RNA–Protein interactions for RNA: ENST00000493455.6

HPS4-216, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 3

Gene HPS4, Length 986 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-216ENST00000493455 DMAC1Q96GE9 116 aa7.59□□□□□ -1.19
HPS4-216ENST00000493455 CCDC179H3BU77 68 aa7.58□□□□□ -1.2
HPS4-216ENST00000493455 CYSTM1Q9H1C7 97 aa7.57□□□□□ -1.2
HPS4-216ENST00000493455 CSAG1Q6PB30 78 aa7.53□□□□□ -1.2
HPS4-216ENST00000493455 ACYP2P14621 99 aa7.52□□□□□ -1.21
HPS4-216ENST00000493455 SPANXA2-OT1Q8N9U9 137 aa7.52□□□□□ -1.21
HPS4-216ENST00000493455 NDUFC1O43677 76 aa7.51□□□□□ -1.21
HPS4-216ENST00000493455 H7BZZ5 65 aa7.5□□□□□ -1.21
HPS4-216ENST00000493455 KRTAP9-8Q9BYQ0 159 aa7.48□□□□□ -1.21
HPS4-216ENST00000493455 CHKB-CPT1BH3BT56 60 aa7.46□□□□□ -1.22
HPS4-216ENST00000493455 MT2AP02795 61 aa7.46□□□□□ -1.22
HPS4-216ENST00000493455 KRTAP10-10P60014 251 aa7.43□□□□□ -1.22
HPS4-216ENST00000493455 MT1FP04733 61 aa7.41□□□□□ -1.22
HPS4-216ENST00000493455 COA5Q86WW8 74 aa7.36□□□□□ -1.23
HPS4-216ENST00000493455 SPTSSBQ8NFR3 76 aa7.35□□□□□ -1.23
HPS4-216ENST00000493455 ADM2Q7Z4H4 148 aa7.29□□□□□ -1.24
HPS4-216ENST00000493455 ATP5EP56381 51 aaPredicted RBP7.28□□□□□ -1.24
HPS4-216ENST00000493455 LOC100996750A0A140TA64 210 aa7.27□□□□□ -1.25
HPS4-216ENST00000493455 PCP4P48539 62 aa7.27□□□□□ -1.25
HPS4-216ENST00000493455 TMEM258P61165 79 aa7.27□□□□□ -1.25
HPS4-216ENST00000493455 KRTAP9-2Q9BYQ4 174 aa7.27□□□□□ -1.25
HPS4-216ENST00000493455 KRTAP4-6Q9BYQ5 205 aa7.27□□□□□ -1.25
HPS4-216ENST00000493455 H0YAA0 97 aa7.23□□□□□ -1.25
HPS4-216ENST00000493455 KRTAP9-3Q9BYQ3 159 aa7.23□□□□□ -1.25
HPS4-216ENST00000493455 P0C880 135 aa7.17□□□□□ -1.26
HPS4-216ENST00000493455 CRIPTQ9P021 101 aa7.1□□□□□ -1.27
HPS4-216ENST00000493455 KRTAP19-1Q8IUB9 90 aa7.08□□□□□ -1.28
HPS4-216ENST00000493455 SEC61GP60059 68 aa7.07□□□□□ -1.28
HPS4-216ENST00000493455 R4GN34 69 aa7.06□□□□□ -1.28
HPS4-216ENST00000493455 M0QZ58 72 aa7.05□□□□□ -1.28
HPS4-216ENST00000493455 SERP1Q9Y6X1 66 aa7.05□□□□□ -1.28
HPS4-216ENST00000493455 SPRR2GQ9BYE4 73 aa7.04□□□□□ -1.28
HPS4-216ENST00000493455 USH2AO75445 5202 aa7.02□□□□□ -1.29
HPS4-216ENST00000493455 A0A1B0GU69 56 aa6.99□□□□□ -1.29
HPS4-216ENST00000493455 LINC01554Q52M75 96 aa6.98□□□□□ -1.29
HPS4-216ENST00000493455 FSIP2Q5CZC0 6907 aa6.96□□□□□ -1.29
HPS4-216ENST00000493455 Q5VV11 94 aa6.96□□□□□ -1.3
HPS4-216ENST00000493455 CRCT1Q9UGL9 99 aa6.94□□□□□ -1.3
HPS4-216ENST00000493455 KRTAP19-8Q3LI54 63 aa6.92□□□□□ -1.3
HPS4-216ENST00000493455 MT1BP07438 61 aa6.9□□□□□ -1.3
HPS4-216ENST00000493455 PRR15LQ9BU68 103 aa6.9□□□□□ -1.3
HPS4-216ENST00000493455 LINC01558Q9Y6Z2 57 aa6.9□□□□□ -1.3
HPS4-216ENST00000493455 KRTAP9-6A0A140TA67 174 aa6.88□□□□□ -1.31
HPS4-216ENST00000493455 A0A1B0GU33 70 aa6.88□□□□□ -1.31
HPS4-216ENST00000493455 KRTAP13-4Q3LI77 160 aa6.88□□□□□ -1.31
HPS4-216ENST00000493455 SSPOA2VEC9 5147 aa6.87□□□□□ -1.31
HPS4-216ENST00000493455 SPATA8Q6RVD6 105 aa6.84□□□□□ -1.31
HPS4-216ENST00000493455 PLAC4Q8WY50 150 aa6.82□□□□□ -1.32
HPS4-216ENST00000493455 SMIM26A0A096LP01 95 aa6.8□□□□□ -1.32
HPS4-216ENST00000493455 A0A0D9SG42 100 aa6.8□□□□□ -1.32
HPS4-216ENST00000493455 V9GYY9 64 aa6.78□□□□□ -1.32
HPS4-216ENST00000493455 RPS28P62857 69 aaKnown RBP6.77□□□□□ -1.33
HPS4-216ENST00000493455 KRTAP19-6Q3LI70 58 aa6.76□□□□□ -1.33
HPS4-216ENST00000493455 PSPHP1O15172 72 aa6.75□□□□□ -1.33
HPS4-216ENST00000493455 Q1T7F1 81 aa6.74□□□□□ -1.33
HPS4-216ENST00000493455 A6NN06 94 aa6.7□□□□□ -1.34
HPS4-216ENST00000493455 A8MU10 97 aa6.68□□□□□ -1.34
HPS4-216ENST00000493455 SPINT4Q6UDR6 99 aa6.67□□□□□ -1.34
HPS4-216ENST00000493455 UQCR11O14957 56 aa6.66□□□□□ -1.34
HPS4-216ENST00000493455 KRTAP10-5P60370 271 aa6.64□□□□□ -1.35
HPS4-216ENST00000493455 FCGBPQ9Y6R7 5405 aaPredicted RBP6.62□□□□□ -1.35
HPS4-216ENST00000493455 CAMK2N1Q7Z7J9 78 aa6.6□□□□□ -1.35
HPS4-216ENST00000493455 KRTAP4-8Q9BYQ9 185 aa6.6□□□□□ -1.35
HPS4-216ENST00000493455 MT1XP80297 61 aa6.58□□□□□ -1.36
HPS4-216ENST00000493455 MIR22HGQ0VDD5 57 aa6.58□□□□□ -1.36
HPS4-216ENST00000493455 PRO2289Q9P1D8 64 aa6.58□□□□□ -1.36
HPS4-216ENST00000493455 KRTAP12-1P59990 96 aa6.57□□□□□ -1.36
HPS4-216ENST00000493455 KRTAP12-2P59991 146 aa6.56□□□□□ -1.36
HPS4-216ENST00000493455 A6NED7 52 aa6.54□□□□□ -1.36
HPS4-216ENST00000493455 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.49□□□□□ -1.37
HPS4-216ENST00000493455 K7ERS5 55 aa6.37□□□□□ -1.39
HPS4-216ENST00000493455 KRTAP10-7P60409 375 aaPredicted RBP6.33□□□□□ -1.4
HPS4-216ENST00000493455 MACF1Q9UPN3 7388 aaKnown RBP6.31□□□□□ -1.4
HPS4-216ENST00000493455 CDC42SE1Q9NRR8 79 aa6.3□□□□□ -1.4
HPS4-216ENST00000493455 LCE3BQ5TA77 95 aa6.27□□□□□ -1.41
HPS4-216ENST00000493455 C10orf95Q9H7T3 257 aa6.26□□□□□ -1.41
HPS4-216ENST00000493455 KRTAP9-7A8MTY7 169 aa6.24□□□□□ -1.41
HPS4-216ENST00000493455 KRTAP4-12Q9BQ66 201 aa6.24□□□□□ -1.41
HPS4-216ENST00000493455 KRTAP10-12P60413 245 aa6.22□□□□□ -1.41
HPS4-216ENST00000493455 KRTAP4-8A0A0G2JLE6 195 aa6.2□□□□□ -1.42
HPS4-216ENST00000493455 SYNE2Q8WXH0 6885 aaKnown RBP6.18□□□□□ -1.42
HPS4-216ENST00000493455 KRTAP8-1Q8IUC2 63 aa6.16□□□□□ -1.42
HPS4-216ENST00000493455 BRK1Q8WUW1 75 aa6.16□□□□□ -1.42
HPS4-216ENST00000493455 KRTAP9-9Q9BYP9 154 aa6.16□□□□□ -1.42
HPS4-216ENST00000493455 KRTAP9-4Q9BYQ2 154 aa6.16□□□□□ -1.42
HPS4-216ENST00000493455 TNP1P09430 55 aa6.15□□□□□ -1.42
HPS4-216ENST00000493455 KMT2DO14686 5537 aa6.15□□□□□ -1.43
HPS4-216ENST00000493455 KRTAP6-3Q3LI67 103 aa6.13□□□□□ -1.43
HPS4-216ENST00000493455 SPRR2FQ96RM1 72 aa6.05□□□□□ -1.44
HPS4-216ENST00000493455 KRTAP5-9P26371 169 aa6.01□□□□□ -1.45
HPS4-216ENST00000493455 ROMO1P60602 79 aa6.01□□□□□ -1.45
HPS4-216ENST00000493455 KRTAP25-1Q3LHN0 102 aa6□□□□□ -1.45
HPS4-216ENST00000493455 LCE3AQ5TA76 89 aa5.99□□□□□ -1.45
HPS4-216ENST00000493455 KRTAP19-5Q3LI72 72 aa5.89□□□□□ -1.47
HPS4-216ENST00000493455 KRTAP4-7Q9BYR0 210 aa5.89□□□□□ -1.47
HPS4-216ENST00000493455 SPRR2EP22531 72 aa5.86□□□□□ -1.47
HPS4-216ENST00000493455 SPRR2BP35325 72 aa5.86□□□□□ -1.47
HPS4-216ENST00000493455 SPRR2AP35326 72 aa5.86□□□□□ -1.47
HPS4-216ENST00000493455 KRTAP19-7Q3SYF9 63 aa5.86□□□□□ -1.47
HPS4-216ENST00000493455 LCE1DQ5T752 114 aa5.86□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 59.4 ms