RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 DNAH7Q8WXX0 4024 aa5.67□□□□□ -1.5
CCDC88A-204ENST00000413716 KRTAP3-3Q9BYR6 98 aa5.63□□□□□ -1.51
CCDC88A-204ENST00000413716 HECTD4Q9Y4D8 3996 aa5.63□□□□□ -1.51
CCDC88A-204ENST00000413716 KRTAP8-1Q8IUC2 63 aa5.61□□□□□ -1.51
CCDC88A-204ENST00000413716 ALMS1Q8TCU4 4167 aa5.57□□□□□ -1.52
CCDC88A-204ENST00000413716 DNAH3Q8TD57 4116 aa5.47□□□□□ -1.53
CCDC88A-204ENST00000413716 KMT2AQ03164 3969 aa5.46□□□□□ -1.54
CCDC88A-204ENST00000413716 FRAS1Q86XX4 4008 aa5.41□□□□□ -1.54
CCDC88A-204ENST00000413716 VPS13BQ7Z7G8 4022 aa5.4□□□□□ -1.54
CCDC88A-204ENST00000413716 KRTAP10-7P60409 375 aaPredicted RBP5.35□□□□□ -1.55
CCDC88A-204ENST00000413716 ANK3Q12955 4377 aaKnown RBP5.3□□□□□ -1.56
CCDC88A-204ENST00000413716 MT1HL1P0DM35 61 aa5.3□□□□□ -1.56
CCDC88A-204ENST00000413716 LORP23490 312 aaPredicted RBP5.29□□□□□ -1.56
CCDC88A-204ENST00000413716 DNAH2Q9P225 4427 aa5.22□□□□□ -1.57
CCDC88A-204ENST00000413716 DNAH1Q9P2D7 4330 aa5.2□□□□□ -1.58
CCDC88A-204ENST00000413716 HUWE1Q7Z6Z7 4374 aaKnown RBP5.2□□□□□ -1.58
CCDC88A-204ENST00000413716 LCE3CQ5T5A8 94 aa5.17□□□□□ -1.58
CCDC88A-204ENST00000413716 DNAH6Q9C0G6 4158 aa5.13□□□□□ -1.59
CCDC88A-204ENST00000413716 KRTAP4-5Q9BYR2 181 aa5.11□□□□□ -1.59
CCDC88A-204ENST00000413716 KRTAP10-4P60372 401 aaPredicted RBP5.1□□□□□ -1.59
CCDC88A-204ENST00000413716 SPRR2FQ96RM1 72 aa5.09□□□□□ -1.59
CCDC88A-204ENST00000413716 KRTAP19-5Q3LI72 72 aa5.07□□□□□ -1.6
CCDC88A-204ENST00000413716 KRTAP19-4Q3LI73 84 aa5.05□□□□□ -1.6
CCDC88A-204ENST00000413716 PRKDCP78527 4128 aaKnown RBP5.02□□□□□ -1.61
CCDC88A-204ENST00000413716 LCE3BQ5TA77 95 aa4.97□□□□□ -1.61
CCDC88A-204ENST00000413716 SPRR2GQ9BYE4 73 aa4.93□□□□□ -1.62
CCDC88A-204ENST00000413716 KRTAP12-4P60329 112 aa4.91□□□□□ -1.62
CCDC88A-204ENST00000413716 FLGP20930 4061 aaPredicted RBP4.9□□□□□ -1.62
CCDC88A-204ENST00000413716 MT1HP80294 61 aa4.82□□□□□ -1.64
CCDC88A-204ENST00000413716 FAT2Q9NYQ8 4349 aa4.78□□□□□ -1.64
CCDC88A-204ENST00000413716 SPRR2EP22531 72 aa4.78□□□□□ -1.64
CCDC88A-204ENST00000413716 SPRR2BP35325 72 aa4.78□□□□□ -1.64
CCDC88A-204ENST00000413716 SPRR2AP35326 72 aa4.78□□□□□ -1.64
CCDC88A-204ENST00000413716 PKHD1P08F94 4074 aa4.75□□□□□ -1.65
CCDC88A-204ENST00000413716 MT2AP02795 61 aa4.73□□□□□ -1.65
CCDC88A-204ENST00000413716 DNAH10Q8IVF4 4471 aa4.71□□□□□ -1.66
CCDC88A-204ENST00000413716 LCE3DQ9BYE3 92 aa4.7□□□□□ -1.66
CCDC88A-204ENST00000413716 MT3P25713 68 aa4.7□□□□□ -1.66
CCDC88A-204ENST00000413716 DNAH9Q9NYC9 4486 aa4.67□□□□□ -1.66
CCDC88A-204ENST00000413716 SPRR2DP22532 72 aa4.66□□□□□ -1.66
CCDC88A-204ENST00000413716 LCE2BO14633 110 aa4.65□□□□□ -1.66
CCDC88A-204ENST00000413716 MT1GP13640 62 aa4.62□□□□□ -1.67
CCDC88A-204ENST00000413716 LCE3EQ5T5B0 92 aa4.61□□□□□ -1.67
CCDC88A-204ENST00000413716 VPS13DQ5THJ4 4388 aa4.6□□□□□ -1.67
CCDC88A-204ENST00000413716 MT1FP04733 61 aa4.6□□□□□ -1.67
CCDC88A-204ENST00000413716 STARD9Q9P2P6 4700 aa4.6□□□□□ -1.67
CCDC88A-204ENST00000413716 DYNC2H1Q8NCM8 4307 aaKnown RBP4.59□□□□□ -1.67
CCDC88A-204ENST00000413716 PKHD1L1Q86WI1 4243 aa4.59□□□□□ -1.68
CCDC88A-204ENST00000413716 KRTAP4-1Q9BYQ7 146 aa4.58□□□□□ -1.68
CCDC88A-204ENST00000413716 DNAH17Q9UFH2 4485 aa4.57□□□□□ -1.68
CCDC88A-204ENST00000413716 DNAH11Q96DT5 4516 aa4.48□□□□□ -1.69
CCDC88A-204ENST00000413716 LCE2CQ5TA81 110 aa4.39□□□□□ -1.71
CCDC88A-204ENST00000413716 PRM1P04553 51 aa4.37□□□□□ -1.71
CCDC88A-204ENST00000413716 PKD1P98161 4303 aa4.36□□□□□ -1.71
CCDC88A-204ENST00000413716 PLECQ15149 4684 aaKnown RBP4.35□□□□□ -1.71
CCDC88A-204ENST00000413716 SPRR5A0A1B0GTR4 108 aa4.35□□□□□ -1.71
CCDC88A-204ENST00000413716 DNAH8Q96JB1 4490 aa4.34□□□□□ -1.71
CCDC88A-204ENST00000413716 MT1XP80297 61 aa4.34□□□□□ -1.72
CCDC88A-204ENST00000413716 KRTAP19-8Q3LI54 63 aa4.32□□□□□ -1.72
CCDC88A-204ENST00000413716 LCE2DQ5TA82 110 aaPredicted RBP4.26□□□□□ -1.73
CCDC88A-204ENST00000413716 DNAH5Q8TE73 4624 aa4.26□□□□□ -1.73
CCDC88A-204ENST00000413716 KRTAP19-1Q8IUB9 90 aa4.2□□□□□ -1.74
CCDC88A-204ENST00000413716 MT1LQ93083 61 aa4.18□□□□□ -1.74
CCDC88A-204ENST00000413716 TNXBP22105 4242 aa4.18□□□□□ -1.74
CCDC88A-204ENST00000413716 LCE1BQ5T7P3 118 aa4.16□□□□□ -1.74
CCDC88A-204ENST00000413716 KRTAP19-3Q7Z4W3 81 aa4.16□□□□□ -1.74
CCDC88A-204ENST00000413716 LCE1DQ5T752 114 aa4.14□□□□□ -1.75
CCDC88A-204ENST00000413716 MT4P47944 62 aa4.13□□□□□ -1.75
CCDC88A-204ENST00000413716 LRP1BQ9NZR2 4599 aa4.12□□□□□ -1.75
CCDC88A-204ENST00000413716 KRTAP4-8A0A0G2JLE6 195 aa4.11□□□□□ -1.75
CCDC88A-204ENST00000413716 KRTAP4-8Q9BYQ9 185 aa4.11□□□□□ -1.75
CCDC88A-204ENST00000413716 LRP1Q07954 4544 aaKnown RBP4.1□□□□□ -1.75
CCDC88A-204ENST00000413716 HSPG2P98160 4391 aa4.09□□□□□ -1.76
CCDC88A-204ENST00000413716 FAT1Q14517 4588 aa4.05□□□□□ -1.76
CCDC88A-204ENST00000413716 APOBP04114 4563 aaKnown RBP4.03□□□□□ -1.76
CCDC88A-204ENST00000413716 MT1BP07438 61 aa4.02□□□□□ -1.77
CCDC88A-204ENST00000413716 MT1EP04732 61 aa3.96□□□□□ -1.78
CCDC88A-204ENST00000413716 KRTAP9-8Q9BYQ0 159 aa3.94□□□□□ -1.78
CCDC88A-204ENST00000413716 FAT3Q8TDW7 4589 aa3.94□□□□□ -1.78
CCDC88A-204ENST00000413716 DYNC1H1Q14204 4646 aaKnown RBP3.94□□□□□ -1.78
CCDC88A-204ENST00000413716 KRTAP4-7Q9BYR0 210 aa3.93□□□□□ -1.78
CCDC88A-204ENST00000413716 SACSQ9NZJ4 4579 aa3.92□□□□□ -1.78
CCDC88A-204ENST00000413716 MT1MQ8N339 61 aa3.9□□□□□ -1.79
CCDC88A-204ENST00000413716 LCE5AQ5TCM9 118 aa3.89□□□□□ -1.79
CCDC88A-204ENST00000413716 KRTAP9-3Q9BYQ3 159 aa3.87□□□□□ -1.79
CCDC88A-204ENST00000413716 LOC100996750A0A140TA64 210 aa3.85□□□□□ -1.79
CCDC88A-204ENST00000413716 MYCBP2O75592 4640 aa3.84□□□□□ -1.79
CCDC88A-204ENST00000413716 LPAP08519 4548 aa3.79□□□□□ -1.8
CCDC88A-204ENST00000413716 KRTAP17-1Q9BYP8 105 aa3.77□□□□□ -1.81
CCDC88A-204ENST00000413716 LCE1CQ5T751 118 aa3.76□□□□□ -1.81
CCDC88A-204ENST00000413716 LCE1EQ5T753 118 aa3.76□□□□□ -1.81
CCDC88A-204ENST00000413716 LCE1FQ5T754 118 aa3.76□□□□□ -1.81
CCDC88A-204ENST00000413716 LCE1AQ5T7P2 110 aa3.76□□□□□ -1.81
CCDC88A-204ENST00000413716 KRTAP2-3P0C7H8 128 aa3.73□□□□□ -1.81
CCDC88A-204ENST00000413716 KRTAP2-4Q9BYR9 128 aa3.73□□□□□ -1.81
CCDC88A-204ENST00000413716 KRTAP2-1Q9BYU5 128 aa3.73□□□□□ -1.81
CCDC88A-204ENST00000413716 DNHD1Q96M86 4753 aa3.71□□□□□ -1.81
CCDC88A-204ENST00000413716 MT1AP04731 61 aa3.69□□□□□ -1.82
CCDC88A-204ENST00000413716 KRTAP6-2Q3LI66 62 aa3.68□□□□□ -1.82
CCDC88A-204ENST00000413716 KRTAP4-9Q9BYQ8 210 aa3.66□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 66.5 ms