.9□□□□□ -1.46
NUP54-213ENST00000513352 C10orf95Q9H7T3 257 aa5.89□□□□□ -1.47
NUP54-213ENST00000513352 CDC42SE1Q9NRR8 79 aa5.89□□□□□ -1.47
NUP54-213ENST00000513352 KRTAP8-1Q8IUC2 63 aa5.88□□□□□ -1.47
NUP54-213ENST00000513352 SYNE2Q8WXH0 6885 aaKnown RBP5.85□□□□□ -1.47
NUP54-213ENST00000513352 LCE5AQ5TCM9 118 aa5.85□□□□□ -1.47
NUP54-213ENST00000513352 TNP1P09430 55 aa5.83□□□□□ -1.48
NUP54-213ENST00000513352 KMT2DO14686 5537 aa5.82□□□□□ -1.48
NUP54-213ENST00000513352 SPRR2FQ96RM1 72 aa5.77□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 82.2 ms