RNA–Protein interactions for RNA: ENST00000493660.5

SMARCE1-211, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1, humanhuman

TSL 3

Gene SMARCE1, Length 2,284 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCE1-211ENST00000493660 IGLV9-49A0A0B4J1Y8 123 aa4.21□□□□□ -1.73
SMARCE1-211ENST00000493660 SSBP3-AS1Q7Z2R9 100 aa4.21□□□□□ -1.73
SMARCE1-211ENST00000493660 LINC00472Q9H8W2 130 aa4.21□□□□□ -1.74
SMARCE1-211ENST00000493660 Q5VSD8 79 aa4.2□□□□□ -1.74
SMARCE1-211ENST00000493660 ANAPC11Q9NYG5 84 aa4.2□□□□□ -1.74
SMARCE1-211ENST00000493660 HSPG2P98160 4391 aa4.2□□□□□ -1.74
SMARCE1-211ENST00000493660 Q8N1X5 172 aa4.19□□□□□ -1.74
SMARCE1-211ENST00000493660 RYR1P21817 5038 aa4.18□□□□□ -1.74
SMARCE1-211ENST00000493660 PCLOQ9Y6V0 5065 aa4.18□□□□□ -1.74
SMARCE1-211ENST00000493660 A8MUU9 505 aa4.18□□□□□ -1.74
SMARCE1-211ENST00000493660 KRTAP13-2Q52LG2 175 aa4.18□□□□□ -1.74
SMARCE1-211ENST00000493660 DMAC1Q96GE9 116 aa4.18□□□□□ -1.74
SMARCE1-211ENST00000493660 FAT1Q14517 4588 aa4.17□□□□□ -1.74
SMARCE1-211ENST00000493660 SRRM2Q9UQ35 2752 aaKnown RBP4.16□□□□□ -1.74
SMARCE1-211ENST00000493660 A0A0G2JQZ4 141 aa4.16□□□□□ -1.74
SMARCE1-211ENST00000493660 TYMSOSQ8TAI1 123 aa4.15□□□□□ -1.74
SMARCE1-211ENST00000493660 EPPK1P58107 5090 aaKnown RBP4.15□□□□□ -1.74
SMARCE1-211ENST00000493660 C20orf166-AS1Q96NR2 134 aa4.15□□□□□ -1.75
SMARCE1-211ENST00000493660 BIRC6Q9NR09 4857 aa4.15□□□□□ -1.75
SMARCE1-211ENST00000493660 C8orf17Q9NRJ1 99 aa4.14□□□□□ -1.75
SMARCE1-211ENST00000493660 RPS29P62273 56 aaKnown RBP4.13□□□□□ -1.75
SMARCE1-211ENST00000493660 SPINK1P00995 79 aa4.11□□□□□ -1.75
SMARCE1-211ENST00000493660 LINC00304Q8N9R0 145 aa4.11□□□□□ -1.75
SMARCE1-211ENST00000493660 MRPL34Q9BQ48 92 aaKnown RBP4.11□□□□□ -1.75
SMARCE1-211ENST00000493660 KIAA1109Q2LD37 5005 aa4.11□□□□□ -1.75
SMARCE1-211ENST00000493660 NDUFAF8A1L188 74 aa4.1□□□□□ -1.75
SMARCE1-211ENST00000493660 KRTAP10-8P60410 259 aa4.09□□□□□ -1.75
SMARCE1-211ENST00000493660 Q96NJ1 140 aa4.09□□□□□ -1.75
SMARCE1-211ENST00000493660 K7ERS5 55 aa4.07□□□□□ -1.76
SMARCE1-211ENST00000493660 Q5W150 140 aa4.07□□□□□ -1.76
SMARCE1-211ENST00000493660 A0A1B0GVX0 72 aa4.07□□□□□ -1.76
SMARCE1-211ENST00000493660 SEC61BP60468 96 aaKnown RBP4.07□□□□□ -1.76
SMARCE1-211ENST00000493660 KRTAP13-3Q3SY46 172 aa4.07□□□□□ -1.76
SMARCE1-211ENST00000493660 SPINT4Q6UDR6 99 aa4.07□□□□□ -1.76
SMARCE1-211ENST00000493660 FAT3Q8TDW7 4589 aa4.06□□□□□ -1.76
SMARCE1-211ENST00000493660 LUZP6Q538Z0 58 aa4.06□□□□□ -1.76
SMARCE1-211ENST00000493660 KRTAP15-1Q3LI76 137 aa4.05□□□□□ -1.76
SMARCE1-211ENST00000493660 TNXBP22105 4242 aa4.04□□□□□ -1.76
SMARCE1-211ENST00000493660 MT1HL1P0DM35 61 aa4.04□□□□□ -1.76
SMARCE1-211ENST00000493660 HERC2O95714 4834 aa4.02□□□□□ -1.77
SMARCE1-211ENST00000493660 LRP1Q07954 4544 aaKnown RBP4□□□□□ -1.77
SMARCE1-211ENST00000493660 H0YAA0 97 aa3.99□□□□□ -1.77
SMARCE1-211ENST00000493660 FLG2Q5D862 2391 aaPredicted RBP3.99□□□□□ -1.77
SMARCE1-211ENST00000493660 UBR4Q5T4S7 5183 aa3.98□□□□□ -1.77
SMARCE1-211ENST00000493660 IGKV2-30P06310 120 aa3.96□□□□□ -1.78
SMARCE1-211ENST00000493660 CRIPTQ9P021 101 aa3.94□□□□□ -1.78
SMARCE1-211ENST00000493660 MYCBP2O75592 4640 aa3.94□□□□□ -1.78
SMARCE1-211ENST00000493660 IGKV2D-30A0A075B6S6 120 aa3.92□□□□□ -1.78
SMARCE1-211ENST00000493660 ABCA13Q86UQ4 5058 aa3.92□□□□□ -1.78
SMARCE1-211ENST00000493660 A0A1B0GU33 70 aa3.91□□□□□ -1.78
SMARCE1-211ENST00000493660 H1FX-AS1Q4G0G2 97 aa3.9□□□□□ -1.79
SMARCE1-211ENST00000493660 LCE5AQ5TCM9 118 aa3.9□□□□□ -1.79
SMARCE1-211ENST00000493660 DMBT1Q9UGM3 2413 aaPredicted RBP3.89□□□□□ -1.79
SMARCE1-211ENST00000493660 TPRXLQ17RH7 258 aa3.88□□□□□ -1.79
SMARCE1-211ENST00000493660 C9orf92A6NGG3 77 aa3.88□□□□□ -1.79
SMARCE1-211ENST00000493660 RPL37P61927 97 aaKnown RBP3.83□□□□□ -1.8
SMARCE1-211ENST00000493660 LCE4AQ5TA78 99 aa3.79□□□□□ -1.8
SMARCE1-211ENST00000493660 COX6B2Q6YFQ2 88 aa3.78□□□□□ -1.8
SMARCE1-211ENST00000493660 CAMK2N1Q7Z7J9 78 aa3.76□□□□□ -1.81
SMARCE1-211ENST00000493660 C10orf95Q9H7T3 257 aa3.75□□□□□ -1.81
SMARCE1-211ENST00000493660 MUC17Q685J3 4493 aa3.73□□□□□ -1.81
SMARCE1-211ENST00000493660 LPAP08519 4548 aa3.71□□□□□ -1.82
SMARCE1-211ENST00000493660 LRP2P98164 4655 aa3.68□□□□□ -1.82
SMARCE1-211ENST00000493660 HMCN2Q8NDA2 5059 aa3.68□□□□□ -1.82
SMARCE1-211ENST00000493660 HERC1Q15751 4861 aa3.67□□□□□ -1.82
SMARCE1-211ENST00000493660 KRTAP19-4Q3LI73 84 aa3.66□□□□□ -1.82
SMARCE1-211ENST00000493660 KRTAP9-7A8MTY7 169 aa3.63□□□□□ -1.83
SMARCE1-211ENST00000493660 PLAC4Q8WY50 150 aa3.61□□□□□ -1.83
SMARCE1-211ENST00000493660 KRTAP4-1Q9BYQ7 146 aa3.61□□□□□ -1.83
SMARCE1-211ENST00000493660 S4R3F8 94 aa3.6□□□□□ -1.83
SMARCE1-211ENST00000493660 KRTAP3-1Q9BYR8 98 aa3.59□□□□□ -1.83
SMARCE1-211ENST00000493660 KRTAP9-3Q9BYQ3 159 aa3.58□□□□□ -1.84
SMARCE1-211ENST00000493660 A0A0D9SG42 100 aa3.58□□□□□ -1.84
SMARCE1-211ENST00000493660 KRTAP13-4Q3LI77 160 aa3.56□□□□□ -1.84
SMARCE1-211ENST00000493660 PRO2289Q9P1D8 64 aa3.55□□□□□ -1.84
SMARCE1-211ENST00000493660 KRTAP10-6P60371 365 aaPredicted RBP3.55□□□□□ -1.84
SMARCE1-211ENST00000493660 KRTAP19-2Q3LHN2 52 aa3.53□□□□□ -1.84
SMARCE1-211ENST00000493660 MUC2Q02817 5179 aa3.5□□□□□ -1.85
SMARCE1-211ENST00000493660 KRTAP12-2P59991 146 aa3.5□□□□□ -1.85
SMARCE1-211ENST00000493660 KRTAP12-1P59990 96 aa3.47□□□□□ -1.85
SMARCE1-211ENST00000493660 RNF213Q63HN8 5207 aa3.47□□□□□ -1.85
SMARCE1-211ENST00000493660 CRCT1Q9UGL9 99 aa3.46□□□□□ -1.85
SMARCE1-211ENST00000493660 FLGP20930 4061 aaPredicted RBP3.43□□□□□ -1.86
SMARCE1-211ENST00000493660 INE1O15225 51 aa3.4□□□□□ -1.86
SMARCE1-211ENST00000493660 MT1HP80294 61 aa3.4□□□□□ -1.87
SMARCE1-211ENST00000493660 R4GN34 69 aa3.38□□□□□ -1.87
SMARCE1-211ENST00000493660 PP632Q6XCG6 107 aa3.37□□□□□ -1.87
SMARCE1-211ENST00000493660 M0QZ58 72 aa3.36□□□□□ -1.87
SMARCE1-211ENST00000493660 FAT4Q6V0I7 4981 aa3.35□□□□□ -1.87
SMARCE1-211ENST00000493660 M0R2T5 61 aa3.35□□□□□ -1.87
SMARCE1-211ENST00000493660 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.34□□□□□ -1.87
SMARCE1-211ENST00000493660 SPRR5A0A1B0GTR4 108 aa3.31□□□□□ -1.88
SMARCE1-211ENST00000493660 MT2AP02795 61 aa3.25□□□□□ -1.89
SMARCE1-211ENST00000493660 KRTAP23-1A1A580 65 aa3.24□□□□□ -1.89
SMARCE1-211ENST00000493660 MT1FP04733 61 aa3.22□□□□□ -1.89
SMARCE1-211ENST00000493660 KRTAP10-10P60014 251 aa3.22□□□□□ -1.89
SMARCE1-211ENST00000493660 SPRR2GQ9BYE4 73 aa3.19□□□□□ -1.9
SMARCE1-211ENST00000493660 GPR98Q8WXG9 6306 aa3.19□□□□□ -1.9
SMARCE1-211ENST00000493660 KRTAP19-8Q3LI54 63 aa3.12□□□□□ -1.91
SMARCE1-211ENST00000493660 SSPOA2VEC9 5147 aa3.08□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms