RNA–Protein interactions for RNA: ENST00000469054.1

VPS13D-204, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 567 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-204ENST00000469054 ATOX1O00244 68 aa5.86□□□□□ -1.47
VPS13D-204ENST00000469054 SCGB1A1P11684 91 aa5.84□□□□□ -1.47
VPS13D-204ENST00000469054 LCE5AQ5TCM9 118 aa5.83□□□□□ -1.48
VPS13D-204ENST00000469054 MP68P56378 58 aa5.81□□□□□ -1.48
VPS13D-204ENST00000469054 C1orf64Q8NEQ6 169 aa5.81□□□□□ -1.48
VPS13D-204ENST00000469054 C5orf47Q569G3 176 aa5.8□□□□□ -1.48
VPS13D-204ENST00000469054 KRTAP9-8Q9BYQ0 159 aa5.8□□□□□ -1.48
VPS13D-204ENST00000469054 LINC00208Q96KT6 92 aa5.79□□□□□ -1.48
VPS13D-204ENST00000469054 KRTAP4-11Q9BYQ6 195 aa5.77□□□□□ -1.49
VPS13D-204ENST00000469054 FAM236AA0A1B0GUQ0 79 aa5.76□□□□□ -1.49
VPS13D-204ENST00000469054 FAM236BA0A1B0GV22 79 aa5.76□□□□□ -1.49
VPS13D-204ENST00000469054 KRTAP4-2Q9BYR5 136 aa5.76□□□□□ -1.49
VPS13D-204ENST00000469054 H3BPC8 53 aa5.75□□□□□ -1.49
VPS13D-204ENST00000469054 SMIM20Q8N5G0 67 aa5.73□□□□□ -1.49
VPS13D-204ENST00000469054 MT2AP02795 61 aa5.72□□□□□ -1.49
VPS13D-204ENST00000469054 KLKP1Q107X0 134 aa5.72□□□□□ -1.49
VPS13D-204ENST00000469054 TRAV7A0A075B6U4 112 aa5.71□□□□□ -1.5
VPS13D-204ENST00000469054 S4R3F8 94 aa5.71□□□□□ -1.5
VPS13D-204ENST00000469054 MT1FP04733 61 aa5.68□□□□□ -1.5
VPS13D-204ENST00000469054 LCA10Q71F78 164 aa5.68□□□□□ -1.5
VPS13D-204ENST00000469054 KRTAP10-10P60014 251 aa5.67□□□□□ -1.5
VPS13D-204ENST00000469054 A8MUN3 132 aa5.66□□□□□ -1.5
VPS13D-204ENST00000469054 CSAG1Q6PB30 78 aa5.65□□□□□ -1.5
VPS13D-204ENST00000469054 KRTAP23-1A1A580 65 aa5.62□□□□□ -1.51
VPS13D-204ENST00000469054 SERP2Q8N6R1 65 aa5.6□□□□□ -1.51
VPS13D-204ENST00000469054 NDUFC1O43677 76 aa5.57□□□□□ -1.52
VPS13D-204ENST00000469054 DMAC1Q96GE9 116 aa5.57□□□□□ -1.52
VPS13D-204ENST00000469054 SNURFQ9Y675 71 aa5.57□□□□□ -1.52
VPS13D-204ENST00000469054 C20orf197Q8N268 126 aa5.55□□□□□ -1.52
VPS13D-204ENST00000469054 CRCT1Q9UGL9 99 aa5.52□□□□□ -1.53
VPS13D-204ENST00000469054 FSIP2Q5CZC0 6907 aa5.52□□□□□ -1.53
VPS13D-204ENST00000469054 COX7CP15954 63 aa5.5□□□□□ -1.53
VPS13D-204ENST00000469054 ACYP2P14621 99 aa5.49□□□□□ -1.53
VPS13D-204ENST00000469054 SPANXA2-OT1Q8N9U9 137 aa5.47□□□□□ -1.53
VPS13D-204ENST00000469054 USH2AO75445 5202 aa5.47□□□□□ -1.53
VPS13D-204ENST00000469054 H0YAA0 97 aa5.46□□□□□ -1.54
VPS13D-204ENST00000469054 ANAPC13Q9BS18 74 aa5.42□□□□□ -1.54
VPS13D-204ENST00000469054 ADM2Q7Z4H4 148 aa5.41□□□□□ -1.54
VPS13D-204ENST00000469054 CHKB-CPT1BH3BT56 60 aa5.39□□□□□ -1.55
VPS13D-204ENST00000469054 SPRR2GQ9BYE4 73 aa5.39□□□□□ -1.55
VPS13D-204ENST00000469054 CRIPTQ9P021 101 aa5.39□□□□□ -1.55
VPS13D-204ENST00000469054 SSPOA2VEC9 5147 aa5.37□□□□□ -1.55
VPS13D-204ENST00000469054 SPTSSBQ8NFR3 76 aa5.37□□□□□ -1.55
VPS13D-204ENST00000469054 CYSTM1Q9H1C7 97 aa5.37□□□□□ -1.55
VPS13D-204ENST00000469054 H7BZZ5 65 aa5.36□□□□□ -1.55
VPS13D-204ENST00000469054 KRTAP15-1Q3LI76 137 aa5.34□□□□□ -1.55
VPS13D-204ENST00000469054 CCDC179H3BU77 68 aa5.31□□□□□ -1.56
VPS13D-204ENST00000469054 KRTAP19-8Q3LI54 63 aa5.31□□□□□ -1.56
VPS13D-204ENST00000469054 P0C880 135 aa5.3□□□□□ -1.56
VPS13D-204ENST00000469054 KRTAP19-6Q3LI70 58 aa5.3□□□□□ -1.56
VPS13D-204ENST00000469054 COA5Q86WW8 74 aa5.3□□□□□ -1.56
VPS13D-204ENST00000469054 Q5VV11 94 aa5.29□□□□□ -1.56
VPS13D-204ENST00000469054 MT1BP07438 61 aa5.28□□□□□ -1.56
VPS13D-204ENST00000469054 R4GN34 69 aa5.25□□□□□ -1.57
VPS13D-204ENST00000469054 M0QZ58 72 aa5.22□□□□□ -1.57
VPS13D-204ENST00000469054 FCGBPQ9Y6R7 5405 aaPredicted RBP5.21□□□□□ -1.58
VPS13D-204ENST00000469054 ATP5EP56381 51 aaPredicted RBP5.17□□□□□ -1.58
VPS13D-204ENST00000469054 A6NN06 94 aa5.14□□□□□ -1.59
VPS13D-204ENST00000469054 SEC61GP60059 68 aa5.12□□□□□ -1.59
VPS13D-204ENST00000469054 KRTAP10-5P60370 271 aa5.12□□□□□ -1.59
VPS13D-204ENST00000469054 TMEM258P61165 79 aa5.12□□□□□ -1.59
VPS13D-204ENST00000469054 LINC01554Q52M75 96 aa5.12□□□□□ -1.59
VPS13D-204ENST00000469054 PLAC4Q8WY50 150 aa5.12□□□□□ -1.59
VPS13D-204ENST00000469054 SERP1Q9Y6X1 66 aa5.12□□□□□ -1.59
VPS13D-204ENST00000469054 KRTAP13-4Q3LI77 160 aa5.05□□□□□ -1.6
VPS13D-204ENST00000469054 A0A1B0GU69 56 aa5.03□□□□□ -1.6
VPS13D-204ENST00000469054 A0A1B0GU33 70 aa5.02□□□□□ -1.61
VPS13D-204ENST00000469054 PRO2289Q9P1D8 64 aa5.02□□□□□ -1.61
VPS13D-204ENST00000469054 MT1XP80297 61 aa5.01□□□□□ -1.61
VPS13D-204ENST00000469054 MACF1Q9UPN3 7388 aaKnown RBP4.98□□□□□ -1.61
VPS13D-204ENST00000469054 SPATA8Q6RVD6 105 aa4.96□□□□□ -1.62
VPS13D-204ENST00000469054 LINC01558Q9Y6Z2 57 aa4.95□□□□□ -1.62
VPS13D-204ENST00000469054 PRR15LQ9BU68 103 aa4.94□□□□□ -1.62
VPS13D-204ENST00000469054 KRTAP5-3Q6L8H2 238 aa4.93□□□□□ -1.62
VPS13D-204ENST00000469054 SYNE2Q8WXH0 6885 aaKnown RBP4.92□□□□□ -1.62
VPS13D-204ENST00000469054 A0A0D9SG42 100 aa4.92□□□□□ -1.62
VPS13D-204ENST00000469054 PCP4P48539 62 aa4.91□□□□□ -1.62
VPS13D-204ENST00000469054 KRTAP6-3Q3LI67 103 aa4.88□□□□□ -1.63
VPS13D-204ENST00000469054 SMIM26A0A096LP01 95 aa4.87□□□□□ -1.63
VPS13D-204ENST00000469054 CAMK2N1Q7Z7J9 78 aa4.86□□□□□ -1.63
VPS13D-204ENST00000469054 KRTAP12-2P59991 146 aa4.85□□□□□ -1.63
VPS13D-204ENST00000469054 SPINT4Q6UDR6 99 aa4.84□□□□□ -1.63
VPS13D-204ENST00000469054 KRTAP12-1P59990 96 aa4.83□□□□□ -1.64
VPS13D-204ENST00000469054 A8MU10 97 aa4.82□□□□□ -1.64
VPS13D-204ENST00000469054 V9GYY9 64 aa4.81□□□□□ -1.64
VPS13D-204ENST00000469054 KRTAP10-7P60409 375 aaPredicted RBP4.79□□□□□ -1.64
VPS13D-204ENST00000469054 UQCR11O14957 56 aa4.78□□□□□ -1.64
VPS13D-204ENST00000469054 Q1T7F1 81 aa4.78□□□□□ -1.64
VPS13D-204ENST00000469054 KMT2DO14686 5537 aa4.77□□□□□ -1.65
VPS13D-204ENST00000469054 KRTAP10-12P60413 245 aa4.76□□□□□ -1.65
VPS13D-204ENST00000469054 KRTAP5-9P26371 169 aa4.75□□□□□ -1.65
VPS13D-204ENST00000469054 RPS28P62857 69 aaKnown RBP4.75□□□□□ -1.65
VPS13D-204ENST00000469054 PSPHP1O15172 72 aa4.74□□□□□ -1.65
VPS13D-204ENST00000469054 KRTAP8-1Q8IUC2 63 aa4.72□□□□□ -1.65
VPS13D-204ENST00000469054 MIR22HGQ0VDD5 57 aa4.7□□□□□ -1.66
VPS13D-204ENST00000469054 MUC12Q9UKN1 5478 aa4.69□□□□□ -1.66
VPS13D-204ENST00000469054 SPRR2FQ96RM1 72 aa4.66□□□□□ -1.66
VPS13D-204ENST00000469054 LCE1AQ5T7P2 110 aa4.63□□□□□ -1.67
VPS13D-204ENST00000469054 SVIPQ8NHG7 77 aa4.6□□□□□ -1.67
VPS13D-204ENST00000469054 C10orf95Q9H7T3 257 aa4.6□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms