RNA–Protein interactions for RNA: ENST00000496458.1

SF3B1-212, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 475 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-212ENST00000496458 TRGV1A0A0A0MS02 117 aa2.08□□□□□ -2.08
SF3B1-212ENST00000496458 ACYP2P14621 99 aa2.08□□□□□ -2.08
SF3B1-212ENST00000496458 DEFB1P60022 68 aa2.08□□□□□ -2.08
SF3B1-212ENST00000496458 KRTAP13-4Q3LI77 160 aa2.08□□□□□ -2.08
SF3B1-212ENST00000496458 KMT2CQ8NEZ4 4911 aaKnown RBP2.08□□□□□ -2.08
SF3B1-212ENST00000496458 PLECQ15149 4684 aaKnown RBP2.08□□□□□ -2.08
SF3B1-212ENST00000496458 DEFB135Q30KP9 77 aa2.07□□□□□ -2.08
SF3B1-212ENST00000496458 STARD9Q9P2P6 4700 aa2.07□□□□□ -2.08
SF3B1-212ENST00000496458 DYNC2H1Q8NCM8 4307 aaKnown RBP2.06□□□□□ -2.08
SF3B1-212ENST00000496458 HMCN1Q96RW7 5635 aa2.06□□□□□ -2.08
SF3B1-212ENST00000496458 IGKV3OR2-268A0A0C4DH90 116 aa2.06□□□□□ -2.08
SF3B1-212ENST00000496458 ANGP03950 147 aaKnown RBP2.06□□□□□ -2.08
SF3B1-212ENST00000496458 Q6ZRN7 208 aaPredicted RBP2.06□□□□□ -2.08
SF3B1-212ENST00000496458 KRTAP4-1Q9BYQ7 146 aa2.06□□□□□ -2.08
SF3B1-212ENST00000496458 LINC00472Q9H8W2 130 aa2.06□□□□□ -2.08
SF3B1-212ENST00000496458 DEFB4AO15263 64 aa2.05□□□□□ -2.08
SF3B1-212ENST00000496458 SPINK13Q1W4C9 94 aa2.05□□□□□ -2.08
SF3B1-212ENST00000496458 WFDC13Q8IUB5 93 aa2.05□□□□□ -2.08
SF3B1-212ENST00000496458 SACSQ9NZJ4 4579 aa2.05□□□□□ -2.08
SF3B1-212ENST00000496458 LYSTQ99698 3801 aa2.04□□□□□ -2.08
SF3B1-212ENST00000496458 DNAH1Q9P2D7 4330 aa2.04□□□□□ -2.08
SF3B1-212ENST00000496458 INE1O15225 51 aa2.04□□□□□ -2.08
SF3B1-212ENST00000496458 HTN1P15515 57 aa2.04□□□□□ -2.08
SF3B1-212ENST00000496458 VPS13DQ5THJ4 4388 aa2.04□□□□□ -2.08
SF3B1-212ENST00000496458 WFDC10BQ8IUB3 73 aa2.04□□□□□ -2.08
SF3B1-212ENST00000496458 RYR3Q15413 4870 aa2.04□□□□□ -2.08
SF3B1-212ENST00000496458 RYR2Q92736 4967 aa2.02□□□□□ -2.09
SF3B1-212ENST00000496458 KMT2AQ03164 3969 aa2.02□□□□□ -2.09
SF3B1-212ENST00000496458 A0A087WTM6 91 aa2.02□□□□□ -2.09
SF3B1-212ENST00000496458 SPART-AS1P0CW21 52 aa2.02□□□□□ -2.09
SF3B1-212ENST00000496458 HTN3P15516 51 aa2.02□□□□□ -2.09
SF3B1-212ENST00000496458 PCOTHQ58A44 107 aa2.02□□□□□ -2.09
SF3B1-212ENST00000496458 C6orf48Q9UBA6 75 aa2.02□□□□□ -2.09
SF3B1-212ENST00000496458 ALMS1Q8TCU4 4167 aa2.02□□□□□ -2.09
SF3B1-212ENST00000496458 HYDINQ4G0P3 5121 aa2.01□□□□□ -2.09
SF3B1-212ENST00000496458 DNAH10Q8IVF4 4471 aa2.01□□□□□ -2.09
SF3B1-212ENST00000496458 MMP24-AS1A0A0U1RRL7 71 aa2.01□□□□□ -2.09
SF3B1-212ENST00000496458 DEFB130BP0DP73 79 aa2.01□□□□□ -2.09
SF3B1-212ENST00000496458 DEFB130AP0DP74 79 aa2.01□□□□□ -2.09
SF3B1-212ENST00000496458 NOP10Q9NPE3 64 aaKnown RBP2.01□□□□□ -2.09
SF3B1-212ENST00000496458 SRRM2Q9UQ35 2752 aaKnown RBP2.01□□□□□ -2.09
SF3B1-212ENST00000496458 LY6G6CO95867 125 aa2□□□□□ -2.09
SF3B1-212ENST00000496458 UNQ6190/PRO20217Q6UXQ8 127 aa2□□□□□ -2.09
SF3B1-212ENST00000496458 FRAS1Q86XX4 4008 aa2□□□□□ -2.09
SF3B1-212ENST00000496458 DNAH6Q9C0G6 4158 aa1.99□□□□□ -2.09
SF3B1-212ENST00000496458 SPRR1AP35321 89 aa1.99□□□□□ -2.09
SF3B1-212ENST00000496458 RPL37AP61513 92 aaKnown RBP1.99□□□□□ -2.09
SF3B1-212ENST00000496458 CLPSL2Q6UWE3 100 aa1.99□□□□□ -2.09
SF3B1-212ENST00000496458 Q6ZRX8 168 aa1.99□□□□□ -2.09
SF3B1-212ENST00000496458 APLNQ9ULZ1 77 aa1.99□□□□□ -2.09
SF3B1-212ENST00000496458 DNAH17Q9UFH2 4485 aa1.99□□□□□ -2.09
SF3B1-212ENST00000496458 DNAH2Q9P225 4427 aa1.99□□□□□ -2.09
SF3B1-212ENST00000496458 NBDYA0A0U1RRE5 68 aa1.98□□□□□ -2.09
SF3B1-212ENST00000496458 DEFB105AQ8NG35 78 aa1.98□□□□□ -2.09
SF3B1-212ENST00000496458 Q96NJ1 140 aa1.98□□□□□ -2.09
SF3B1-212ENST00000496458 UBE2DNLQ8IWF7 75 aa1.97□□□□□ -2.09
SF3B1-212ENST00000496458 EPPK1P58107 5090 aaKnown RBP1.97□□□□□ -2.09
SF3B1-212ENST00000496458 PKHD1P08F94 4074 aa1.96□□□□□ -2.09
SF3B1-212ENST00000496458 A0A096LPF7 62 aa1.96□□□□□ -2.1
SF3B1-212ENST00000496458 KRTAP12-1P59990 96 aa1.96□□□□□ -2.1
SF3B1-212ENST00000496458 PRO0255Q9UI72 69 aa1.96□□□□□ -2.1
SF3B1-212ENST00000496458 DNAH11Q96DT5 4516 aa1.96□□□□□ -2.1
SF3B1-212ENST00000496458 HECTD4Q9Y4D8 3996 aa1.95□□□□□ -2.1
SF3B1-212ENST00000496458 SSBP3-AS1Q7Z2R9 100 aa1.95□□□□□ -2.1
SF3B1-212ENST00000496458 MRPL34Q9BQ48 92 aaKnown RBP1.95□□□□□ -2.1
SF3B1-212ENST00000496458 PKD1P98161 4303 aa1.95□□□□□ -2.1
SF3B1-212ENST00000496458 FAT2Q9NYQ8 4349 aa1.95□□□□□ -2.1
SF3B1-212ENST00000496458 H3BNG1 76 aa1.94□□□□□ -2.1
SF3B1-212ENST00000496458 SPRR1BP22528 89 aa1.94□□□□□ -2.1
SF3B1-212ENST00000496458 BIRC6Q9NR09 4857 aa1.93□□□□□ -2.1
SF3B1-212ENST00000496458 KIAA1109Q2LD37 5005 aa1.93□□□□□ -2.1
SF3B1-212ENST00000496458 FLG2Q5D862 2391 aaPredicted RBP1.93□□□□□ -2.1
SF3B1-212ENST00000496458 DYNC1H1Q14204 4646 aaKnown RBP1.93□□□□□ -2.1
SF3B1-212ENST00000496458 COX6B2Q6YFQ2 88 aa1.92□□□□□ -2.1
SF3B1-212ENST00000496458 RYR1P21817 5038 aa1.92□□□□□ -2.1
SF3B1-212ENST00000496458 DNAH5Q8TE73 4624 aa1.91□□□□□ -2.1
SF3B1-212ENST00000496458 H0YAA0 97 aa1.91□□□□□ -2.1
SF3B1-212ENST00000496458 LELP1Q5T871 98 aa1.91□□□□□ -2.1
SF3B1-212ENST00000496458 Q6ZSA8 131 aa1.91□□□□□ -2.1
SF3B1-212ENST00000496458 LRP1BQ9NZR2 4599 aa1.91□□□□□ -2.1
SF3B1-212ENST00000496458 DMBT1Q9UGM3 2413 aaPredicted RBP1.9□□□□□ -2.1
SF3B1-212ENST00000496458 FCGBPQ9Y6R7 5405 aaPredicted RBP1.9□□□□□ -2.11
SF3B1-212ENST00000496458 LINC01556Q5JQF7 62 aa1.9□□□□□ -2.11
SF3B1-212ENST00000496458 APOBP04114 4563 aaKnown RBP1.9□□□□□ -2.11
SF3B1-212ENST00000496458 FAT1Q14517 4588 aa1.88□□□□□ -2.11
SF3B1-212ENST00000496458 H1FX-AS1Q4G0G2 97 aa1.88□□□□□ -2.11
SF3B1-212ENST00000496458 CRIPTQ9P021 101 aa1.88□□□□□ -2.11
SF3B1-212ENST00000496458 HERC2O95714 4834 aa1.88□□□□□ -2.11
SF3B1-212ENST00000496458 HSPG2P98160 4391 aa1.87□□□□□ -2.11
SF3B1-212ENST00000496458 DNAH8Q96JB1 4490 aa1.87□□□□□ -2.11
SF3B1-212ENST00000496458 ABCA13Q86UQ4 5058 aa1.86□□□□□ -2.11
SF3B1-212ENST00000496458 PCLOQ9Y6V0 5065 aa1.85□□□□□ -2.11
SF3B1-212ENST00000496458 VPS13BQ7Z7G8 4022 aa1.84□□□□□ -2.11
SF3B1-212ENST00000496458 RPL37P61927 97 aaKnown RBP1.84□□□□□ -2.11
SF3B1-212ENST00000496458 PLAC4Q8WY50 150 aa1.84□□□□□ -2.11
SF3B1-212ENST00000496458 MYCBP2O75592 4640 aa1.83□□□□□ -2.12
SF3B1-212ENST00000496458 SMR3BP02814 79 aaPredicted RBP1.82□□□□□ -2.12
SF3B1-212ENST00000496458 HERC1Q15751 4861 aa1.81□□□□□ -2.12
SF3B1-212ENST00000496458 LRP1Q07954 4544 aaKnown RBP1.81□□□□□ -2.12
SF3B1-212ENST00000496458 A0A096LNI7 61 aa1.79□□□□□ -2.12
Retrieved 100 of 20,778 RNA–protein pairs in 7.1 ms