RNA–Protein interactions for RNA: ENST00000509769.5

USP53-205, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-205ENST00000509769 HYDINQ4G0P3 5121 aa1.73□□□□□ -2.13
USP53-205ENST00000509769 KRTAP10-2P60368 255 aa1.73□□□□□ -2.13
USP53-205ENST00000509769 CRYBG3Q68DQ2 2970 aa1.73□□□□□ -2.13
USP53-205ENST00000509769 HECTD4Q9Y4D8 3996 aa1.73□□□□□ -2.13
USP53-205ENST00000509769 PRRC2CQ9Y520 2896 aaKnown RBP1.73□□□□□ -2.13
USP53-205ENST00000509769 HERC1Q15751 4861 aa1.72□□□□□ -2.13
USP53-205ENST00000509769 TRRAPQ9Y4A5 3859 aa1.72□□□□□ -2.13
USP53-205ENST00000509769 DMBT1Q9UGM3 2413 aaPredicted RBP1.72□□□□□ -2.13
USP53-205ENST00000509769 HUWE1Q7Z6Z7 4374 aaKnown RBP1.71□□□□□ -2.14
USP53-205ENST00000509769 ATMQ13315 3056 aa1.71□□□□□ -2.14
USP53-205ENST00000509769 KMT2AQ03164 3969 aa1.71□□□□□ -2.14
USP53-205ENST00000509769 TENM3Q9P273 2699 aa1.71□□□□□ -2.14
USP53-205ENST00000509769 DNAH17Q9UFH2 4485 aa1.71□□□□□ -2.14
USP53-205ENST00000509769 FAT2Q9NYQ8 4349 aa1.71□□□□□ -2.14
USP53-205ENST00000509769 ABCA13Q86UQ4 5058 aa1.71□□□□□ -2.14
USP53-205ENST00000509769 SPENQ96T58 3664 aaKnown RBP1.7□□□□□ -2.14
USP53-205ENST00000509769 DMDP11532 3685 aa1.7□□□□□ -2.14
USP53-205ENST00000509769 FREM2Q5SZK8 3169 aa1.7□□□□□ -2.14
USP53-205ENST00000509769 CMYA5Q8N3K9 4069 aa1.7□□□□□ -2.14
USP53-205ENST00000509769 KRTAP1-4P0C5Y4 121 aa1.7□□□□□ -2.14
USP53-205ENST00000509769 PKHD1L1Q86WI1 4243 aa1.69□□□□□ -2.14
USP53-205ENST00000509769 RELNP78509 3460 aa1.69□□□□□ -2.14
USP53-205ENST00000509769 MT3P25713 68 aa1.69□□□□□ -2.14
USP53-205ENST00000509769 ZANQ9Y493 2812 aa1.69□□□□□ -2.14
USP53-205ENST00000509769 PLECQ15149 4684 aaKnown RBP1.68□□□□□ -2.14
USP53-205ENST00000509769 VPS13AQ96RL7 3174 aa1.68□□□□□ -2.14
USP53-205ENST00000509769 KRTAP4-2Q9BYR5 136 aa1.68□□□□□ -2.14
USP53-205ENST00000509769 KRTAP5-3Q6L8H2 238 aa1.68□□□□□ -2.14
USP53-205ENST00000509769 STAB2Q8WWQ8 2551 aa1.67□□□□□ -2.14
USP53-205ENST00000509769 VWFP04275 2813 aa1.67□□□□□ -2.14
USP53-205ENST00000509769 CELSR1Q9NYQ6 3014 aa1.67□□□□□ -2.14
USP53-205ENST00000509769 KRTAP19-1Q8IUB9 90 aa1.66□□□□□ -2.14
USP53-205ENST00000509769 DNAH2Q9P225 4427 aa1.66□□□□□ -2.14
USP53-205ENST00000509769 DCHS2Q6V1P9 2916 aa1.66□□□□□ -2.14
USP53-205ENST00000509769 KRTAP9-8Q9BYQ0 159 aa1.66□□□□□ -2.14
USP53-205ENST00000509769 ASPMQ8IZT6 3477 aa1.66□□□□□ -2.14
USP53-205ENST00000509769 KRTAP10-6P60371 365 aaPredicted RBP1.65□□□□□ -2.14
USP53-205ENST00000509769 VPS13BQ7Z7G8 4022 aa1.65□□□□□ -2.15
USP53-205ENST00000509769 WDFY3Q8IZQ1 3526 aa1.65□□□□□ -2.15
USP53-205ENST00000509769 VPS13CQ709C8 3753 aa1.65□□□□□ -2.15
USP53-205ENST00000509769 LOC400499M0QZD8 3231 aa1.64□□□□□ -2.15
USP53-205ENST00000509769 KRTAP20-1Q3LI63 56 aa1.64□□□□□ -2.15
USP53-205ENST00000509769 PKHD1P08F94 4074 aa1.64□□□□□ -2.15
USP53-205ENST00000509769 BOD1L1Q8NFC6 3051 aa1.64□□□□□ -2.15
USP53-205ENST00000509769 KRTAP4-8A0A0G2JLE6 195 aa1.64□□□□□ -2.15
USP53-205ENST00000509769 MT1HL1P0DM35 61 aa1.63□□□□□ -2.15
USP53-205ENST00000509769 CSMD2Q7Z408 3487 aa1.63□□□□□ -2.15
USP53-205ENST00000509769 KRTAP10-10P60014 251 aa1.62□□□□□ -2.15
USP53-205ENST00000509769 CSMD1Q96PZ7 3565 aa1.62□□□□□ -2.15
USP53-205ENST00000509769 HRNRQ86YZ3 2850 aaPredicted RBP1.62□□□□□ -2.15
USP53-205ENST00000509769 MYCBP2O75592 4640 aa1.61□□□□□ -2.15
USP53-205ENST00000509769 CELSR3Q9NYQ7 3312 aa1.61□□□□□ -2.15
USP53-205ENST00000509769 KRTAP3-1Q9BYR8 98 aa1.6□□□□□ -2.15
USP53-205ENST00000509769 FRAS1Q86XX4 4008 aa1.6□□□□□ -2.15
USP53-205ENST00000509769 KRTAP6-3Q3LI67 103 aa1.59□□□□□ -2.16
USP53-205ENST00000509769 KRTAP4-7Q9BYR0 210 aa1.59□□□□□ -2.16
USP53-205ENST00000509769 LAMA5O15230 3695 aa1.58□□□□□ -2.16
USP53-205ENST00000509769 LYSTQ99698 3801 aa1.58□□□□□ -2.16
USP53-205ENST00000509769 HSPG2P98160 4391 aa1.57□□□□□ -2.16
USP53-205ENST00000509769 KRTAP10-4P60372 401 aaPredicted RBP1.57□□□□□ -2.16
USP53-205ENST00000509769 KRTAP10-12P60413 245 aa1.57□□□□□ -2.16
USP53-205ENST00000509769 UBR4Q5T4S7 5183 aa1.57□□□□□ -2.16
USP53-205ENST00000509769 ZNF469Q96JG9 3925 aaPredicted RBP1.57□□□□□ -2.16
USP53-205ENST00000509769 KRTAP12-3P60328 96 aa1.57□□□□□ -2.16
USP53-205ENST00000509769 VPS13DQ5THJ4 4388 aa1.57□□□□□ -2.16
USP53-205ENST00000509769 TACC2O95359 2948 aa1.56□□□□□ -2.16
USP53-205ENST00000509769 FAT1Q14517 4588 aa1.56□□□□□ -2.16
USP53-205ENST00000509769 APOBP04114 4563 aaKnown RBP1.55□□□□□ -2.16
USP53-205ENST00000509769 FAT4Q6V0I7 4981 aa1.55□□□□□ -2.16
USP53-205ENST00000509769 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.54□□□□□ -2.16
USP53-205ENST00000509769 HMCN2Q8NDA2 5059 aa1.54□□□□□ -2.16
USP53-205ENST00000509769 LAMA1P25391 3075 aa1.54□□□□□ -2.16
USP53-205ENST00000509769 DNAH5Q8TE73 4624 aa1.53□□□□□ -2.16
USP53-205ENST00000509769 STARD9Q9P2P6 4700 aa1.53□□□□□ -2.16
USP53-205ENST00000509769 RNF213Q63HN8 5207 aa1.53□□□□□ -2.16
USP53-205ENST00000509769 KRTAP2-3P0C7H8 128 aa1.53□□□□□ -2.16
USP53-205ENST00000509769 KRTAP2-4Q9BYR9 128 aa1.53□□□□□ -2.16
USP53-205ENST00000509769 KRTAP4-9Q9BYQ8 210 aa1.52□□□□□ -2.17
USP53-205ENST00000509769 COL7A1Q02388 2944 aa1.51□□□□□ -2.17
USP53-205ENST00000509769 DNAH8Q96JB1 4490 aa1.51□□□□□ -2.17
USP53-205ENST00000509769 TNXBP22105 4242 aa1.49□□□□□ -2.17
USP53-205ENST00000509769 SSPOA2VEC9 5147 aa1.49□□□□□ -2.17
USP53-205ENST00000509769 CUBNO60494 3623 aa1.48□□□□□ -2.17
USP53-205ENST00000509769 MUC17Q685J3 4493 aa1.48□□□□□ -2.17
USP53-205ENST00000509769 LCE3AQ5TA76 89 aa1.46□□□□□ -2.18
USP53-205ENST00000509769 NEBP20929 6669 aa1.45□□□□□ -2.18
USP53-205ENST00000509769 SPRR5A0A1B0GTR4 108 aa1.45□□□□□ -2.18
USP53-205ENST00000509769 PKD1P98161 4303 aa1.44□□□□□ -2.18
USP53-205ENST00000509769 KRTAP2-2Q9BYT5 123 aa1.44□□□□□ -2.18
USP53-205ENST00000509769 KRTAP2-1Q9BYU5 128 aa1.44□□□□□ -2.18
USP53-205ENST00000509769 SRRM2Q9UQ35 2752 aaKnown RBP1.44□□□□□ -2.18
USP53-205ENST00000509769 KRTAP10-5P60370 271 aa1.44□□□□□ -2.18
USP53-205ENST00000509769 MT1HP80294 61 aa1.44□□□□□ -2.18
USP53-205ENST00000509769 KRTAP4-11Q9BYQ6 195 aa1.43□□□□□ -2.18
USP53-205ENST00000509769 KRTAP5-2Q701N4 177 aa1.42□□□□□ -2.18
USP53-205ENST00000509769 KRTAP8-1Q8IUC2 63 aa1.41□□□□□ -2.18
USP53-205ENST00000509769 KRTAP19-6Q3LI70 58 aa1.41□□□□□ -2.18
USP53-205ENST00000509769 LRP1Q07954 4544 aaKnown RBP1.4□□□□□ -2.19
USP53-205ENST00000509769 KRTAP5-9P26371 169 aa1.4□□□□□ -2.19
USP53-205ENST00000509769 LCE4AQ5TA78 99 aa1.4□□□□□ -2.19
Retrieved 100 of 20,778 RNA–protein pairs in 124.6 ms