RNA–Protein interactions for RNA: ENST00000483956.1

SEC61A1-205, Transcript of Sec61 translocon alpha 1 subunit, humanhuman

TSL 1 (best)

Gene SEC61A1, Length 3,046 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEC61A1-205ENST00000483956 SACSQ9NZJ4 4579 aa6.16□□□□□ -1.42
SEC61A1-205ENST00000483956 RPL37P61927 97 aaKnown RBP6.14□□□□□ -1.43
SEC61A1-205ENST00000483956 A0A0D9SG42 100 aa6.12□□□□□ -1.43
SEC61A1-205ENST00000483956 PKHD1L1Q86WI1 4243 aa6.09□□□□□ -1.44
SEC61A1-205ENST00000483956 PKHD1P08F94 4074 aa6.08□□□□□ -1.44
SEC61A1-205ENST00000483956 C9orf92A6NGG3 77 aa6.07□□□□□ -1.44
SEC61A1-205ENST00000483956 KRTAP13-4Q3LI77 160 aa6.07□□□□□ -1.44
SEC61A1-205ENST00000483956 LUZP6Q538Z0 58 aa6.04□□□□□ -1.44
SEC61A1-205ENST00000483956 RYR2Q92736 4967 aa6.02□□□□□ -1.45
SEC61A1-205ENST00000483956 APOBP04114 4563 aaKnown RBP6.01□□□□□ -1.45
SEC61A1-205ENST00000483956 KRTAP10-6P60371 365 aaPredicted RBP6□□□□□ -1.45
SEC61A1-205ENST00000483956 KRTAP10-4P60372 401 aaPredicted RBP5.98□□□□□ -1.45
SEC61A1-205ENST00000483956 SMR3BP02814 79 aaPredicted RBP5.96□□□□□ -1.45
SEC61A1-205ENST00000483956 DYNC1H1Q14204 4646 aaKnown RBP5.95□□□□□ -1.46
SEC61A1-205ENST00000483956 HERC2O95714 4834 aa5.95□□□□□ -1.46
SEC61A1-205ENST00000483956 S4R3F8 94 aa5.94□□□□□ -1.46
SEC61A1-205ENST00000483956 EPPK1P58107 5090 aaKnown RBP5.94□□□□□ -1.46
SEC61A1-205ENST00000483956 FAT1Q14517 4588 aa5.92□□□□□ -1.46
SEC61A1-205ENST00000483956 KRTAP12-2P59991 146 aa5.91□□□□□ -1.46
SEC61A1-205ENST00000483956 KRTAP3-2Q9BYR7 98 aa5.9□□□□□ -1.46
SEC61A1-205ENST00000483956 A0A1B0GVY2 172 aa5.89□□□□□ -1.47
SEC61A1-205ENST00000483956 KRTAP3-3Q9BYR6 98 aa5.86□□□□□ -1.47
SEC61A1-205ENST00000483956 XP32Q5T750 250 aa5.85□□□□□ -1.47
SEC61A1-205ENST00000483956 FAT3Q8TDW7 4589 aa5.81□□□□□ -1.48
SEC61A1-205ENST00000483956 KIAA1109Q2LD37 5005 aa5.81□□□□□ -1.48
SEC61A1-205ENST00000483956 KRTAP12-1P59990 96 aa5.8□□□□□ -1.48
SEC61A1-205ENST00000483956 TNXBP22105 4242 aa5.8□□□□□ -1.48
SEC61A1-205ENST00000483956 PCLOQ9Y6V0 5065 aa5.76□□□□□ -1.49
SEC61A1-205ENST00000483956 KRTAP10-8P60410 259 aa5.75□□□□□ -1.49
SEC61A1-205ENST00000483956 LRP1Q07954 4544 aaKnown RBP5.75□□□□□ -1.49
SEC61A1-205ENST00000483956 PLAC4Q8WY50 150 aa5.73□□□□□ -1.49
SEC61A1-205ENST00000483956 HSPG2P98160 4391 aa5.73□□□□□ -1.49
SEC61A1-205ENST00000483956 MYCBP2O75592 4640 aa5.7□□□□□ -1.5
SEC61A1-205ENST00000483956 Q5VSD8 79 aa5.61□□□□□ -1.51
SEC61A1-205ENST00000483956 RYR1P21817 5038 aa5.6□□□□□ -1.51
SEC61A1-205ENST00000483956 SEC61BP60468 96 aaKnown RBP5.58□□□□□ -1.52
SEC61A1-205ENST00000483956 M0QZ58 72 aa5.57□□□□□ -1.52
SEC61A1-205ENST00000483956 KRTAP4-5Q9BYR2 181 aa5.55□□□□□ -1.52
SEC61A1-205ENST00000483956 MT1HL1P0DM35 61 aa5.52□□□□□ -1.53
SEC61A1-205ENST00000483956 ABCA13Q86UQ4 5058 aa5.47□□□□□ -1.53
SEC61A1-205ENST00000483956 LPAP08519 4548 aa5.44□□□□□ -1.54
SEC61A1-205ENST00000483956 LRP2P98164 4655 aa5.41□□□□□ -1.54
SEC61A1-205ENST00000483956 R4GN34 69 aa5.35□□□□□ -1.55
SEC61A1-205ENST00000483956 HERC1Q15751 4861 aa5.34□□□□□ -1.55
SEC61A1-205ENST00000483956 PP632Q6XCG6 107 aa5.3□□□□□ -1.56
SEC61A1-205ENST00000483956 J3QL48 77 aa5.29□□□□□ -1.56
SEC61A1-205ENST00000483956 CAMK2N1Q7Z7J9 78 aa5.27□□□□□ -1.57
SEC61A1-205ENST00000483956 MUC2Q02817 5179 aa5.24□□□□□ -1.57
SEC61A1-205ENST00000483956 LORP23490 312 aaPredicted RBP5.23□□□□□ -1.57
SEC61A1-205ENST00000483956 PRO2289Q9P1D8 64 aa5.23□□□□□ -1.57
SEC61A1-205ENST00000483956 MUC17Q685J3 4493 aa5.23□□□□□ -1.57
SEC61A1-205ENST00000483956 SPRR5A0A1B0GTR4 108 aa5.2□□□□□ -1.58
SEC61A1-205ENST00000483956 KRTAP4-1Q9BYQ7 146 aa5.15□□□□□ -1.58
SEC61A1-205ENST00000483956 KRTAP19-2Q3LHN2 52 aa5.14□□□□□ -1.59
SEC61A1-205ENST00000483956 RNF213Q63HN8 5207 aa5.13□□□□□ -1.59
SEC61A1-205ENST00000483956 UBR4Q5T4S7 5183 aa5.09□□□□□ -1.59
SEC61A1-205ENST00000483956 KRTAP9-6A0A140TA67 174 aa5.07□□□□□ -1.6
SEC61A1-205ENST00000483956 HMCN2Q8NDA2 5059 aa5.07□□□□□ -1.6
SEC61A1-205ENST00000483956 FLGP20930 4061 aaPredicted RBP5.03□□□□□ -1.6
SEC61A1-205ENST00000483956 KRTAP9-2Q9BYQ4 174 aa5.01□□□□□ -1.61
SEC61A1-205ENST00000483956 INE1O15225 51 aa5.01□□□□□ -1.61
SEC61A1-205ENST00000483956 KRTAP23-1A1A580 65 aa4.99□□□□□ -1.61
SEC61A1-205ENST00000483956 FAT4Q6V0I7 4981 aa4.99□□□□□ -1.61
SEC61A1-205ENST00000483956 TNP1P09430 55 aa4.99□□□□□ -1.61
SEC61A1-205ENST00000483956 LCE2DQ5TA82 110 aaPredicted RBP4.8□□□□□ -1.64
SEC61A1-205ENST00000483956 SPRR2GQ9BYE4 73 aa4.8□□□□□ -1.64
SEC61A1-205ENST00000483956 LCE2AQ5TA79 106 aaPredicted RBP4.74□□□□□ -1.65
SEC61A1-205ENST00000483956 LCE2CQ5TA81 110 aa4.74□□□□□ -1.65
SEC61A1-205ENST00000483956 KRTAP19-1Q8IUB9 90 aa4.74□□□□□ -1.65
SEC61A1-205ENST00000483956 LCE3AQ5TA76 89 aa4.71□□□□□ -1.66
SEC61A1-205ENST00000483956 CRCT1Q9UGL9 99 aa4.68□□□□□ -1.66
SEC61A1-205ENST00000483956 M0R2T5 61 aa4.66□□□□□ -1.66
SEC61A1-205ENST00000483956 MT1HP80294 61 aa4.59□□□□□ -1.67
SEC61A1-205ENST00000483956 KRTAP8-1Q8IUC2 63 aa4.59□□□□□ -1.68
SEC61A1-205ENST00000483956 MT2AP02795 61 aa4.56□□□□□ -1.68
SEC61A1-205ENST00000483956 MT1FP04733 61 aa4.56□□□□□ -1.68
SEC61A1-205ENST00000483956 FSIP2Q5CZC0 6907 aa4.56□□□□□ -1.68
SEC61A1-205ENST00000483956 KRTAP19-8Q3LI54 63 aa4.56□□□□□ -1.68
SEC61A1-205ENST00000483956 KRTAP10-10P60014 251 aa4.54□□□□□ -1.68
SEC61A1-205ENST00000483956 KRTAP9-8Q9BYQ0 159 aa4.52□□□□□ -1.69
SEC61A1-205ENST00000483956 KRTAP10-12P60413 245 aa4.49□□□□□ -1.69
SEC61A1-205ENST00000483956 KRTAP10-5P60370 271 aa4.48□□□□□ -1.69
SEC61A1-205ENST00000483956 MT1XP80297 61 aa4.48□□□□□ -1.69
SEC61A1-205ENST00000483956 KRTAP9-7A8MTY7 169 aa4.47□□□□□ -1.69
SEC61A1-205ENST00000483956 MT1BP07438 61 aa4.47□□□□□ -1.69
SEC61A1-205ENST00000483956 USH2AO75445 5202 aa4.46□□□□□ -1.7
SEC61A1-205ENST00000483956 KRTAP12-3P60328 96 aa4.44□□□□□ -1.7
SEC61A1-205ENST00000483956 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.39□□□□□ -1.71
SEC61A1-205ENST00000483956 KRTAP10-7P60409 375 aaPredicted RBP4.34□□□□□ -1.72
SEC61A1-205ENST00000483956 KRTAP9-3Q9BYQ3 159 aa4.32□□□□□ -1.72
SEC61A1-205ENST00000483956 LCE3CQ5T5A8 94 aa4.2□□□□□ -1.74
SEC61A1-205ENST00000483956 KRTAP19-5Q3LI72 72 aa4.19□□□□□ -1.74
SEC61A1-205ENST00000483956 SSPOA2VEC9 5147 aa4.19□□□□□ -1.74
SEC61A1-205ENST00000483956 KRTAP9-6A8MVA2 160 aa4.16□□□□□ -1.74
SEC61A1-205ENST00000483956 KMT2DO14686 5537 aa4.14□□□□□ -1.75
SEC61A1-205ENST00000483956 KRTAP2-3P0C7H8 128 aa4.14□□□□□ -1.75
SEC61A1-205ENST00000483956 KRTAP2-4Q9BYR9 128 aa4.14□□□□□ -1.75
SEC61A1-205ENST00000483956 KRTAP2-1Q9BYU5 128 aa4.14□□□□□ -1.75
SEC61A1-205ENST00000483956 LCE2BO14633 110 aa4.11□□□□□ -1.75
SEC61A1-205ENST00000483956 KRTAP6-3Q3LI67 103 aa4.07□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 98.5 ms