RNA–Protein interactions for RNA: ENST00000471181.6

BRCA1-210, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best) BASIC

Gene BRCA1, Length 5,936 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-210ENST00000471181 PLECQ15149 4684 aaKnown RBP3.38□□□□□ -1.87
BRCA1-210ENST00000471181 DNAH8Q96JB1 4490 aa3.38□□□□□ -1.87
BRCA1-210ENST00000471181 DNAH10Q8IVF4 4471 aa3.38□□□□□ -1.87
BRCA1-210ENST00000471181 KMT2AQ03164 3969 aa3.36□□□□□ -1.87
BRCA1-210ENST00000471181 COL7A1Q02388 2944 aa3.36□□□□□ -1.87
BRCA1-210ENST00000471181 HYDINQ4G0P3 5121 aa3.36□□□□□ -1.87
BRCA1-210ENST00000471181 NIPBLQ6KC79 2804 aaeCLIP3.34□□□□□ -1.87
BRCA1-210ENST00000471181 FBN3Q75N90 2809 aa3.34□□□□□ -1.87
BRCA1-210ENST00000471181 TENM1Q9UKZ4 2725 aa3.33□□□□□ -1.88
BRCA1-210ENST00000471181 SACSQ9NZJ4 4579 aa3.33□□□□□ -1.88
BRCA1-210ENST00000471181 INE1O15225 51 aa3.32□□□□□ -1.88
BRCA1-210ENST00000471181 NBEAL2Q6ZNJ1 2754 aa3.32□□□□□ -1.88
BRCA1-210ENST00000471181 KRTAP12-1P59990 96 aa3.32□□□□□ -1.88
BRCA1-210ENST00000471181 VWFP04275 2813 aa3.32□□□□□ -1.88
BRCA1-210ENST00000471181 FAT3Q8TDW7 4589 aa3.31□□□□□ -1.88
BRCA1-210ENST00000471181 DNAH5Q8TE73 4624 aa3.29□□□□□ -1.88
BRCA1-210ENST00000471181 VPS13BQ7Z7G8 4022 aa3.28□□□□□ -1.88
BRCA1-210ENST00000471181 MEGF8Q7Z7M0 2845 aa3.27□□□□□ -1.89
BRCA1-210ENST00000471181 PKD1L1Q8TDX9 2849 aa3.27□□□□□ -1.89
BRCA1-210ENST00000471181 TENM3Q9P273 2699 aa3.25□□□□□ -1.89
BRCA1-210ENST00000471181 RYR2Q92736 4967 aa3.25□□□□□ -1.89
BRCA1-210ENST00000471181 RYR3Q15413 4870 aa3.23□□□□□ -1.89
BRCA1-210ENST00000471181 DYNC1H1Q14204 4646 aaKnown RBP3.2□□□□□ -1.9
BRCA1-210ENST00000471181 TENM2Q9NT68 2774 aa3.19□□□□□ -1.9
BRCA1-210ENST00000471181 KMT2CQ8NEZ4 4911 aaKnown RBP3.19□□□□□ -1.9
BRCA1-210ENST00000471181 KRTAP10-6P60371 365 aaPredicted RBP3.19□□□□□ -1.9
BRCA1-210ENST00000471181 KRTAP10-12P60413 245 aa3.18□□□□□ -1.9
BRCA1-210ENST00000471181 KRTAP10-5P60370 271 aa3.15□□□□□ -1.9
BRCA1-210ENST00000471181 APOBP04114 4563 aaKnown RBP3.15□□□□□ -1.9
BRCA1-210ENST00000471181 HSPG2P98160 4391 aa3.15□□□□□ -1.91
BRCA1-210ENST00000471181 KRTAP3-1Q9BYR8 98 aa3.11□□□□□ -1.91
BRCA1-210ENST00000471181 TNXBP22105 4242 aa3.09□□□□□ -1.92
BRCA1-210ENST00000471181 KRTAP12-3P60328 96 aa3.07□□□□□ -1.92
BRCA1-210ENST00000471181 LRP1BQ9NZR2 4599 aa3.05□□□□□ -1.92
BRCA1-210ENST00000471181 LCE3AQ5TA76 89 aa3.04□□□□□ -1.92
BRCA1-210ENST00000471181 EPPK1P58107 5090 aaKnown RBP3.02□□□□□ -1.93
BRCA1-210ENST00000471181 FAT1Q14517 4588 aa3.02□□□□□ -1.93
BRCA1-210ENST00000471181 KRTAP8-1Q8IUC2 63 aa2.97□□□□□ -1.93
BRCA1-210ENST00000471181 LORP23490 312 aaPredicted RBP2.96□□□□□ -1.94
BRCA1-210ENST00000471181 SRRM2Q9UQ35 2752 aaKnown RBP2.95□□□□□ -1.94
BRCA1-210ENST00000471181 RYR1P21817 5038 aa2.92□□□□□ -1.94
BRCA1-210ENST00000471181 TGP01266 2768 aa2.91□□□□□ -1.94
BRCA1-210ENST00000471181 HERC2O95714 4834 aa2.9□□□□□ -1.94
BRCA1-210ENST00000471181 ABCA13Q86UQ4 5058 aa2.9□□□□□ -1.94
BRCA1-210ENST00000471181 KRTAP17-1Q9BYP8 105 aa2.9□□□□□ -1.95
BRCA1-210ENST00000471181 KRTAP3-3Q9BYR6 98 aa2.9□□□□□ -1.95
BRCA1-210ENST00000471181 KRTAP3-2Q9BYR7 98 aa2.9□□□□□ -1.95
BRCA1-210ENST00000471181 MUC17Q685J3 4493 aa2.88□□□□□ -1.95
BRCA1-210ENST00000471181 KRTAP10-7P60409 375 aaPredicted RBP2.87□□□□□ -1.95
BRCA1-210ENST00000471181 KRTAP23-1A1A580 65 aa2.86□□□□□ -1.95
BRCA1-210ENST00000471181 LCE2DQ5TA82 110 aaPredicted RBP2.84□□□□□ -1.95
BRCA1-210ENST00000471181 BIRC6Q9NR09 4857 aa2.84□□□□□ -1.96
BRCA1-210ENST00000471181 MYCBP2O75592 4640 aa2.82□□□□□ -1.96
BRCA1-210ENST00000471181 KRTAP10-4P60372 401 aaPredicted RBP2.8□□□□□ -1.96
BRCA1-210ENST00000471181 MT1HL1P0DM35 61 aa2.8□□□□□ -1.96
BRCA1-210ENST00000471181 LRP1Q07954 4544 aaKnown RBP2.77□□□□□ -1.97
BRCA1-210ENST00000471181 PCLOQ9Y6V0 5065 aa2.76□□□□□ -1.97
BRCA1-210ENST00000471181 KRTAP4-5Q9BYR2 181 aa2.75□□□□□ -1.97
BRCA1-210ENST00000471181 SPRR2FQ96RM1 72 aa2.74□□□□□ -1.97
BRCA1-210ENST00000471181 LPAP08519 4548 aa2.71□□□□□ -1.98
BRCA1-210ENST00000471181 FLGP20930 4061 aaPredicted RBP2.71□□□□□ -1.98
BRCA1-210ENST00000471181 KIAA1109Q2LD37 5005 aa2.69□□□□□ -1.98
BRCA1-210ENST00000471181 KRTAP19-5Q3LI72 72 aa2.66□□□□□ -1.98
BRCA1-210ENST00000471181 HMCN2Q8NDA2 5059 aa2.66□□□□□ -1.98
BRCA1-210ENST00000471181 LCE3BQ5TA77 95 aa2.63□□□□□ -1.99
BRCA1-210ENST00000471181 LCE3CQ5T5A8 94 aa2.63□□□□□ -1.99
BRCA1-210ENST00000471181 SPRR2EP22531 72 aa2.61□□□□□ -1.99
BRCA1-210ENST00000471181 SPRR2BP35325 72 aa2.61□□□□□ -1.99
BRCA1-210ENST00000471181 SPRR2AP35326 72 aa2.61□□□□□ -1.99
BRCA1-210ENST00000471181 HERC1Q15751 4861 aa2.58□□□□□ -2
BRCA1-210ENST00000471181 MT1HP80294 61 aa2.57□□□□□ -2
BRCA1-210ENST00000471181 LCE2BO14633 110 aa2.54□□□□□ -2
BRCA1-210ENST00000471181 MT2AP02795 61 aa2.53□□□□□ -2.01
BRCA1-210ENST00000471181 SPRR2DP22532 72 aa2.53□□□□□ -2.01
BRCA1-210ENST00000471181 LCE2CQ5TA81 110 aa2.52□□□□□ -2.01
BRCA1-210ENST00000471181 KRTAP12-4P60329 112 aa2.52□□□□□ -2.01
BRCA1-210ENST00000471181 LRP2P98164 4655 aa2.51□□□□□ -2.01
BRCA1-210ENST00000471181 MT1GP13640 62 aa2.49□□□□□ -2.01
BRCA1-210ENST00000471181 KRTAP4-1Q9BYQ7 146 aa2.48□□□□□ -2.01
BRCA1-210ENST00000471181 KRTAP19-2Q3LHN2 52 aa2.47□□□□□ -2.01
BRCA1-210ENST00000471181 MT1FP04733 61 aa2.47□□□□□ -2.01
BRCA1-210ENST00000471181 SPRR2GQ9BYE4 73 aa2.47□□□□□ -2.01
BRCA1-210ENST00000471181 LCE2AQ5TA79 106 aaPredicted RBP2.44□□□□□ -2.02
BRCA1-210ENST00000471181 LCE3DQ9BYE3 92 aa2.43□□□□□ -2.02
BRCA1-210ENST00000471181 MUC2Q02817 5179 aa2.4□□□□□ -2.02
BRCA1-210ENST00000471181 LCE3EQ5T5B0 92 aa2.4□□□□□ -2.03
BRCA1-210ENST00000471181 UBR4Q5T4S7 5183 aa2.39□□□□□ -2.03
BRCA1-210ENST00000471181 RNF213Q63HN8 5207 aa2.39□□□□□ -2.03
BRCA1-210ENST00000471181 KRTAP19-4Q3LI73 84 aa2.38□□□□□ -2.03
BRCA1-210ENST00000471181 FAT4Q6V0I7 4981 aa2.29□□□□□ -2.04
BRCA1-210ENST00000471181 SPRR5A0A1B0GTR4 108 aa2.29□□□□□ -2.04
BRCA1-210ENST00000471181 LCE1BQ5T7P3 118 aa2.29□□□□□ -2.04
BRCA1-210ENST00000471181 PRM1P04553 51 aa2.28□□□□□ -2.04
BRCA1-210ENST00000471181 MT4P47944 62 aa2.28□□□□□ -2.04
BRCA1-210ENST00000471181 KRTAP4-8A0A0G2JLE6 195 aa2.25□□□□□ -2.05
BRCA1-210ENST00000471181 KRTAP4-8Q9BYQ9 185 aa2.25□□□□□ -2.05
BRCA1-210ENST00000471181 MT1XP80297 61 aa2.24□□□□□ -2.05
BRCA1-210ENST00000471181 LCE1DQ5T752 114 aa2.23□□□□□ -2.05
BRCA1-210ENST00000471181 KRTAP19-8Q3LI54 63 aa2.2□□□□□ -2.06
BRCA1-210ENST00000471181 KRTAP19-1Q8IUB9 90 aa2.19□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms