RNA–Protein interactions for RNA: ENST00000414174.1

SF3B1-203, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 4

Gene SF3B1, Length 593 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-203ENST00000414174 CCDC168Q8NDH2 2452 aa1.28□□□□□ -2.2
SF3B1-203ENST00000414174 APCP25054 2843 aa1.28□□□□□ -2.2
SF3B1-203ENST00000414174 BOD1L1Q8NFC6 3051 aa1.27□□□□□ -2.21
SF3B1-203ENST00000414174 LRBAP50851 2863 aa1.27□□□□□ -2.21
SF3B1-203ENST00000414174 RP1L1Q8IWN7 2480 aaPredicted RBP1.27□□□□□ -2.21
SF3B1-203ENST00000414174 DEFB133Q30KQ1 61 aa1.27□□□□□ -2.21
SF3B1-203ENST00000414174 PRRC2CQ9Y520 2896 aaKnown RBP1.27□□□□□ -2.21
SF3B1-203ENST00000414174 CSMD2Q7Z408 3487 aa1.26□□□□□ -2.21
SF3B1-203ENST00000414174 STAB1Q9NY15 2570 aa1.26□□□□□ -2.21
SF3B1-203ENST00000414174 ACANP16112 2415 aa1.26□□□□□ -2.21
SF3B1-203ENST00000414174 COL6A5A8TX70 2615 aa1.25□□□□□ -2.21
SF3B1-203ENST00000414174 ATRQ13535 2644 aa1.25□□□□□ -2.21
SF3B1-203ENST00000414174 TNP1P09430 55 aa1.25□□□□□ -2.21
SF3B1-203ENST00000414174 CELSR1Q9NYQ6 3014 aa1.25□□□□□ -2.21
SF3B1-203ENST00000414174 AKAP9Q99996 3911 aa1.25□□□□□ -2.21
SF3B1-203ENST00000414174 ZNF469Q96JG9 3925 aaPredicted RBP1.24□□□□□ -2.21
SF3B1-203ENST00000414174 NSD1Q96L73 2696 aaPredicted RBP1.24□□□□□ -2.21
SF3B1-203ENST00000414174 NIPBLQ6KC79 2804 aaeCLIP1.24□□□□□ -2.21
SF3B1-203ENST00000414174 NBEAL1Q6ZS30 2694 aa1.24□□□□□ -2.21
SF3B1-203ENST00000414174 CRYBG3Q68DQ2 2970 aa1.24□□□□□ -2.21
SF3B1-203ENST00000414174 CENPEQ02224 2701 aa1.24□□□□□ -2.21
SF3B1-203ENST00000414174 H3BNG1 76 aa1.23□□□□□ -2.21
SF3B1-203ENST00000414174 KRTAP10-4P60372 401 aaPredicted RBP1.23□□□□□ -2.21
SF3B1-203ENST00000414174 SMR3AQ99954 134 aa1.23□□□□□ -2.21
SF3B1-203ENST00000414174 DMBT1Q9UGM3 2413 aaPredicted RBP1.23□□□□□ -2.21
SF3B1-203ENST00000414174 SPART-AS1P0CW21 52 aa1.22□□□□□ -2.21
SF3B1-203ENST00000414174 DEFB135Q30KP9 77 aa1.22□□□□□ -2.21
SF3B1-203ENST00000414174 LINC01556Q5JQF7 62 aa1.22□□□□□ -2.21
SF3B1-203ENST00000414174 UTP20O75691 2785 aaKnown RBP1.21□□□□□ -2.22
SF3B1-203ENST00000414174 VPS13DQ5THJ4 4388 aa1.21□□□□□ -2.22
SF3B1-203ENST00000414174 A0A096LPF7 62 aa1.21□□□□□ -2.22
SF3B1-203ENST00000414174 KRTAP2-3P0C7H8 128 aa1.21□□□□□ -2.22
SF3B1-203ENST00000414174 KRTAP12-3P60328 96 aa1.21□□□□□ -2.22
SF3B1-203ENST00000414174 KRTAP2-4Q9BYR9 128 aa1.21□□□□□ -2.22
SF3B1-203ENST00000414174 KRTAP2-1Q9BYU5 128 aa1.21□□□□□ -2.22
SF3B1-203ENST00000414174 VWFP04275 2813 aa1.21□□□□□ -2.22
SF3B1-203ENST00000414174 SRRM2Q9UQ35 2752 aaKnown RBP1.2□□□□□ -2.22
SF3B1-203ENST00000414174 FLNAP21333 2647 aaKnown RBP1.2□□□□□ -2.22
SF3B1-203ENST00000414174 SONP18583 2426 aaKnown RBP1.2□□□□□ -2.22
SF3B1-203ENST00000414174 BIRC6Q9NR09 4857 aa1.2□□□□□ -2.22
SF3B1-203ENST00000414174 C9orf92A6NGG3 77 aa1.19□□□□□ -2.22
SF3B1-203ENST00000414174 CUBNO60494 3623 aa1.19□□□□□ -2.22
SF3B1-203ENST00000414174 NOTCH1P46531 2555 aa1.19□□□□□ -2.22
SF3B1-203ENST00000414174 MXRA5Q9NR99 2828 aa1.19□□□□□ -2.22
SF3B1-203ENST00000414174 TLN2Q9Y4G6 2542 aa1.19□□□□□ -2.22
SF3B1-203ENST00000414174 DCHS2Q6V1P9 2916 aa1.19□□□□□ -2.22
SF3B1-203ENST00000414174 MGAM2Q2M2H8 2515 aa1.18□□□□□ -2.22
SF3B1-203ENST00000414174 ANK2Q01484 3957 aa1.18□□□□□ -2.22
SF3B1-203ENST00000414174 KMT2CQ8NEZ4 4911 aaKnown RBP1.18□□□□□ -2.22
SF3B1-203ENST00000414174 TACC2O95359 2948 aa1.18□□□□□ -2.22
SF3B1-203ENST00000414174 M0R2T5 61 aa1.17□□□□□ -2.22
SF3B1-203ENST00000414174 PKD1L1Q8TDX9 2849 aa1.17□□□□□ -2.22
SF3B1-203ENST00000414174 MYCBP2O75592 4640 aa1.17□□□□□ -2.22
SF3B1-203ENST00000414174 RYR3Q15413 4870 aa1.16□□□□□ -2.22
SF3B1-203ENST00000414174 DNAH11Q96DT5 4516 aa1.16□□□□□ -2.22
SF3B1-203ENST00000414174 SVEP1Q4LDE5 3571 aa1.15□□□□□ -2.23
SF3B1-203ENST00000414174 VPS13CQ709C8 3753 aa1.14□□□□□ -2.23
SF3B1-203ENST00000414174 RPS29P62273 56 aaKnown RBP1.14□□□□□ -2.23
SF3B1-203ENST00000414174 CRCT1Q9UGL9 99 aa1.14□□□□□ -2.23
SF3B1-203ENST00000414174 TGP01266 2768 aa1.14□□□□□ -2.23
SF3B1-203ENST00000414174 TRRAPQ9Y4A5 3859 aa1.14□□□□□ -2.23
SF3B1-203ENST00000414174 ANK3Q12955 4377 aaKnown RBP1.13□□□□□ -2.23
SF3B1-203ENST00000414174 NBEAL2Q6ZNJ1 2754 aa1.13□□□□□ -2.23
SF3B1-203ENST00000414174 KRTAP4-1Q9BYQ7 146 aa1.13□□□□□ -2.23
SF3B1-203ENST00000414174 MAP1AP78559 2803 aaPredicted RBP1.12□□□□□ -2.23
SF3B1-203ENST00000414174 ZANQ9Y493 2812 aa1.12□□□□□ -2.23
SF3B1-203ENST00000414174 EPPK1P58107 5090 aaKnown RBP1.12□□□□□ -2.23
SF3B1-203ENST00000414174 PRKDCP78527 4128 aaKnown RBP1.12□□□□□ -2.23
SF3B1-203ENST00000414174 HERC2O95714 4834 aa1.12□□□□□ -2.23
SF3B1-203ENST00000414174 KRTAP8-1Q8IUC2 63 aa1.11□□□□□ -2.23
SF3B1-203ENST00000414174 HRNRQ86YZ3 2850 aaPredicted RBP1.1□□□□□ -2.23
SF3B1-203ENST00000414174 CSMD3Q7Z407 3707 aa1.1□□□□□ -2.23
SF3B1-203ENST00000414174 HYDINQ4G0P3 5121 aa1.1□□□□□ -2.23
SF3B1-203ENST00000414174 RYR2Q92736 4967 aa1.09□□□□□ -2.23
SF3B1-203ENST00000414174 TENM3Q9P273 2699 aa1.08□□□□□ -2.24
SF3B1-203ENST00000414174 TENM1Q9UKZ4 2725 aa1.08□□□□□ -2.24
SF3B1-203ENST00000414174 PCLOQ9Y6V0 5065 aa1.08□□□□□ -2.24
SF3B1-203ENST00000414174 SACSQ9NZJ4 4579 aa1.06□□□□□ -2.24
SF3B1-203ENST00000414174 DNAH1Q9P2D7 4330 aa1.06□□□□□ -2.24
SF3B1-203ENST00000414174 RYR1P21817 5038 aa1.05□□□□□ -2.24
SF3B1-203ENST00000414174 DNAH8Q96JB1 4490 aa1.04□□□□□ -2.24
SF3B1-203ENST00000414174 KIAA1109Q2LD37 5005 aa1.04□□□□□ -2.24
SF3B1-203ENST00000414174 DYNC2H1Q8NCM8 4307 aaKnown RBP1.03□□□□□ -2.24
SF3B1-203ENST00000414174 COL7A1Q02388 2944 aa1.03□□□□□ -2.24
SF3B1-203ENST00000414174 LYSTQ99698 3801 aa1.03□□□□□ -2.24
SF3B1-203ENST00000414174 KMT2AQ03164 3969 aa1.02□□□□□ -2.25
SF3B1-203ENST00000414174 PRM1P04553 51 aa1.02□□□□□ -2.25
SF3B1-203ENST00000414174 HTN3P15516 51 aa1.02□□□□□ -2.25
SF3B1-203ENST00000414174 CMYA5Q8N3K9 4069 aa1.02□□□□□ -2.25
SF3B1-203ENST00000414174 STAB2Q8WWQ8 2551 aa1.02□□□□□ -2.25
SF3B1-203ENST00000414174 DNAH9Q9NYC9 4486 aa1.02□□□□□ -2.25
SF3B1-203ENST00000414174 DNAH3Q8TD57 4116 aa1.02□□□□□ -2.25
SF3B1-203ENST00000414174 UBR4Q5T4S7 5183 aa1.02□□□□□ -2.25
SF3B1-203ENST00000414174 STARD9Q9P2P6 4700 aa1.01□□□□□ -2.25
SF3B1-203ENST00000414174 ABCA13Q86UQ4 5058 aa1.01□□□□□ -2.25
SF3B1-203ENST00000414174 FCGBPQ9Y6R7 5405 aaPredicted RBP1□□□□□ -2.25
SF3B1-203ENST00000414174 VPS13BQ7Z7G8 4022 aa1□□□□□ -2.25
SF3B1-203ENST00000414174 TNXBP22105 4242 aa1□□□□□ -2.25
SF3B1-203ENST00000414174 HERC1Q15751 4861 aa0.99□□□□□ -2.25
SF3B1-203ENST00000414174 DNAH7Q8WXX0 4024 aa0.99□□□□□ -2.25
Retrieved 100 of 20,778 RNA–protein pairs in 7.4 ms