RNA–Protein interactions for RNA: ENST00000483519.5

USP40-214, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 1 (best)

Gene USP40, Length 2,722 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-214ENST00000483519 BIRC6Q9NR09 4857 aa7.08□□□□□ -1.28
USP40-214ENST00000483519 COX6B2Q6YFQ2 88 aa7.07□□□□□ -1.28
USP40-214ENST00000483519 Q5VSD8 79 aa7.04□□□□□ -1.28
USP40-214ENST00000483519 CRIPTQ9P021 101 aa7□□□□□ -1.29
USP40-214ENST00000483519 APOBP04114 4563 aaKnown RBP6.99□□□□□ -1.29
USP40-214ENST00000483519 RYR1P21817 5038 aa6.98□□□□□ -1.29
USP40-214ENST00000483519 KIAA1109Q2LD37 5005 aa6.98□□□□□ -1.29
USP40-214ENST00000483519 RPL37P61927 97 aaKnown RBP6.96□□□□□ -1.29
USP40-214ENST00000483519 KRTAP10-4P60372 401 aaPredicted RBP6.96□□□□□ -1.3
USP40-214ENST00000483519 KRTAP17-1Q9BYP8 105 aa6.94□□□□□ -1.3
USP40-214ENST00000483519 FLG2Q5D862 2391 aaPredicted RBP6.94□□□□□ -1.3
USP40-214ENST00000483519 HSPG2P98160 4391 aa6.94□□□□□ -1.3
USP40-214ENST00000483519 NDUFAF8A1L188 74 aa6.93□□□□□ -1.3
USP40-214ENST00000483519 KRTAP4-5Q9BYR2 181 aa6.91□□□□□ -1.3
USP40-214ENST00000483519 HERC2O95714 4834 aa6.89□□□□□ -1.31
USP40-214ENST00000483519 PKHD1L1Q86WI1 4243 aa6.89□□□□□ -1.31
USP40-214ENST00000483519 KRTAP10-6P60371 365 aaPredicted RBP6.89□□□□□ -1.31
USP40-214ENST00000483519 A0A0D9SG42 100 aa6.85□□□□□ -1.31
USP40-214ENST00000483519 KRTAP23-1A1A580 65 aa6.85□□□□□ -1.31
USP40-214ENST00000483519 KRTAP13-4Q3LI77 160 aa6.85□□□□□ -1.31
USP40-214ENST00000483519 KRTAP3-3Q9BYR6 98 aa6.84□□□□□ -1.31
USP40-214ENST00000483519 SPINT4Q6UDR6 99 aa6.84□□□□□ -1.32
USP40-214ENST00000483519 FAT1Q14517 4588 aa6.82□□□□□ -1.32
USP40-214ENST00000483519 TPRXLQ17RH7 258 aa6.82□□□□□ -1.32
USP40-214ENST00000483519 KRTAP3-2Q9BYR7 98 aa6.81□□□□□ -1.32
USP40-214ENST00000483519 S4R3F8 94 aa6.79□□□□□ -1.32
USP40-214ENST00000483519 KRTAP10-8P60410 259 aa6.73□□□□□ -1.33
USP40-214ENST00000483519 CAMK2N1Q7Z7J9 78 aa6.72□□□□□ -1.33
USP40-214ENST00000483519 C10orf95Q9H7T3 257 aa6.72□□□□□ -1.33
USP40-214ENST00000483519 DMBT1Q9UGM3 2413 aaPredicted RBP6.71□□□□□ -1.34
USP40-214ENST00000483519 ABCA13Q86UQ4 5058 aa6.69□□□□□ -1.34
USP40-214ENST00000483519 MT1HL1P0DM35 61 aa6.69□□□□□ -1.34
USP40-214ENST00000483519 KRTAP12-2P59991 146 aa6.67□□□□□ -1.34
USP40-214ENST00000483519 KRTAP15-1Q3LI76 137 aa6.67□□□□□ -1.34
USP40-214ENST00000483519 XP32Q5T750 250 aa6.63□□□□□ -1.35
USP40-214ENST00000483519 KRTAP12-1P59990 96 aa6.62□□□□□ -1.35
USP40-214ENST00000483519 PCLOQ9Y6V0 5065 aa6.6□□□□□ -1.35
USP40-214ENST00000483519 FAT3Q8TDW7 4589 aa6.58□□□□□ -1.36
USP40-214ENST00000483519 MYCBP2O75592 4640 aa6.57□□□□□ -1.36
USP40-214ENST00000483519 LRP1Q07954 4544 aaKnown RBP6.56□□□□□ -1.36
USP40-214ENST00000483519 M0QZ58 72 aa6.56□□□□□ -1.36
USP40-214ENST00000483519 TNXBP22105 4242 aa6.5□□□□□ -1.37
USP40-214ENST00000483519 R4GN34 69 aa6.33□□□□□ -1.4
USP40-214ENST00000483519 HERC1Q15751 4861 aa6.32□□□□□ -1.4
USP40-214ENST00000483519 PLAC4Q8WY50 150 aa6.27□□□□□ -1.41
USP40-214ENST00000483519 HMCN2Q8NDA2 5059 aa6.22□□□□□ -1.41
USP40-214ENST00000483519 LPAP08519 4548 aa6.2□□□□□ -1.42
USP40-214ENST00000483519 LCE2DQ5TA82 110 aaPredicted RBP6.19□□□□□ -1.42
USP40-214ENST00000483519 PP632Q6XCG6 107 aa6.14□□□□□ -1.43
USP40-214ENST00000483519 LCE2AQ5TA79 106 aaPredicted RBP6.14□□□□□ -1.43
USP40-214ENST00000483519 LRP2P98164 4655 aa6.13□□□□□ -1.43
USP40-214ENST00000483519 LCE2CQ5TA81 110 aa6.12□□□□□ -1.43
USP40-214ENST00000483519 LORP23490 312 aaPredicted RBP6.11□□□□□ -1.43
USP40-214ENST00000483519 PRO2289Q9P1D8 64 aa6.05□□□□□ -1.44
USP40-214ENST00000483519 MUC17Q685J3 4493 aa6.02□□□□□ -1.45
USP40-214ENST00000483519 UBR4Q5T4S7 5183 aa5.97□□□□□ -1.45
USP40-214ENST00000483519 KRTAP4-1Q9BYQ7 146 aa5.92□□□□□ -1.46
USP40-214ENST00000483519 RNF213Q63HN8 5207 aa5.89□□□□□ -1.47
USP40-214ENST00000483519 KRTAP19-2Q3LHN2 52 aa5.87□□□□□ -1.47
USP40-214ENST00000483519 TNP1P09430 55 aa5.86□□□□□ -1.47
USP40-214ENST00000483519 LCE2BO14633 110 aa5.82□□□□□ -1.48
USP40-214ENST00000483519 SPRR5A0A1B0GTR4 108 aa5.78□□□□□ -1.48
USP40-214ENST00000483519 MUC2Q02817 5179 aa5.73□□□□□ -1.49
USP40-214ENST00000483519 MT1HP80294 61 aa5.65□□□□□ -1.5
USP40-214ENST00000483519 FAT4Q6V0I7 4981 aa5.65□□□□□ -1.51
USP40-214ENST00000483519 M0R2T5 61 aa5.63□□□□□ -1.51
USP40-214ENST00000483519 FLGP20930 4061 aaPredicted RBP5.6□□□□□ -1.51
USP40-214ENST00000483519 SPRR2GQ9BYE4 73 aa5.52□□□□□ -1.53
USP40-214ENST00000483519 INE1O15225 51 aa5.5□□□□□ -1.53
USP40-214ENST00000483519 LCE3AQ5TA76 89 aa5.47□□□□□ -1.53
USP40-214ENST00000483519 KRTAP19-1Q8IUB9 90 aa5.45□□□□□ -1.54
USP40-214ENST00000483519 KRTAP9-8Q9BYQ0 159 aa5.39□□□□□ -1.55
USP40-214ENST00000483519 MT2AP02795 61 aa5.35□□□□□ -1.55
USP40-214ENST00000483519 KRTAP8-1Q8IUC2 63 aa5.35□□□□□ -1.55
USP40-214ENST00000483519 KRTAP10-10P60014 251 aa5.34□□□□□ -1.55
USP40-214ENST00000483519 MT1FP04733 61 aa5.3□□□□□ -1.56
USP40-214ENST00000483519 KRTAP19-8Q3LI54 63 aa5.28□□□□□ -1.56
USP40-214ENST00000483519 KRTAP9-2Q9BYQ4 174 aa5.27□□□□□ -1.57
USP40-214ENST00000483519 KRTAP12-3P60328 96 aa5.22□□□□□ -1.57
USP40-214ENST00000483519 KRTAP9-3Q9BYQ3 159 aa5.22□□□□□ -1.57
USP40-214ENST00000483519 KRTAP10-12P60413 245 aa5.19□□□□□ -1.58
USP40-214ENST00000483519 KRTAP10-5P60370 271 aa5.17□□□□□ -1.58
USP40-214ENST00000483519 MT1XP80297 61 aa5.16□□□□□ -1.58
USP40-214ENST00000483519 MT1BP07438 61 aa5.12□□□□□ -1.59
USP40-214ENST00000483519 CRCT1Q9UGL9 99 aa5.05□□□□□ -1.6
USP40-214ENST00000483519 KRTAP10-7P60409 375 aaPredicted RBP5.03□□□□□ -1.6
USP40-214ENST00000483519 KRTAP9-6A0A140TA67 174 aa5.02□□□□□ -1.61
USP40-214ENST00000483519 USH2AO75445 5202 aa4.96□□□□□ -1.62
USP40-214ENST00000483519 KRTAP19-6Q3LI70 58 aa4.92□□□□□ -1.62
USP40-214ENST00000483519 LCE3CQ5T5A8 94 aa4.92□□□□□ -1.62
USP40-214ENST00000483519 KRTAP19-5Q3LI72 72 aa4.88□□□□□ -1.63
USP40-214ENST00000483519 FSIP2Q5CZC0 6907 aa4.88□□□□□ -1.63
USP40-214ENST00000483519 SSPOA2VEC9 5147 aa4.83□□□□□ -1.64
USP40-214ENST00000483519 KRTAP2-2Q9BYT5 123 aa4.77□□□□□ -1.65
USP40-214ENST00000483519 LCE5AQ5TCM9 118 aa4.75□□□□□ -1.65
USP40-214ENST00000483519 KRTAP19-4Q3LI73 84 aa4.74□□□□□ -1.65
USP40-214ENST00000483519 FCGBPQ9Y6R7 5405 aaPredicted RBP4.73□□□□□ -1.65
USP40-214ENST00000483519 KRTAP9-6A8MVA2 160 aa4.72□□□□□ -1.65
USP40-214ENST00000483519 KRTAP2-3P0C7H8 128 aa4.7□□□□□ -1.66
USP40-214ENST00000483519 KRTAP2-4Q9BYR9 128 aa4.7□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 53.1 ms