RNA–Protein interactions for RNA: ENST00000481194.1

CCM2-214, Transcript of CCM2 scaffold protein, humanhuman

TSL 1 (best)

Gene CCM2, Length 5,304 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2-214ENST00000481194 P0C880 135 aa9.4□□□□□ -0.9
CCM2-214ENST00000481194 DYNC1H1Q14204 4646 aaKnown RBP9.39□□□□□ -0.91
CCM2-214ENST00000481194 PP632Q6XCG6 107 aa9.32□□□□□ -0.92
CCM2-214ENST00000481194 DNAH2Q9P225 4427 aa9.32□□□□□ -0.92
CCM2-214ENST00000481194 FAT2Q9NYQ8 4349 aa9.26□□□□□ -0.93
CCM2-214ENST00000481194 DNAH8Q96JB1 4490 aa9.25□□□□□ -0.93
CCM2-214ENST00000481194 LRP1BQ9NZR2 4599 aa9.24□□□□□ -0.93
CCM2-214ENST00000481194 NDUFAF8A1L188 74 aa9.23□□□□□ -0.93
CCM2-214ENST00000481194 PRO2289Q9P1D8 64 aa9.23□□□□□ -0.93
CCM2-214ENST00000481194 DNAH7Q8WXX0 4024 aa9.22□□□□□ -0.93
CCM2-214ENST00000481194 SRRM2Q9UQ35 2752 aaKnown RBP9.21□□□□□ -0.93
CCM2-214ENST00000481194 C10orf95Q9H7T3 257 aa9.13□□□□□ -0.95
CCM2-214ENST00000481194 SACSQ9NZJ4 4579 aa9.09□□□□□ -0.95
CCM2-214ENST00000481194 KMT2AQ03164 3969 aa9.06□□□□□ -0.96
CCM2-214ENST00000481194 KRTAP10-6P60371 365 aaPredicted RBP9.02□□□□□ -0.97
CCM2-214ENST00000481194 KRTAP3-3Q9BYR6 98 aa9.01□□□□□ -0.97
CCM2-214ENST00000481194 RYR2Q92736 4967 aa8.96□□□□□ -0.98
CCM2-214ENST00000481194 KRTAP12-2P59991 146 aa8.94□□□□□ -0.98
CCM2-214ENST00000481194 KRTAP12-1P59990 96 aa8.93□□□□□ -0.98
CCM2-214ENST00000481194 CSMD3Q7Z407 3707 aa8.91□□□□□ -0.98
CCM2-214ENST00000481194 FAT1Q14517 4588 aa8.87□□□□□ -0.99
CCM2-214ENST00000481194 KRTAP3-2Q9BYR7 98 aa8.85□□□□□ -0.99
CCM2-214ENST00000481194 HECTD4Q9Y4D8 3996 aa8.83□□□□□ -1
CCM2-214ENST00000481194 APOBP04114 4563 aaKnown RBP8.82□□□□□ -1
CCM2-214ENST00000481194 KRTAP13-4Q3LI77 160 aa8.81□□□□□ -1
CCM2-214ENST00000481194 RYR1P21817 5038 aa8.79□□□□□ -1
CCM2-214ENST00000481194 VPS13BQ7Z7G8 4022 aa8.76□□□□□ -1.01
CCM2-214ENST00000481194 KRTAP17-1Q9BYP8 105 aa8.74□□□□□ -1.01
CCM2-214ENST00000481194 LYSTQ99698 3801 aa8.71□□□□□ -1.02
CCM2-214ENST00000481194 KRTAP4-1Q9BYQ7 146 aa8.69□□□□□ -1.02
CCM2-214ENST00000481194 RYR3Q15413 4870 aa8.66□□□□□ -1.02
CCM2-214ENST00000481194 HYDINQ4G0P3 5121 aa8.65□□□□□ -1.03
CCM2-214ENST00000481194 BIRC6Q9NR09 4857 aa8.59□□□□□ -1.03
CCM2-214ENST00000481194 PKD1P98161 4303 aa8.56□□□□□ -1.04
CCM2-214ENST00000481194 KIAA1109Q2LD37 5005 aa8.55□□□□□ -1.04
CCM2-214ENST00000481194 HSPG2P98160 4391 aa8.53□□□□□ -1.04
CCM2-214ENST00000481194 MT1HP80294 61 aa8.51□□□□□ -1.05
CCM2-214ENST00000481194 FRAS1Q86XX4 4008 aa8.51□□□□□ -1.05
CCM2-214ENST00000481194 FAT3Q8TDW7 4589 aa8.39□□□□□ -1.07
CCM2-214ENST00000481194 PKHD1L1Q86WI1 4243 aa8.36□□□□□ -1.07
CCM2-214ENST00000481194 LORP23490 312 aaPredicted RBP8.34□□□□□ -1.07
CCM2-214ENST00000481194 PKHD1P08F94 4074 aa8.3□□□□□ -1.08
CCM2-214ENST00000481194 MT2AP02795 61 aa8.27□□□□□ -1.09
CCM2-214ENST00000481194 LRP1Q07954 4544 aaKnown RBP8.24□□□□□ -1.09
CCM2-214ENST00000481194 KRTAP23-1A1A580 65 aa8.24□□□□□ -1.09
CCM2-214ENST00000481194 KRTAP10-12P60413 245 aa8.22□□□□□ -1.09
CCM2-214ENST00000481194 HERC2O95714 4834 aa8.22□□□□□ -1.09
CCM2-214ENST00000481194 SPRR2GQ9BYE4 73 aa8.22□□□□□ -1.09
CCM2-214ENST00000481194 MYCBP2O75592 4640 aa8.2□□□□□ -1.1
CCM2-214ENST00000481194 KMT2CQ8NEZ4 4911 aaKnown RBP8.2□□□□□ -1.1
CCM2-214ENST00000481194 HERC1Q15751 4861 aa8.16□□□□□ -1.1
CCM2-214ENST00000481194 KRTAP15-1Q3LI76 137 aa8.11□□□□□ -1.11
CCM2-214ENST00000481194 TNXBP22105 4242 aa8.1□□□□□ -1.11
CCM2-214ENST00000481194 MT1FP04733 61 aa8.09□□□□□ -1.11
CCM2-214ENST00000481194 EPPK1P58107 5090 aaKnown RBP7.93□□□□□ -1.14
CCM2-214ENST00000481194 LCE2CQ5TA81 110 aa7.9□□□□□ -1.14
CCM2-214ENST00000481194 KRTAP12-3P60328 96 aa7.88□□□□□ -1.15
CCM2-214ENST00000481194 LCE3AQ5TA76 89 aa7.88□□□□□ -1.15
CCM2-214ENST00000481194 MUC17Q685J3 4493 aa7.87□□□□□ -1.15
CCM2-214ENST00000481194 KRTAP19-8Q3LI54 63 aa7.84□□□□□ -1.15
CCM2-214ENST00000481194 ABCA13Q86UQ4 5058 aa7.76□□□□□ -1.17
CCM2-214ENST00000481194 KRTAP9-8Q9BYQ0 159 aa7.76□□□□□ -1.17
CCM2-214ENST00000481194 KRTAP19-1Q8IUB9 90 aa7.75□□□□□ -1.17
CCM2-214ENST00000481194 KRTAP19-2Q3LHN2 52 aa7.74□□□□□ -1.17
CCM2-214ENST00000481194 KRTAP8-1Q8IUC2 63 aa7.73□□□□□ -1.17
CCM2-214ENST00000481194 INE1O15225 51 aa7.72□□□□□ -1.17
CCM2-214ENST00000481194 PCLOQ9Y6V0 5065 aa7.68□□□□□ -1.18
CCM2-214ENST00000481194 LRP2P98164 4655 aa7.67□□□□□ -1.18
CCM2-214ENST00000481194 LPAP08519 4548 aa7.63□□□□□ -1.19
CCM2-214ENST00000481194 KRTAP9-3Q9BYQ3 159 aa7.57□□□□□ -1.2
CCM2-214ENST00000481194 MT1BP07438 61 aa7.52□□□□□ -1.21
CCM2-214ENST00000481194 KRTAP10-5P60370 271 aa7.51□□□□□ -1.21
CCM2-214ENST00000481194 KRTAP19-4Q3LI73 84 aa7.44□□□□□ -1.22
CCM2-214ENST00000481194 FLGP20930 4061 aaPredicted RBP7.43□□□□□ -1.22
CCM2-214ENST00000481194 MT1XP80297 61 aa7.42□□□□□ -1.22
CCM2-214ENST00000481194 CRCT1Q9UGL9 99 aa7.39□□□□□ -1.23
CCM2-214ENST00000481194 KRTAP19-5Q3LI72 72 aa7.31□□□□□ -1.24
CCM2-214ENST00000481194 LCE2AQ5TA79 106 aaPredicted RBP7.29□□□□□ -1.24
CCM2-214ENST00000481194 HMCN2Q8NDA2 5059 aa7.28□□□□□ -1.24
CCM2-214ENST00000481194 KRTAP10-7P60409 375 aaPredicted RBP7.28□□□□□ -1.24
CCM2-214ENST00000481194 SPRR2FQ96RM1 72 aa7.23□□□□□ -1.25
CCM2-214ENST00000481194 LCE2BO14633 110 aa7.2□□□□□ -1.26
CCM2-214ENST00000481194 RNF213Q63HN8 5207 aa7.18□□□□□ -1.26
CCM2-214ENST00000481194 LCE2DQ5TA82 110 aaPredicted RBP7.14□□□□□ -1.27
CCM2-214ENST00000481194 LCE3CQ5T5A8 94 aa7.09□□□□□ -1.27
CCM2-214ENST00000481194 FAT4Q6V0I7 4981 aa7.07□□□□□ -1.28
CCM2-214ENST00000481194 KRTAP19-6Q3LI70 58 aa7.03□□□□□ -1.28
CCM2-214ENST00000481194 KRTAP9-2Q9BYQ4 174 aa6.9□□□□□ -1.3
CCM2-214ENST00000481194 SPRR2EP22531 72 aa6.9□□□□□ -1.31
CCM2-214ENST00000481194 SPRR2BP35325 72 aa6.9□□□□□ -1.31
CCM2-214ENST00000481194 SPRR2AP35326 72 aa6.9□□□□□ -1.31
CCM2-214ENST00000481194 KRTAP4-8A0A0G2JLE6 195 aa6.84□□□□□ -1.31
CCM2-214ENST00000481194 KRTAP4-8Q9BYQ9 185 aa6.84□□□□□ -1.31
CCM2-214ENST00000481194 MT1GP13640 62 aa6.81□□□□□ -1.32
CCM2-214ENST00000481194 UBR4Q5T4S7 5183 aa6.7□□□□□ -1.34
CCM2-214ENST00000481194 SPRR2DP22532 72 aa6.7□□□□□ -1.34
CCM2-214ENST00000481194 MT1EP04732 61 aa6.65□□□□□ -1.34
CCM2-214ENST00000481194 KRTAP19-3Q7Z4W3 81 aa6.65□□□□□ -1.35
CCM2-214ENST00000481194 SPRR5A0A1B0GTR4 108 aa6.61□□□□□ -1.35
CCM2-214ENST00000481194 MT1LQ93083 61 aa6.6□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 72.4 ms