RNA–Protein interactions for RNA: ENST00000421141.5

PTCH1-206, Transcript of patched 1, humanhuman

TSL 5 BASIC

Gene PTCH1, Length 7,659 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-206ENST00000421141 KRTAP10-4P60372 401 aaPredicted RBP5.15□□□□□ -1.59
PTCH1-206ENST00000421141 FRAS1Q86XX4 4008 aa5.12□□□□□ -1.59
PTCH1-206ENST00000421141 FAT2Q9NYQ8 4349 aa5.05□□□□□ -1.6
PTCH1-206ENST00000421141 KRTAP12-2P59991 146 aa5.04□□□□□ -1.6
PTCH1-206ENST00000421141 KRTAP3-1Q9BYR8 98 aa5.03□□□□□ -1.6
PTCH1-206ENST00000421141 DNAH2Q9P225 4427 aa5.02□□□□□ -1.61
PTCH1-206ENST00000421141 KRTAP13-4Q3LI77 160 aa5.01□□□□□ -1.61
PTCH1-206ENST00000421141 VPS13DQ5THJ4 4388 aa4.97□□□□□ -1.61
PTCH1-206ENST00000421141 DNAH10Q8IVF4 4471 aa4.97□□□□□ -1.61
PTCH1-206ENST00000421141 KRTAP12-1P59990 96 aa4.96□□□□□ -1.62
PTCH1-206ENST00000421141 STARD9Q9P2P6 4700 aa4.96□□□□□ -1.62
PTCH1-206ENST00000421141 DYNC2H1Q8NCM8 4307 aaKnown RBP4.96□□□□□ -1.62
PTCH1-206ENST00000421141 PLECQ15149 4684 aaKnown RBP4.95□□□□□ -1.62
PTCH1-206ENST00000421141 KRTAP10-6P60371 365 aaPredicted RBP4.84□□□□□ -1.64
PTCH1-206ENST00000421141 KRTAP15-1Q3LI76 137 aa4.8□□□□□ -1.64
PTCH1-206ENST00000421141 DNAH17Q9UFH2 4485 aa4.79□□□□□ -1.64
PTCH1-206ENST00000421141 KRTAP10-12P60413 245 aa4.78□□□□□ -1.64
PTCH1-206ENST00000421141 KRTAP3-3Q9BYR6 98 aa4.78□□□□□ -1.64
PTCH1-206ENST00000421141 DNAH5Q8TE73 4624 aa4.78□□□□□ -1.64
PTCH1-206ENST00000421141 DNAH11Q96DT5 4516 aa4.77□□□□□ -1.65
PTCH1-206ENST00000421141 PKHD1P08F94 4074 aa4.76□□□□□ -1.65
PTCH1-206ENST00000421141 LRP1BQ9NZR2 4599 aa4.74□□□□□ -1.65
PTCH1-206ENST00000421141 KRTAP3-2Q9BYR7 98 aa4.68□□□□□ -1.66
PTCH1-206ENST00000421141 CRCT1Q9UGL9 99 aa4.66□□□□□ -1.66
PTCH1-206ENST00000421141 DNHD1Q96M86 4753 aa4.65□□□□□ -1.67
PTCH1-206ENST00000421141 MT1HP80294 61 aa4.64□□□□□ -1.67
PTCH1-206ENST00000421141 KRTAP8-1Q8IUC2 63 aa4.58□□□□□ -1.68
PTCH1-206ENST00000421141 KRTAP4-1Q9BYQ7 146 aa4.58□□□□□ -1.68
PTCH1-206ENST00000421141 DNAH8Q96JB1 4490 aa4.57□□□□□ -1.68
PTCH1-206ENST00000421141 KRTAP12-3P60328 96 aa4.53□□□□□ -1.68
PTCH1-206ENST00000421141 PKHD1L1Q86WI1 4243 aa4.53□□□□□ -1.68
PTCH1-206ENST00000421141 HSPG2P98160 4391 aa4.52□□□□□ -1.69
PTCH1-206ENST00000421141 KRTAP23-1A1A580 65 aa4.51□□□□□ -1.69
PTCH1-206ENST00000421141 LORP23490 312 aaPredicted RBP4.5□□□□□ -1.69
PTCH1-206ENST00000421141 DYNC1H1Q14204 4646 aaKnown RBP4.49□□□□□ -1.69
PTCH1-206ENST00000421141 PKD1P98161 4303 aa4.46□□□□□ -1.7
PTCH1-206ENST00000421141 LCE3AQ5TA76 89 aa4.45□□□□□ -1.7
PTCH1-206ENST00000421141 FAT1Q14517 4588 aa4.45□□□□□ -1.7
PTCH1-206ENST00000421141 MT2AP02795 61 aa4.45□□□□□ -1.7
PTCH1-206ENST00000421141 SPRR2GQ9BYE4 73 aa4.43□□□□□ -1.7
PTCH1-206ENST00000421141 TNXBP22105 4242 aa4.41□□□□□ -1.7
PTCH1-206ENST00000421141 SACSQ9NZJ4 4579 aa4.4□□□□□ -1.7
PTCH1-206ENST00000421141 MT1FP04733 61 aa4.35□□□□□ -1.71
PTCH1-206ENST00000421141 APOBP04114 4563 aaKnown RBP4.33□□□□□ -1.72
PTCH1-206ENST00000421141 FLGP20930 4061 aaPredicted RBP4.32□□□□□ -1.72
PTCH1-206ENST00000421141 KRTAP17-1Q9BYP8 105 aa4.32□□□□□ -1.72
PTCH1-206ENST00000421141 SPRR2FQ96RM1 72 aa4.3□□□□□ -1.72
PTCH1-206ENST00000421141 FAT3Q8TDW7 4589 aa4.29□□□□□ -1.72
PTCH1-206ENST00000421141 LRP1Q07954 4544 aaKnown RBP4.28□□□□□ -1.72
PTCH1-206ENST00000421141 KRTAP10-7P60409 375 aaPredicted RBP4.22□□□□□ -1.73
PTCH1-206ENST00000421141 RYR1P21817 5038 aa4.21□□□□□ -1.74
PTCH1-206ENST00000421141 MYCBP2O75592 4640 aa4.18□□□□□ -1.74
PTCH1-206ENST00000421141 INE1O15225 51 aa4.16□□□□□ -1.74
PTCH1-206ENST00000421141 RYR3Q15413 4870 aa4.15□□□□□ -1.75
PTCH1-206ENST00000421141 LPAP08519 4548 aa4.14□□□□□ -1.75
PTCH1-206ENST00000421141 HYDINQ4G0P3 5121 aa4.12□□□□□ -1.75
PTCH1-206ENST00000421141 KRTAP10-5P60370 271 aa4.12□□□□□ -1.75
PTCH1-206ENST00000421141 SPRR2EP22531 72 aa4.12□□□□□ -1.75
PTCH1-206ENST00000421141 SPRR2BP35325 72 aa4.12□□□□□ -1.75
PTCH1-206ENST00000421141 SPRR2AP35326 72 aa4.12□□□□□ -1.75
PTCH1-206ENST00000421141 KRTAP19-5Q3LI72 72 aa4.11□□□□□ -1.75
PTCH1-206ENST00000421141 KRTAP19-8Q3LI54 63 aa4.1□□□□□ -1.75
PTCH1-206ENST00000421141 KRTAP9-8Q9BYQ0 159 aa4.08□□□□□ -1.76
PTCH1-206ENST00000421141 KRTAP19-4Q3LI73 84 aa4.06□□□□□ -1.76
PTCH1-206ENST00000421141 KRTAP19-1Q8IUB9 90 aa4.05□□□□□ -1.76
PTCH1-206ENST00000421141 LCE2CQ5TA81 110 aa4□□□□□ -1.77
PTCH1-206ENST00000421141 SPRR2DP22532 72 aa4□□□□□ -1.77
PTCH1-206ENST00000421141 LCE3CQ5T5A8 94 aa4□□□□□ -1.77
PTCH1-206ENST00000421141 LCE2BO14633 110 aa3.98□□□□□ -1.77
PTCH1-206ENST00000421141 LRP2P98164 4655 aa3.97□□□□□ -1.77
PTCH1-206ENST00000421141 KRTAP9-3Q9BYQ3 159 aa3.97□□□□□ -1.77
PTCH1-206ENST00000421141 MT1XP80297 61 aa3.95□□□□□ -1.78
PTCH1-206ENST00000421141 KRTAP9-2Q9BYQ4 174 aa3.93□□□□□ -1.78
PTCH1-206ENST00000421141 RYR2Q92736 4967 aa3.91□□□□□ -1.78
PTCH1-206ENST00000421141 KMT2CQ8NEZ4 4911 aaKnown RBP3.91□□□□□ -1.78
PTCH1-206ENST00000421141 MT1BP07438 61 aa3.91□□□□□ -1.78
PTCH1-206ENST00000421141 HERC2O95714 4834 aa3.87□□□□□ -1.79
PTCH1-206ENST00000421141 MUC17Q685J3 4493 aa3.87□□□□□ -1.79
PTCH1-206ENST00000421141 KRTAP12-4P60329 112 aa3.82□□□□□ -1.8
PTCH1-206ENST00000421141 KIAA1109Q2LD37 5005 aa3.82□□□□□ -1.8
PTCH1-206ENST00000421141 KRTAP19-2Q3LHN2 52 aa3.8□□□□□ -1.8
PTCH1-206ENST00000421141 LCE2DQ5TA82 110 aaPredicted RBP3.79□□□□□ -1.8
PTCH1-206ENST00000421141 MT1GP13640 62 aa3.79□□□□□ -1.8
PTCH1-206ENST00000421141 KRTAP4-8A0A0G2JLE6 195 aa3.75□□□□□ -1.81
PTCH1-206ENST00000421141 KRTAP4-8Q9BYQ9 185 aa3.75□□□□□ -1.81
PTCH1-206ENST00000421141 KRTAP9-6A0A140TA67 174 aa3.75□□□□□ -1.81
PTCH1-206ENST00000421141 BIRC6Q9NR09 4857 aa3.74□□□□□ -1.81
PTCH1-206ENST00000421141 KRTAP19-6Q3LI70 58 aa3.73□□□□□ -1.81
PTCH1-206ENST00000421141 PCLOQ9Y6V0 5065 aa3.7□□□□□ -1.82
PTCH1-206ENST00000421141 LCE2AQ5TA79 106 aaPredicted RBP3.69□□□□□ -1.82
PTCH1-206ENST00000421141 LCE3BQ5TA77 95 aa3.68□□□□□ -1.82
PTCH1-206ENST00000421141 KRTAP19-3Q7Z4W3 81 aa3.68□□□□□ -1.82
PTCH1-206ENST00000421141 HERC1Q15751 4861 aa3.6□□□□□ -1.83
PTCH1-206ENST00000421141 MT1EP04732 61 aa3.57□□□□□ -1.84
PTCH1-206ENST00000421141 MT1LQ93083 61 aa3.55□□□□□ -1.84
PTCH1-206ENST00000421141 MT4P47944 62 aa3.5□□□□□ -1.85
PTCH1-206ENST00000421141 KRTAP9-7A8MTY7 169 aa3.5□□□□□ -1.85
PTCH1-206ENST00000421141 EPPK1P58107 5090 aaKnown RBP3.48□□□□□ -1.85
PTCH1-206ENST00000421141 KRTAP20-1Q3LI63 56 aa3.47□□□□□ -1.85
PTCH1-206ENST00000421141 MT1MQ8N339 61 aa3.46□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 92.2 ms