RNA–Protein interactions for RNA: ENST00000465461.6

CUX1-207, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 502 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-207ENST00000465461 KRTAP4-2Q9BYR5 136 aa5.54□□□□□ -1.52
CUX1-207ENST00000465461 ATOX1O00244 68 aa5.53□□□□□ -1.52
CUX1-207ENST00000465461 SCGB1A1P11684 91 aa5.53□□□□□ -1.52
CUX1-207ENST00000465461 C5orf47Q569G3 176 aa5.53□□□□□ -1.52
CUX1-207ENST00000465461 LINC00208Q96KT6 92 aa5.53□□□□□ -1.52
CUX1-207ENST00000465461 S4R3F8 94 aa5.52□□□□□ -1.53
CUX1-207ENST00000465461 KLKP1Q107X0 134 aa5.51□□□□□ -1.53
CUX1-207ENST00000465461 KRTAP9-3Q9BYQ3 159 aa5.51□□□□□ -1.53
CUX1-207ENST00000465461 IMUPQ9GZP8 106 aa5.51□□□□□ -1.53
CUX1-207ENST00000465461 CRCT1Q9UGL9 99 aa5.51□□□□□ -1.53
CUX1-207ENST00000465461 LCA10Q71F78 164 aa5.5□□□□□ -1.53
CUX1-207ENST00000465461 FAM236AA0A1B0GUQ0 79 aa5.48□□□□□ -1.53
CUX1-207ENST00000465461 FAM236BA0A1B0GV22 79 aa5.48□□□□□ -1.53
CUX1-207ENST00000465461 MP68P56378 58 aa5.48□□□□□ -1.53
CUX1-207ENST00000465461 LCE4AQ5TA78 99 aa5.46□□□□□ -1.54
CUX1-207ENST00000465461 CSAG1Q6PB30 78 aa5.43□□□□□ -1.54
CUX1-207ENST00000465461 KRTAP4-11Q9BYQ6 195 aa5.42□□□□□ -1.54
CUX1-207ENST00000465461 H3BPC8 53 aa5.4□□□□□ -1.54
CUX1-207ENST00000465461 TRAV7A0A075B6U4 112 aa5.38□□□□□ -1.55
CUX1-207ENST00000465461 SMIM20Q8N5G0 67 aa5.38□□□□□ -1.55
CUX1-207ENST00000465461 USH2AO75445 5202 aa5.36□□□□□ -1.55
CUX1-207ENST00000465461 A8MUN3 132 aa5.35□□□□□ -1.55
CUX1-207ENST00000465461 NDUFC1O43677 76 aa5.33□□□□□ -1.56
CUX1-207ENST00000465461 KRTAP9-7A8MTY7 169 aa5.32□□□□□ -1.56
CUX1-207ENST00000465461 KRTAP19-4Q3LI73 84 aa5.32□□□□□ -1.56
CUX1-207ENST00000465461 SNURFQ9Y675 71 aa5.31□□□□□ -1.56
CUX1-207ENST00000465461 SERP2Q8N6R1 65 aa5.3□□□□□ -1.56
CUX1-207ENST00000465461 DMAC1Q96GE9 116 aa5.3□□□□□ -1.56
CUX1-207ENST00000465461 SSPOA2VEC9 5147 aa5.3□□□□□ -1.56
CUX1-207ENST00000465461 LCE5AQ5TCM9 118 aa5.27□□□□□ -1.57
CUX1-207ENST00000465461 C20orf197Q8N268 126 aa5.27□□□□□ -1.57
CUX1-207ENST00000465461 ADM2Q7Z4H4 148 aa5.24□□□□□ -1.57
CUX1-207ENST00000465461 SPRR2GQ9BYE4 73 aa5.22□□□□□ -1.57
CUX1-207ENST00000465461 COX7CP15954 63 aa5.21□□□□□ -1.58
CUX1-207ENST00000465461 H0YAA0 97 aa5.2□□□□□ -1.58
CUX1-207ENST00000465461 ACYP2P14621 99 aa5.2□□□□□ -1.58
CUX1-207ENST00000465461 KRTAP19-6Q3LI70 58 aa5.2□□□□□ -1.58
CUX1-207ENST00000465461 MT1BP07438 61 aa5.19□□□□□ -1.58
CUX1-207ENST00000465461 ANAPC13Q9BS18 74 aa5.19□□□□□ -1.58
CUX1-207ENST00000465461 KRTAP19-8Q3LI54 63 aa5.17□□□□□ -1.58
CUX1-207ENST00000465461 Q5VV11 94 aa5.16□□□□□ -1.58
CUX1-207ENST00000465461 CRIPTQ9P021 101 aa5.16□□□□□ -1.58
CUX1-207ENST00000465461 P0C880 135 aa5.15□□□□□ -1.59
CUX1-207ENST00000465461 FCGBPQ9Y6R7 5405 aaPredicted RBP5.13□□□□□ -1.59
CUX1-207ENST00000465461 SPANXA2-OT1Q8N9U9 137 aa5.13□□□□□ -1.59
CUX1-207ENST00000465461 CHKB-CPT1BH3BT56 60 aa5.12□□□□□ -1.59
CUX1-207ENST00000465461 CYSTM1Q9H1C7 97 aa5.12□□□□□ -1.59
CUX1-207ENST00000465461 CCDC179H3BU77 68 aa5.08□□□□□ -1.6
CUX1-207ENST00000465461 SPTSSBQ8NFR3 76 aa5.07□□□□□ -1.6
CUX1-207ENST00000465461 H7BZZ5 65 aa5.06□□□□□ -1.6
CUX1-207ENST00000465461 M0QZ58 72 aa5.05□□□□□ -1.6
CUX1-207ENST00000465461 R4GN34 69 aa5.05□□□□□ -1.6
CUX1-207ENST00000465461 A6NN06 94 aa5.04□□□□□ -1.6
CUX1-207ENST00000465461 COA5Q86WW8 74 aa5.02□□□□□ -1.61
CUX1-207ENST00000465461 MACF1Q9UPN3 7388 aaKnown RBP5.01□□□□□ -1.61
CUX1-207ENST00000465461 KRTAP10-5P60370 271 aa5□□□□□ -1.61
CUX1-207ENST00000465461 KRTAP5-3Q6L8H2 238 aa5□□□□□ -1.61
CUX1-207ENST00000465461 LINC01554Q52M75 96 aa4.99□□□□□ -1.61
CUX1-207ENST00000465461 SYNE2Q8WXH0 6885 aaKnown RBP4.96□□□□□ -1.62
CUX1-207ENST00000465461 PLAC4Q8WY50 150 aa4.95□□□□□ -1.62
CUX1-207ENST00000465461 H3BS24 57 aa4.9□□□□□ -1.63
CUX1-207ENST00000465461 MT1XP80297 61 aa4.9□□□□□ -1.63
CUX1-207ENST00000465461 ATP5EP56381 51 aaPredicted RBP4.89□□□□□ -1.63
CUX1-207ENST00000465461 KRTAP13-4Q3LI77 160 aa4.89□□□□□ -1.63
CUX1-207ENST00000465461 TMEM258P61165 79 aa4.86□□□□□ -1.63
CUX1-207ENST00000465461 SEC61GP60059 68 aa4.83□□□□□ -1.64
CUX1-207ENST00000465461 KRTAP6-3Q3LI67 103 aa4.83□□□□□ -1.64
CUX1-207ENST00000465461 PRO2289Q9P1D8 64 aa4.83□□□□□ -1.64
CUX1-207ENST00000465461 SERP1Q9Y6X1 66 aa4.83□□□□□ -1.64
CUX1-207ENST00000465461 SPATA8Q6RVD6 105 aa4.79□□□□□ -1.64
CUX1-207ENST00000465461 A0A0D9SG42 100 aa4.77□□□□□ -1.65
CUX1-207ENST00000465461 A0A1B0GU33 70 aa4.76□□□□□ -1.65
CUX1-207ENST00000465461 A0A1B0GU69 56 aa4.76□□□□□ -1.65
CUX1-207ENST00000465461 PCP4P48539 62 aa4.76□□□□□ -1.65
CUX1-207ENST00000465461 KRTAP10-7P60409 375 aaPredicted RBP4.71□□□□□ -1.66
CUX1-207ENST00000465461 KRTAP12-2P59991 146 aa4.68□□□□□ -1.66
CUX1-207ENST00000465461 SPINT4Q6UDR6 99 aa4.68□□□□□ -1.66
CUX1-207ENST00000465461 CAMK2N1Q7Z7J9 78 aa4.68□□□□□ -1.66
CUX1-207ENST00000465461 KRTAP5-9P26371 169 aa4.67□□□□□ -1.66
CUX1-207ENST00000465461 PRR15LQ9BU68 103 aa4.67□□□□□ -1.66
CUX1-207ENST00000465461 LINC01558Q9Y6Z2 57 aa4.67□□□□□ -1.66
CUX1-207ENST00000465461 KMT2DO14686 5537 aa4.65□□□□□ -1.66
CUX1-207ENST00000465461 A8MU10 97 aa4.65□□□□□ -1.67
CUX1-207ENST00000465461 KRTAP12-1P59990 96 aa4.64□□□□□ -1.67
CUX1-207ENST00000465461 KRTAP8-1Q8IUC2 63 aa4.64□□□□□ -1.67
CUX1-207ENST00000465461 KRTAP10-12P60413 245 aa4.63□□□□□ -1.67
CUX1-207ENST00000465461 SPRR2FQ96RM1 72 aa4.61□□□□□ -1.67
CUX1-207ENST00000465461 NEBP20929 6669 aa4.61□□□□□ -1.67
CUX1-207ENST00000465461 SMIM26A0A096LP01 95 aa4.6□□□□□ -1.67
CUX1-207ENST00000465461 MUC12Q9UKN1 5478 aa4.56□□□□□ -1.68
CUX1-207ENST00000465461 PSPHP1O15172 72 aa4.54□□□□□ -1.68
CUX1-207ENST00000465461 V9GYY9 64 aa4.54□□□□□ -1.68
CUX1-207ENST00000465461 UQCR11O14957 56 aa4.52□□□□□ -1.69
CUX1-207ENST00000465461 Q1T7F1 81 aa4.52□□□□□ -1.69
CUX1-207ENST00000465461 SPRR2EP22531 72 aa4.51□□□□□ -1.69
CUX1-207ENST00000465461 SPRR2BP35325 72 aa4.51□□□□□ -1.69
CUX1-207ENST00000465461 SPRR2AP35326 72 aa4.51□□□□□ -1.69
CUX1-207ENST00000465461 RPS28P62857 69 aaKnown RBP4.48□□□□□ -1.69
CUX1-207ENST00000465461 LCE1AQ5T7P2 110 aa4.46□□□□□ -1.7
CUX1-207ENST00000465461 MIR22HGQ0VDD5 57 aa4.45□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 92.7 ms