RNA–Protein interactions for RNA: ENST00000478934.5

VPS52-217, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 2

Gene VPS52, Length 2,602 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-217ENST00000478934 Q5VSD8 79 aa5.7□□□□□ -1.5
VPS52-217ENST00000478934 KRTAP10-8P60410 259 aa5.67□□□□□ -1.5
VPS52-217ENST00000478934 CSAG1Q6PB30 78 aa5.65□□□□□ -1.5
VPS52-217ENST00000478934 A0A1B0GU33 70 aa5.64□□□□□ -1.51
VPS52-217ENST00000478934 LPAP08519 4548 aa5.63□□□□□ -1.51
VPS52-217ENST00000478934 EPPK1P58107 5090 aaKnown RBP5.62□□□□□ -1.51
VPS52-217ENST00000478934 COX6B2Q6YFQ2 88 aa5.62□□□□□ -1.51
VPS52-217ENST00000478934 H1FX-AS1Q4G0G2 97 aa5.61□□□□□ -1.51
VPS52-217ENST00000478934 XP32Q5T750 250 aa5.59□□□□□ -1.51
VPS52-217ENST00000478934 CRIPTQ9P021 101 aa5.57□□□□□ -1.52
VPS52-217ENST00000478934 LRP2P98164 4655 aa5.57□□□□□ -1.52
VPS52-217ENST00000478934 RPL37P61927 97 aaKnown RBP5.56□□□□□ -1.52
VPS52-217ENST00000478934 LINC01554Q52M75 96 aa5.56□□□□□ -1.52
VPS52-217ENST00000478934 ABCA13Q86UQ4 5058 aa5.55□□□□□ -1.52
VPS52-217ENST00000478934 MT1HL1P0DM35 61 aa5.55□□□□□ -1.52
VPS52-217ENST00000478934 KRTAP3-3Q9BYR6 98 aa5.55□□□□□ -1.52
VPS52-217ENST00000478934 A0A0D9SG42 100 aa5.51□□□□□ -1.53
VPS52-217ENST00000478934 KRTAP13-4Q3LI77 160 aa5.5□□□□□ -1.53
VPS52-217ENST00000478934 KRTAP10-6P60371 365 aaPredicted RBP5.48□□□□□ -1.53
VPS52-217ENST00000478934 KRTAP4-5Q9BYR2 181 aa5.45□□□□□ -1.54
VPS52-217ENST00000478934 KRTAP3-2Q9BYR7 98 aa5.45□□□□□ -1.54
VPS52-217ENST00000478934 P0C880 135 aa5.44□□□□□ -1.54
VPS52-217ENST00000478934 S4R3F8 94 aa5.44□□□□□ -1.54
VPS52-217ENST00000478934 KRTAP25-1Q3LHN0 102 aa5.42□□□□□ -1.54
VPS52-217ENST00000478934 K7ERS5 55 aa5.4□□□□□ -1.55
VPS52-217ENST00000478934 ROMO1P60602 79 aa5.32□□□□□ -1.56
VPS52-217ENST00000478934 TPRXLQ17RH7 258 aa5.32□□□□□ -1.56
VPS52-217ENST00000478934 C10orf95Q9H7T3 257 aa5.31□□□□□ -1.56
VPS52-217ENST00000478934 KRTAP12-2P59991 146 aa5.3□□□□□ -1.56
VPS52-217ENST00000478934 SPINT4Q6UDR6 99 aa5.28□□□□□ -1.56
VPS52-217ENST00000478934 HERC2O95714 4834 aa5.27□□□□□ -1.57
VPS52-217ENST00000478934 MUC2Q02817 5179 aa5.26□□□□□ -1.57
VPS52-217ENST00000478934 MUC17Q685J3 4493 aa5.24□□□□□ -1.57
VPS52-217ENST00000478934 KRTAP4-1Q9BYQ7 146 aa5.23□□□□□ -1.57
VPS52-217ENST00000478934 KRTAP12-1P59990 96 aa5.22□□□□□ -1.57
VPS52-217ENST00000478934 H3BS24 57 aa5.21□□□□□ -1.58
VPS52-217ENST00000478934 J3QL48 77 aa5.15□□□□□ -1.59
VPS52-217ENST00000478934 LORP23490 312 aaPredicted RBP5.14□□□□□ -1.59
VPS52-217ENST00000478934 M0QZ58 72 aa5.13□□□□□ -1.59
VPS52-217ENST00000478934 HERC1Q15751 4861 aa5.11□□□□□ -1.59
VPS52-217ENST00000478934 SEC61BP60468 96 aaKnown RBP5.11□□□□□ -1.59
VPS52-217ENST00000478934 R4GN34 69 aa5.09□□□□□ -1.6
VPS52-217ENST00000478934 KRTAP19-2Q3LHN2 52 aa5.06□□□□□ -1.6
VPS52-217ENST00000478934 PCLOQ9Y6V0 5065 aa5.06□□□□□ -1.6
VPS52-217ENST00000478934 BIRC6Q9NR09 4857 aa5.05□□□□□ -1.6
VPS52-217ENST00000478934 FAT4Q6V0I7 4981 aa4.98□□□□□ -1.61
VPS52-217ENST00000478934 HMCN2Q8NDA2 5059 aa4.96□□□□□ -1.61
VPS52-217ENST00000478934 FLGP20930 4061 aaPredicted RBP4.96□□□□□ -1.62
VPS52-217ENST00000478934 KRTAP15-1Q3LI76 137 aa4.95□□□□□ -1.62
VPS52-217ENST00000478934 NDUFAF8A1L188 74 aa4.92□□□□□ -1.62
VPS52-217ENST00000478934 RNF213Q63HN8 5207 aa4.92□□□□□ -1.62
VPS52-217ENST00000478934 UBR4Q5T4S7 5183 aa4.86□□□□□ -1.63
VPS52-217ENST00000478934 CAMK2N1Q7Z7J9 78 aa4.84□□□□□ -1.63
VPS52-217ENST00000478934 LCE2CQ5TA81 110 aa4.79□□□□□ -1.64
VPS52-217ENST00000478934 PLAC4Q8WY50 150 aa4.75□□□□□ -1.65
VPS52-217ENST00000478934 M0R2T5 61 aa4.68□□□□□ -1.66
VPS52-217ENST00000478934 MT1HP80294 61 aa4.65□□□□□ -1.67
VPS52-217ENST00000478934 KRTAP19-1Q8IUB9 90 aa4.64□□□□□ -1.67
VPS52-217ENST00000478934 TNP1P09430 55 aa4.59□□□□□ -1.67
VPS52-217ENST00000478934 PP632Q6XCG6 107 aa4.59□□□□□ -1.67
VPS52-217ENST00000478934 MT1FP04733 61 aa4.59□□□□□ -1.67
VPS52-217ENST00000478934 SPRR2GQ9BYE4 73 aa4.59□□□□□ -1.68
VPS52-217ENST00000478934 MT2AP02795 61 aa4.57□□□□□ -1.68
VPS52-217ENST00000478934 KRTAP10-10P60014 251 aa4.57□□□□□ -1.68
VPS52-217ENST00000478934 KRTAP9-8Q9BYQ0 159 aa4.54□□□□□ -1.68
VPS52-217ENST00000478934 A0A0A0MQY5 61 aa4.53□□□□□ -1.68
VPS52-217ENST00000478934 LUZP6Q538Z0 58 aa4.49□□□□□ -1.69
VPS52-217ENST00000478934 LCE3AQ5TA76 89 aa4.44□□□□□ -1.7
VPS52-217ENST00000478934 MT1BP07438 61 aa4.41□□□□□ -1.7
VPS52-217ENST00000478934 KRTAP23-1A1A580 65 aa4.38□□□□□ -1.71
VPS52-217ENST00000478934 KRTAP19-8Q3LI54 63 aa4.38□□□□□ -1.71
VPS52-217ENST00000478934 USH2AO75445 5202 aa4.37□□□□□ -1.71
VPS52-217ENST00000478934 KRTAP10-5P60370 271 aa4.37□□□□□ -1.71
VPS52-217ENST00000478934 MT1XP80297 61 aa4.36□□□□□ -1.71
VPS52-217ENST00000478934 KRTAP9-3Q9BYQ3 159 aa4.34□□□□□ -1.72
VPS52-217ENST00000478934 SPRR5A0A1B0GTR4 108 aa4.33□□□□□ -1.72
VPS52-217ENST00000478934 KRTAP10-7P60409 375 aaPredicted RBP4.28□□□□□ -1.72
VPS52-217ENST00000478934 KMT2DO14686 5537 aa4.27□□□□□ -1.73
VPS52-217ENST00000478934 KRTAP8-1Q8IUC2 63 aa4.23□□□□□ -1.73
VPS52-217ENST00000478934 LCE2BO14633 110 aa4.22□□□□□ -1.73
VPS52-217ENST00000478934 KRTAP10-12P60413 245 aa4.22□□□□□ -1.73
VPS52-217ENST00000478934 KRTAP12-3P60328 96 aa4.18□□□□□ -1.74
VPS52-217ENST00000478934 LOC100996750A0A140TA64 210 aa4.11□□□□□ -1.75
VPS52-217ENST00000478934 LCE2AQ5TA79 106 aaPredicted RBP4.11□□□□□ -1.75
VPS52-217ENST00000478934 LCE2DQ5TA82 110 aaPredicted RBP4.11□□□□□ -1.75
VPS52-217ENST00000478934 KRTAP4-6Q9BYQ5 205 aa4.11□□□□□ -1.75
VPS52-217ENST00000478934 PRO2289Q9P1D8 64 aa4.09□□□□□ -1.75
VPS52-217ENST00000478934 KRTAP4-8A0A0G2JLE6 195 aa4.08□□□□□ -1.76
VPS52-217ENST00000478934 KRTAP4-8Q9BYQ9 185 aa4.08□□□□□ -1.76
VPS52-217ENST00000478934 KRTAP19-5Q3LI72 72 aa4.07□□□□□ -1.76
VPS52-217ENST00000478934 FSIP2Q5CZC0 6907 aa4.06□□□□□ -1.76
VPS52-217ENST00000478934 SSPOA2VEC9 5147 aa3.97□□□□□ -1.77
VPS52-217ENST00000478934 LCE3CQ5T5A8 94 aa3.92□□□□□ -1.78
VPS52-217ENST00000478934 KRTAP4-7Q9BYR0 210 aa3.91□□□□□ -1.78
VPS52-217ENST00000478934 KRTAP19-7Q3SYF9 63 aa3.89□□□□□ -1.79
VPS52-217ENST00000478934 KRTAP9-6A8MVA2 160 aa3.88□□□□□ -1.79
VPS52-217ENST00000478934 FCGBPQ9Y6R7 5405 aaPredicted RBP3.78□□□□□ -1.8
VPS52-217ENST00000478934 INE1O15225 51 aa3.76□□□□□ -1.81
VPS52-217ENST00000478934 MT1EP04732 61 aa3.76□□□□□ -1.81
VPS52-217ENST00000478934 MUC12Q9UKN1 5478 aa3.76□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 81.2 ms