RNA–Protein interactions for RNA: ENST00000503427.5

HMGXB3-202, Transcript of HMG-box containing 3, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene HMGXB3, Length 5,275 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGXB3-202ENST00000503427 KRTAP10-12P60413 245 aa7.08□□□□□ -1.28
HMGXB3-202ENST00000503427 KRTAP23-1A1A580 65 aa7.05□□□□□ -1.28
HMGXB3-202ENST00000503427 DNAH1Q9P2D7 4330 aa7.01□□□□□ -1.29
HMGXB3-202ENST00000503427 PLECQ15149 4684 aaKnown RBP6.99□□□□□ -1.29
HMGXB3-202ENST00000503427 DNAH10Q8IVF4 4471 aa6.97□□□□□ -1.29
HMGXB3-202ENST00000503427 DNAH11Q96DT5 4516 aa6.96□□□□□ -1.3
HMGXB3-202ENST00000503427 VPS13DQ5THJ4 4388 aa6.93□□□□□ -1.3
HMGXB3-202ENST00000503427 KRTAP12-3P60328 96 aa6.93□□□□□ -1.3
HMGXB3-202ENST00000503427 LORP23490 312 aaPredicted RBP6.9□□□□□ -1.3
HMGXB3-202ENST00000503427 DNAH17Q9UFH2 4485 aa6.88□□□□□ -1.31
HMGXB3-202ENST00000503427 CSMD3Q7Z407 3707 aa6.87□□□□□ -1.31
HMGXB3-202ENST00000503427 LCE3AQ5TA76 89 aa6.86□□□□□ -1.31
HMGXB3-202ENST00000503427 DYNC1H1Q14204 4646 aaKnown RBP6.8□□□□□ -1.32
HMGXB3-202ENST00000503427 RYR1P21817 5038 aa6.78□□□□□ -1.32
HMGXB3-202ENST00000503427 KRTAP4-1Q9BYQ7 146 aa6.77□□□□□ -1.33
HMGXB3-202ENST00000503427 DNAH2Q9P225 4427 aa6.75□□□□□ -1.33
HMGXB3-202ENST00000503427 STARD9Q9P2P6 4700 aa6.73□□□□□ -1.33
HMGXB3-202ENST00000503427 LRP1BQ9NZR2 4599 aa6.72□□□□□ -1.33
HMGXB3-202ENST00000503427 CRCT1Q9UGL9 99 aa6.71□□□□□ -1.34
HMGXB3-202ENST00000503427 PRKDCP78527 4128 aaKnown RBP6.68□□□□□ -1.34
HMGXB3-202ENST00000503427 DYNC2H1Q8NCM8 4307 aaKnown RBP6.66□□□□□ -1.34
HMGXB3-202ENST00000503427 MT1HP80294 61 aa6.65□□□□□ -1.34
HMGXB3-202ENST00000503427 FAT1Q14517 4588 aa6.65□□□□□ -1.35
HMGXB3-202ENST00000503427 FAT2Q9NYQ8 4349 aa6.62□□□□□ -1.35
HMGXB3-202ENST00000503427 DNAH3Q8TD57 4116 aa6.62□□□□□ -1.35
HMGXB3-202ENST00000503427 SACSQ9NZJ4 4579 aa6.59□□□□□ -1.35
HMGXB3-202ENST00000503427 KIAA1109Q2LD37 5005 aa6.59□□□□□ -1.35
HMGXB3-202ENST00000503427 ANK2Q01484 3957 aa6.57□□□□□ -1.36
HMGXB3-202ENST00000503427 MT2AP02795 61 aa6.55□□□□□ -1.36
HMGXB3-202ENST00000503427 RYR3Q15413 4870 aa6.55□□□□□ -1.36
HMGXB3-202ENST00000503427 SPRR2GQ9BYE4 73 aa6.54□□□□□ -1.36
HMGXB3-202ENST00000503427 KRTAP17-1Q9BYP8 105 aa6.5□□□□□ -1.37
HMGXB3-202ENST00000503427 KRTAP8-1Q8IUC2 63 aa6.48□□□□□ -1.37
HMGXB3-202ENST00000503427 DNAH8Q96JB1 4490 aa6.46□□□□□ -1.38
HMGXB3-202ENST00000503427 BIRC6Q9NR09 4857 aa6.45□□□□□ -1.38
HMGXB3-202ENST00000503427 MT1FP04733 61 aa6.41□□□□□ -1.38
HMGXB3-202ENST00000503427 APOBP04114 4563 aaKnown RBP6.38□□□□□ -1.39
HMGXB3-202ENST00000503427 KMT2AQ03164 3969 aa6.37□□□□□ -1.39
HMGXB3-202ENST00000503427 DNAH6Q9C0G6 4158 aa6.35□□□□□ -1.39
HMGXB3-202ENST00000503427 KRTAP10-5P60370 271 aa6.34□□□□□ -1.39
HMGXB3-202ENST00000503427 HERC2O95714 4834 aa6.32□□□□□ -1.4
HMGXB3-202ENST00000503427 VPS13BQ7Z7G8 4022 aa6.31□□□□□ -1.4
HMGXB3-202ENST00000503427 RYR2Q92736 4967 aa6.27□□□□□ -1.41
HMGXB3-202ENST00000503427 LYSTQ99698 3801 aa6.24□□□□□ -1.41
HMGXB3-202ENST00000503427 CMYA5Q8N3K9 4069 aa6.19□□□□□ -1.42
HMGXB3-202ENST00000503427 FAT3Q8TDW7 4589 aa6.16□□□□□ -1.42
HMGXB3-202ENST00000503427 DNAH7Q8WXX0 4024 aa6.15□□□□□ -1.42
HMGXB3-202ENST00000503427 KRTAP19-8Q3LI54 63 aa6.14□□□□□ -1.43
HMGXB3-202ENST00000503427 MYCBP2O75592 4640 aa6.14□□□□□ -1.43
HMGXB3-202ENST00000503427 KRTAP19-5Q3LI72 72 aa6.13□□□□□ -1.43
HMGXB3-202ENST00000503427 SPRR2FQ96RM1 72 aa6.13□□□□□ -1.43
HMGXB3-202ENST00000503427 HYDINQ4G0P3 5121 aa6.13□□□□□ -1.43
HMGXB3-202ENST00000503427 KRTAP19-1Q8IUB9 90 aa6.11□□□□□ -1.43
HMGXB3-202ENST00000503427 PCLOQ9Y6V0 5065 aa6.1□□□□□ -1.43
HMGXB3-202ENST00000503427 LCE3CQ5T5A8 94 aa6.1□□□□□ -1.43
HMGXB3-202ENST00000503427 LRP1Q07954 4544 aaKnown RBP6.08□□□□□ -1.44
HMGXB3-202ENST00000503427 KRTAP19-4Q3LI73 84 aa6.08□□□□□ -1.44
HMGXB3-202ENST00000503427 HECTD4Q9Y4D8 3996 aa6.06□□□□□ -1.44
HMGXB3-202ENST00000503427 FRAS1Q86XX4 4008 aa5.95□□□□□ -1.46
HMGXB3-202ENST00000503427 KRTAP9-8Q9BYQ0 159 aa5.94□□□□□ -1.46
HMGXB3-202ENST00000503427 KRTAP10-7P60409 375 aaPredicted RBP5.94□□□□□ -1.46
HMGXB3-202ENST00000503427 KMT2CQ8NEZ4 4911 aaKnown RBP5.93□□□□□ -1.46
HMGXB3-202ENST00000503427 HSPG2P98160 4391 aa5.93□□□□□ -1.46
HMGXB3-202ENST00000503427 HERC1Q15751 4861 aa5.92□□□□□ -1.46
HMGXB3-202ENST00000503427 LCE2CQ5TA81 110 aa5.91□□□□□ -1.46
HMGXB3-202ENST00000503427 MT1XP80297 61 aa5.9□□□□□ -1.47
HMGXB3-202ENST00000503427 MT1BP07438 61 aa5.89□□□□□ -1.47
HMGXB3-202ENST00000503427 SPRR2EP22531 72 aa5.84□□□□□ -1.47
HMGXB3-202ENST00000503427 SPRR2BP35325 72 aa5.84□□□□□ -1.47
HMGXB3-202ENST00000503427 SPRR2AP35326 72 aa5.84□□□□□ -1.47
HMGXB3-202ENST00000503427 PKD1P98161 4303 aa5.84□□□□□ -1.48
HMGXB3-202ENST00000503427 LRP2P98164 4655 aa5.83□□□□□ -1.48
HMGXB3-202ENST00000503427 EPPK1P58107 5090 aaKnown RBP5.81□□□□□ -1.48
HMGXB3-202ENST00000503427 KRTAP9-3Q9BYQ3 159 aa5.8□□□□□ -1.48
HMGXB3-202ENST00000503427 KRTAP9-2Q9BYQ4 174 aa5.79□□□□□ -1.48
HMGXB3-202ENST00000503427 PKHD1P08F94 4074 aa5.76□□□□□ -1.49
HMGXB3-202ENST00000503427 SPRR5A0A1B0GTR4 108 aa5.75□□□□□ -1.49
HMGXB3-202ENST00000503427 PKHD1L1Q86WI1 4243 aa5.73□□□□□ -1.49
HMGXB3-202ENST00000503427 ABCA13Q86UQ4 5058 aa5.7□□□□□ -1.5
HMGXB3-202ENST00000503427 KRTAP19-2Q3LHN2 52 aa5.69□□□□□ -1.5
HMGXB3-202ENST00000503427 SPRR2DP22532 72 aa5.66□□□□□ -1.5
HMGXB3-202ENST00000503427 UBR4Q5T4S7 5183 aa5.61□□□□□ -1.51
HMGXB3-202ENST00000503427 KRTAP9-6A0A140TA67 174 aa5.6□□□□□ -1.51
HMGXB3-202ENST00000503427 FSIP2Q5CZC0 6907 aa5.58□□□□□ -1.52
HMGXB3-202ENST00000503427 KRTAP4-8A0A0G2JLE6 195 aa5.57□□□□□ -1.52
HMGXB3-202ENST00000503427 KRTAP4-8Q9BYQ9 185 aa5.57□□□□□ -1.52
HMGXB3-202ENST00000503427 MT1GP13640 62 aa5.57□□□□□ -1.52
HMGXB3-202ENST00000503427 LCE2BO14633 110 aa5.55□□□□□ -1.52
HMGXB3-202ENST00000503427 LPAP08519 4548 aa5.55□□□□□ -1.52
HMGXB3-202ENST00000503427 LCE3BQ5TA77 95 aa5.53□□□□□ -1.52
HMGXB3-202ENST00000503427 TNXBP22105 4242 aa5.52□□□□□ -1.53
HMGXB3-202ENST00000503427 KRTAP12-4P60329 112 aa5.52□□□□□ -1.53
HMGXB3-202ENST00000503427 MUC17Q685J3 4493 aa5.49□□□□□ -1.53
HMGXB3-202ENST00000503427 FLGP20930 4061 aaPredicted RBP5.44□□□□□ -1.54
HMGXB3-202ENST00000503427 LCE2DQ5TA82 110 aaPredicted RBP5.43□□□□□ -1.54
HMGXB3-202ENST00000503427 RNF213Q63HN8 5207 aa5.42□□□□□ -1.54
HMGXB3-202ENST00000503427 LCE2AQ5TA79 106 aaPredicted RBP5.42□□□□□ -1.54
HMGXB3-202ENST00000503427 KRTAP19-3Q7Z4W3 81 aa5.37□□□□□ -1.55
HMGXB3-202ENST00000503427 FAT4Q6V0I7 4981 aa5.33□□□□□ -1.56
HMGXB3-202ENST00000503427 MT1LQ93083 61 aa5.32□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms