RNA–Protein interactions for RNA: ENST00000471181.6

BRCA1-210, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best) BASIC

Gene BRCA1, Length 5,936 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-210ENST00000471181 DCAF8L2P0C7V8 631 aa11.51□□□□□ -0.57
BRCA1-210ENST00000471181 PELP1Q8IZL8 1130 aaKnown RBP11.37□□□□□ -0.59
BRCA1-210ENST00000471181 ERICH6Q7L0X2 663 aa11.09□□□□□ -0.63
BRCA1-210ENST00000471181 NISCHQ9Y2I1 1504 aa11.09□□□□□ -0.63
BRCA1-210ENST00000471181 EHMT2Q96KQ7 1210 aa10.99□□□□□ -0.65
BRCA1-210ENST00000471181 CCER1Q8TC90 406 aaPredicted RBP10.86□□□□□ -0.67
BRCA1-210ENST00000471181 MYT1Q01538 1121 aa10.83□□□□□ -0.68
BRCA1-210ENST00000471181 SUPT5HO00267 1087 aaKnown RBP10.8□□□□□ -0.68
BRCA1-210ENST00000471181 APLP2Q06481 763 aa10.72□□□□□ -0.69
BRCA1-210ENST00000471181 TTBK1Q5TCY1 1321 aaPredicted RBP10.65□□□□□ -0.71
BRCA1-210ENST00000471181 FAM9AQ8IZU1 332 aaPredicted RBP10.58□□□□□ -0.72
BRCA1-210ENST00000471181 CENPBP07199 599 aaPredicted RBP10.56□□□□□ -0.72
BRCA1-210ENST00000471181 NEFLP07196 543 aa10.51□□□□□ -0.73
BRCA1-210ENST00000471181 DAXXQ9UER7 740 aaPredicted RBP10.47□□□□□ -0.73
BRCA1-210ENST00000471181 PCGF6Q9BYE7 350 aa10.45□□□□□ -0.74
BRCA1-210ENST00000471181 YTHDC1Q96MU7 727 aaKnown RBP10.44□□□□□ -0.74
BRCA1-210ENST00000471181 RANGAP1P46060 587 aaPredicted RBP10.42□□□□□ -0.74
BRCA1-210ENST00000471181 ATP1B4Q9UN42 357 aaPredicted RBP10.39□□□□□ -0.75
BRCA1-210ENST00000471181 SHROOM4Q9ULL8 1493 aa10.39□□□□□ -0.75
BRCA1-210ENST00000471181 POLR3GLQ9BT43 218 aa10.21□□□□□ -0.78
BRCA1-210ENST00000471181 ZNF316A6NFI3 1004 aaPredicted RBP10.2□□□□□ -0.78
BRCA1-210ENST00000471181 ZEB1P37275 1124 aaPredicted RBP10.16□□□□□ -0.78
BRCA1-210ENST00000471181 CNGB1Q14028 1251 aaPredicted RBP10.15□□□□□ -0.79
BRCA1-210ENST00000471181 RTL5Q5HYW3 569 aaPredicted RBP10.15□□□□□ -0.79
BRCA1-210ENST00000471181 MYT1LQ9UL68 1186 aa10.14□□□□□ -0.79
BRCA1-210ENST00000471181 CLSPNQ9HAW4 1339 aa10.11□□□□□ -0.79
BRCA1-210ENST00000471181 CHIC1Q5VXU3 224 aa10.1□□□□□ -0.79
BRCA1-210ENST00000471181 SLC4A1APQ9BWU0 796 aaKnown RBP10.09□□□□□ -0.79
BRCA1-210ENST00000471181 CCDC180Q9P1Z9 1646 aa10.07□□□□□ -0.8
BRCA1-210ENST00000471181 UBTFP17480 764 aaKnown RBP9.98□□□□□ -0.81
BRCA1-210ENST00000471181 PPARGC1BQ86YN6 1023 aaKnown RBP9.94□□□□□ -0.82
BRCA1-210ENST00000471181 BCL11AQ9H165 835 aa9.92□□□□□ -0.82
BRCA1-210ENST00000471181 ITGAEP38570 1179 aa9.91□□□□□ -0.82
BRCA1-210ENST00000471181 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP9.91□□□□□ -0.82
BRCA1-210ENST00000471181 HNRNPUL2Q1KMD3 747 aaKnown RBP9.91□□□□□ -0.82
BRCA1-210ENST00000471181 TRIM41Q8WV44 630 aa9.88□□□□□ -0.83
BRCA1-210ENST00000471181 ZBTB47Q9UFB7 747 aaPredicted RBP9.88□□□□□ -0.83
BRCA1-210ENST00000471181 SLC24A1O60721 1099 aa9.86□□□□□ -0.83
BRCA1-210ENST00000471181 EIF5BO60841 1220 aaKnown RBP9.8□□□□□ -0.84
BRCA1-210ENST00000471181 BCANQ96GW7 911 aa9.78□□□□□ -0.84
BRCA1-210ENST00000471181 CANXP27824 592 aaKnown RBP9.72□□□□□ -0.85
BRCA1-210ENST00000471181 CDK11AQ9UQ88 783 aaPredicted RBP9.68□□□□□ -0.86
BRCA1-210ENST00000471181 HRCP23327 699 aa9.67□□□□□ -0.86
BRCA1-210ENST00000471181 ANP32BQ92688 251 aaKnown RBP9.67□□□□□ -0.86
BRCA1-210ENST00000471181 GLIPR1L2Q4G1C9 344 aa9.65□□□□□ -0.86
BRCA1-210ENST00000471181 NPM2Q86SE8 214 aaKnown RBP9.64□□□□□ -0.87
BRCA1-210ENST00000471181 CDK11BP21127 795 aaKnown RBP9.61□□□□□ -0.87
BRCA1-210ENST00000471181 TRIM26Q12899 539 aaPredicted RBP9.59□□□□□ -0.87
BRCA1-210ENST00000471181 ZNF326Q5BKZ1 582 aaKnown RBP9.58□□□□□ -0.88
BRCA1-210ENST00000471181 HSP90AA1P07900 732 aaKnown RBP9.58□□□□□ -0.88
BRCA1-210ENST00000471181 NEFMP07197 916 aa9.57□□□□□ -0.88
BRCA1-210ENST00000471181 ANP32AP39687 249 aaKnown RBP9.57□□□□□ -0.88
BRCA1-210ENST00000471181 TRIM52Q96A61 297 aa9.57□□□□□ -0.88
BRCA1-210ENST00000471181 ARXQ96QS3 562 aa9.55□□□□□ -0.88
BRCA1-210ENST00000471181 DIEXFQ68CQ4 756 aaKnown RBP9.54□□□□□ -0.88
BRCA1-210ENST00000471181 NEUROD1Q13562 356 aa9.53□□□□□ -0.88
BRCA1-210ENST00000471181 FAM50AQ14320 339 aaKnown RBP9.51□□□□□ -0.89
BRCA1-210ENST00000471181 ANP32CO43423 234 aa9.49□□□□□ -0.89
BRCA1-210ENST00000471181 GTF3C3Q9Y5Q9 886 aa9.48□□□□□ -0.89
BRCA1-210ENST00000471181 TULP1O00294 542 aaPredicted RBP9.45□□□□□ -0.9
BRCA1-210ENST00000471181 DCAF1Q9Y4B6 1507 aa9.44□□□□□ -0.9
BRCA1-210ENST00000471181 UPF2Q9HAU5 1272 aaKnown RBP9.42□□□□□ -0.9
BRCA1-210ENST00000471181 MYO15BQ96JP2 1530 aa9.41□□□□□ -0.9
BRCA1-210ENST00000471181 ZCCHC6Q5VYS8 1495 aaKnown RBP9.4□□□□□ -0.9
BRCA1-210ENST00000471181 NBR1Q14596 966 aa9.4□□□□□ -0.9
BRCA1-210ENST00000471181 PLPPR3Q6T4P5 718 aa9.38□□□□□ -0.91
BRCA1-210ENST00000471181 NCBP3Q53F19 620 aaKnown RBP9.38□□□□□ -0.91
BRCA1-210ENST00000471181 A0A0G2JS52 829 aa9.37□□□□□ -0.91
BRCA1-210ENST00000471181 TNNT2P45379 298 aaPredicted RBP9.35□□□□□ -0.91
BRCA1-210ENST00000471181 UNC13AQ9UPW8 1703 aa9.35□□□□□ -0.91
BRCA1-210ENST00000471181 AMER1Q5JTC6 1135 aaPredicted RBP9.33□□□□□ -0.92
BRCA1-210ENST00000471181 SCAF1Q9H7N4 1312 aaKnown RBP9.32□□□□□ -0.92
BRCA1-210ENST00000471181 LOC105371045A0A1W2PR82 267 aa9.3□□□□□ -0.92
BRCA1-210ENST00000471181 TPRNQ4KMQ1 711 aa9.3□□□□□ -0.92
BRCA1-210ENST00000471181 NCLP19338 710 aaKnown RBP9.27□□□□□ -0.93
BRCA1-210ENST00000471181 TRIM44Q96DX7 344 aaPredicted RBP9.27□□□□□ -0.93
BRCA1-210ENST00000471181 SALL2Q9Y467 1007 aaPredicted RBP9.27□□□□□ -0.93
BRCA1-210ENST00000471181 FKBP8Q14318 412 aa9.26□□□□□ -0.93
BRCA1-210ENST00000471181 PTMAP06454 111 aaKnown RBP9.26□□□□□ -0.93
BRCA1-210ENST00000471181 DNTTIP2Q5QJE6 756 aaKnown RBP9.25□□□□□ -0.93
BRCA1-210ENST00000471181 ESF1Q9H501 851 aaKnown RBP9.25□□□□□ -0.93
BRCA1-210ENST00000471181 STAG3Q9UJ98 1225 aa9.24□□□□□ -0.93
BRCA1-210ENST00000471181 ZRSR1Q15695 479 aaKnown RBP9.24□□□□□ -0.93
BRCA1-210ENST00000471181 CHGAP10645 457 aaKnown RBP9.24□□□□□ -0.93
BRCA1-210ENST00000471181 ZBTB7CA1YPR0 619 aa9.23□□□□□ -0.93
BRCA1-210ENST00000471181 PLEKHG5O94827 1062 aa9.23□□□□□ -0.93
BRCA1-210ENST00000471181 TAOK2Q9UL54 1235 aa9.23□□□□□ -0.93
BRCA1-210ENST00000471181 FBLN2P98095 1184 aa9.22□□□□□ -0.93
BRCA1-210ENST00000471181 GOLGA6L2Q8N9W4 650 aaPredicted RBP9.21□□□□□ -0.93
BRCA1-210ENST00000471181 MYH16Q9H6N6 1097 aa9.21□□□□□ -0.94
BRCA1-210ENST00000471181 ARID3CA6NKF2 412 aa9.21□□□□□ -0.94
BRCA1-210ENST00000471181 CLSTN1O94985 981 aa9.2□□□□□ -0.94
BRCA1-210ENST00000471181 FAM9BQ8IZU0 186 aa9.18□□□□□ -0.94
BRCA1-210ENST00000471181 NAP1L5Q96NT1 182 aaPredicted RBP9.18□□□□□ -0.94
BRCA1-210ENST00000471181 CCDC136Q96JN2 1154 aa9.17□□□□□ -0.94
BRCA1-210ENST00000471181 ZNF777Q9ULD5 760 aaPredicted RBP9.17□□□□□ -0.94
BRCA1-210ENST00000471181 PRM3Q9NNZ6 103 aa9.16□□□□□ -0.94
BRCA1-210ENST00000471181 GOLGA6L22H0YM25 854 aa9.15□□□□□ -0.94
BRCA1-210ENST00000471181 HNRNPUQ00839 825 aaKnown RBP eCLIP9.15□□□□□ -0.94
BRCA1-210ENST00000471181 PLCB2Q00722 1185 aa9.15□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms