RNA–Protein interactions for RNA: ENST00000414786.6

SHANK3-202, Transcript of SH3 and multiple ankyrin repeat domains 3, humanhuman

TSL 5

Gene SHANK3, Length 7,394 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3-202ENST00000414786 ANK3Q12955 4377 aaKnown RBP7.64□□□□□ -1.19
SHANK3-202ENST00000414786 SPRR2FQ96RM1 72 aa7.64□□□□□ -1.19
SHANK3-202ENST00000414786 HUWE1Q7Z6Z7 4374 aaKnown RBP7.53□□□□□ -1.2
SHANK3-202ENST00000414786 KRTAP10-7P60409 375 aaPredicted RBP7.5□□□□□ -1.21
SHANK3-202ENST00000414786 ZNF469Q96JG9 3925 aaPredicted RBP7.39□□□□□ -1.23
SHANK3-202ENST00000414786 AKAP9Q99996 3911 aa7.38□□□□□ -1.23
SHANK3-202ENST00000414786 ALMS1Q8TCU4 4167 aa7.32□□□□□ -1.24
SHANK3-202ENST00000414786 KRTAP23-1A1A580 65 aa7.3□□□□□ -1.24
SHANK3-202ENST00000414786 KRTAP10-4P60372 401 aaPredicted RBP7.29□□□□□ -1.24
SHANK3-202ENST00000414786 MT1HP80294 61 aa7.27□□□□□ -1.25
SHANK3-202ENST00000414786 SPRR2EP22531 72 aa7.26□□□□□ -1.25
SHANK3-202ENST00000414786 SPRR2BP35325 72 aa7.26□□□□□ -1.25
SHANK3-202ENST00000414786 SPRR2AP35326 72 aa7.26□□□□□ -1.25
SHANK3-202ENST00000414786 KRTAP19-5Q3LI72 72 aa7.24□□□□□ -1.25
SHANK3-202ENST00000414786 KRTAP4-1Q9BYQ7 146 aa7.2□□□□□ -1.26
SHANK3-202ENST00000414786 LCE3BQ5TA77 95 aa7.15□□□□□ -1.27
SHANK3-202ENST00000414786 MT2AP02795 61 aa7.06□□□□□ -1.28
SHANK3-202ENST00000414786 DNAH2Q9P225 4427 aa6.99□□□□□ -1.29
SHANK3-202ENST00000414786 SPRR2DP22532 72 aa6.98□□□□□ -1.29
SHANK3-202ENST00000414786 MT1FP04733 61 aa6.96□□□□□ -1.29
SHANK3-202ENST00000414786 LCE3CQ5T5A8 94 aa6.95□□□□□ -1.3
SHANK3-202ENST00000414786 MT1GP13640 62 aa6.85□□□□□ -1.31
SHANK3-202ENST00000414786 DNAH1Q9P2D7 4330 aa6.8□□□□□ -1.32
SHANK3-202ENST00000414786 LCE2BO14633 110 aa6.78□□□□□ -1.32
SHANK3-202ENST00000414786 FRAS1Q86XX4 4008 aa6.78□□□□□ -1.32
SHANK3-202ENST00000414786 DNAH9Q9NYC9 4486 aa6.74□□□□□ -1.33
SHANK3-202ENST00000414786 ANK2Q01484 3957 aa6.72□□□□□ -1.33
SHANK3-202ENST00000414786 SPRR2GQ9BYE4 73 aa6.71□□□□□ -1.34
SHANK3-202ENST00000414786 DNAH10Q8IVF4 4471 aa6.69□□□□□ -1.34
SHANK3-202ENST00000414786 VPS13BQ7Z7G8 4022 aa6.68□□□□□ -1.34
SHANK3-202ENST00000414786 DNAH8Q96JB1 4490 aa6.66□□□□□ -1.34
SHANK3-202ENST00000414786 KRTAP12-4P60329 112 aa6.65□□□□□ -1.35
SHANK3-202ENST00000414786 KMT2AQ03164 3969 aa6.62□□□□□ -1.35
SHANK3-202ENST00000414786 DNAH5Q8TE73 4624 aa6.61□□□□□ -1.35
SHANK3-202ENST00000414786 SPRR5A0A1B0GTR4 108 aa6.58□□□□□ -1.36
SHANK3-202ENST00000414786 LYSTQ99698 3801 aa6.57□□□□□ -1.36
SHANK3-202ENST00000414786 DNAH3Q8TD57 4116 aa6.56□□□□□ -1.36
SHANK3-202ENST00000414786 FAT1Q14517 4588 aa6.54□□□□□ -1.36
SHANK3-202ENST00000414786 DNAH17Q9UFH2 4485 aa6.54□□□□□ -1.36
SHANK3-202ENST00000414786 KRTAP4-8A0A0G2JLE6 195 aa6.5□□□□□ -1.37
SHANK3-202ENST00000414786 KRTAP4-8Q9BYQ9 185 aa6.5□□□□□ -1.37
SHANK3-202ENST00000414786 LCE2CQ5TA81 110 aa6.5□□□□□ -1.37
SHANK3-202ENST00000414786 FAT2Q9NYQ8 4349 aa6.5□□□□□ -1.37
SHANK3-202ENST00000414786 MT4P47944 62 aa6.49□□□□□ -1.37
SHANK3-202ENST00000414786 CMYA5Q8N3K9 4069 aa6.47□□□□□ -1.37
SHANK3-202ENST00000414786 PLECQ15149 4684 aaKnown RBP6.46□□□□□ -1.38
SHANK3-202ENST00000414786 LCE2DQ5TA82 110 aaPredicted RBP6.45□□□□□ -1.38
SHANK3-202ENST00000414786 DNAH11Q96DT5 4516 aa6.42□□□□□ -1.38
SHANK3-202ENST00000414786 LCE3DQ9BYE3 92 aa6.36□□□□□ -1.39
SHANK3-202ENST00000414786 DNAH7Q8WXX0 4024 aa6.34□□□□□ -1.39
SHANK3-202ENST00000414786 KRTAP19-1Q8IUB9 90 aa6.33□□□□□ -1.4
SHANK3-202ENST00000414786 LCE3EQ5T5B0 92 aa6.29□□□□□ -1.4
SHANK3-202ENST00000414786 LCE1BQ5T7P3 118 aa6.28□□□□□ -1.4
SHANK3-202ENST00000414786 LRP1BQ9NZR2 4599 aa6.28□□□□□ -1.4
SHANK3-202ENST00000414786 PRKDCP78527 4128 aaKnown RBP6.26□□□□□ -1.41
SHANK3-202ENST00000414786 MT1XP80297 61 aa6.21□□□□□ -1.41
SHANK3-202ENST00000414786 KRTAP4-7Q9BYR0 210 aa6.2□□□□□ -1.42
SHANK3-202ENST00000414786 DYNC2H1Q8NCM8 4307 aaKnown RBP6.18□□□□□ -1.42
SHANK3-202ENST00000414786 SACSQ9NZJ4 4579 aa6.18□□□□□ -1.42
SHANK3-202ENST00000414786 DNAH6Q9C0G6 4158 aa6.18□□□□□ -1.42
SHANK3-202ENST00000414786 STARD9Q9P2P6 4700 aa6.16□□□□□ -1.42
SHANK3-202ENST00000414786 LCE1DQ5T752 114 aa6.15□□□□□ -1.42
SHANK3-202ENST00000414786 APOBP04114 4563 aaKnown RBP6.14□□□□□ -1.43
SHANK3-202ENST00000414786 VPS13DQ5THJ4 4388 aa6.13□□□□□ -1.43
SHANK3-202ENST00000414786 HECTD4Q9Y4D8 3996 aa6.11□□□□□ -1.43
SHANK3-202ENST00000414786 KRTAP17-1Q9BYP8 105 aa6.07□□□□□ -1.44
SHANK3-202ENST00000414786 MT1BP07438 61 aa6.01□□□□□ -1.45
SHANK3-202ENST00000414786 RYR1P21817 5038 aa6□□□□□ -1.45
SHANK3-202ENST00000414786 DYNC1H1Q14204 4646 aaKnown RBP6□□□□□ -1.45
SHANK3-202ENST00000414786 KRTAP19-8Q3LI54 63 aa5.99□□□□□ -1.45
SHANK3-202ENST00000414786 KRTAP19-4Q3LI73 84 aa5.99□□□□□ -1.45
SHANK3-202ENST00000414786 LOC100996750A0A140TA64 210 aa5.96□□□□□ -1.46
SHANK3-202ENST00000414786 PRM1P04553 51 aa5.95□□□□□ -1.46
SHANK3-202ENST00000414786 FAT3Q8TDW7 4589 aa5.92□□□□□ -1.46
SHANK3-202ENST00000414786 KRTAP9-8Q9BYQ0 159 aa5.92□□□□□ -1.46
SHANK3-202ENST00000414786 LCE5AQ5TCM9 118 aa5.9□□□□□ -1.46
SHANK3-202ENST00000414786 LPAP08519 4548 aa5.9□□□□□ -1.46
SHANK3-202ENST00000414786 KRTAP19-3Q7Z4W3 81 aa5.9□□□□□ -1.47
SHANK3-202ENST00000414786 MYCBP2O75592 4640 aa5.86□□□□□ -1.47
SHANK3-202ENST00000414786 KRTAP4-3Q9BYR4 195 aa5.84□□□□□ -1.47
SHANK3-202ENST00000414786 DNHD1Q96M86 4753 aa5.83□□□□□ -1.48
SHANK3-202ENST00000414786 LRP1Q07954 4544 aaKnown RBP5.82□□□□□ -1.48
SHANK3-202ENST00000414786 KRTAP9-3Q9BYQ3 159 aa5.8□□□□□ -1.48
SHANK3-202ENST00000414786 KRTAP9-2Q9BYQ4 174 aa5.79□□□□□ -1.48
SHANK3-202ENST00000414786 PKD1P98161 4303 aa5.74□□□□□ -1.49
SHANK3-202ENST00000414786 MT3P25713 68 aa5.74□□□□□ -1.49
SHANK3-202ENST00000414786 PKHD1P08F94 4074 aa5.72□□□□□ -1.49
SHANK3-202ENST00000414786 MT1LQ93083 61 aa5.7□□□□□ -1.5
SHANK3-202ENST00000414786 FLGP20930 4061 aaPredicted RBP5.68□□□□□ -1.5
SHANK3-202ENST00000414786 KRTAP4-9Q9BYQ8 210 aa5.66□□□□□ -1.5
SHANK3-202ENST00000414786 PKHD1L1Q86WI1 4243 aa5.64□□□□□ -1.51
SHANK3-202ENST00000414786 LCE1CQ5T751 118 aa5.63□□□□□ -1.51
SHANK3-202ENST00000414786 LCE1EQ5T753 118 aa5.63□□□□□ -1.51
SHANK3-202ENST00000414786 LCE1FQ5T754 118 aa5.63□□□□□ -1.51
SHANK3-202ENST00000414786 LCE1AQ5T7P2 110 aa5.63□□□□□ -1.51
SHANK3-202ENST00000414786 MT1EP04732 61 aa5.63□□□□□ -1.51
SHANK3-202ENST00000414786 KRTAP19-6Q3LI70 58 aa5.62□□□□□ -1.51
SHANK3-202ENST00000414786 RYR3Q15413 4870 aa5.57□□□□□ -1.52
SHANK3-202ENST00000414786 SYNE2Q8WXH0 6885 aaKnown RBP5.57□□□□□ -1.52
SHANK3-202ENST00000414786 MT1MQ8N339 61 aa5.57□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 76.6 ms