RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 PELP1Q8IZL8 1130 aaKnown RBP22.34■■□□□ 1.17
CCDC88A-204ENST00000413716 DCAF8L2P0C7V8 631 aa21.38■■□□□ 1.01
CCDC88A-204ENST00000413716 ERICH6Q7L0X2 663 aa21.37■■□□□ 1.01
CCDC88A-204ENST00000413716 CCER1Q8TC90 406 aaPredicted RBP21.23■□□□□ 0.99
CCDC88A-204ENST00000413716 MYT1Q01538 1121 aa21.17■□□□□ 0.98
CCDC88A-204ENST00000413716 CENPBP07199 599 aaPredicted RBP20.65■□□□□ 0.9
CCDC88A-204ENST00000413716 YTHDC1Q96MU7 727 aaKnown RBP20.56■□□□□ 0.88
CCDC88A-204ENST00000413716 APLP2Q06481 763 aa20.54■□□□□ 0.88
CCDC88A-204ENST00000413716 SUPT5HO00267 1087 aaKnown RBP20.4■□□□□ 0.86
CCDC88A-204ENST00000413716 NEFLP07196 543 aa20.39■□□□□ 0.85
CCDC88A-204ENST00000413716 EHMT2Q96KQ7 1210 aa20.32■□□□□ 0.84
CCDC88A-204ENST00000413716 FAM9AQ8IZU1 332 aaPredicted RBP20.3■□□□□ 0.84
CCDC88A-204ENST00000413716 DAXXQ9UER7 740 aaPredicted RBP20.28■□□□□ 0.84
CCDC88A-204ENST00000413716 TTBK1Q5TCY1 1321 aaPredicted RBP20.21■□□□□ 0.83
CCDC88A-204ENST00000413716 ZEB1P37275 1124 aaPredicted RBP20.01■□□□□ 0.79
CCDC88A-204ENST00000413716 PCGF6Q9BYE7 350 aa19.91■□□□□ 0.78
CCDC88A-204ENST00000413716 RTL5Q5HYW3 569 aaPredicted RBP19.75■□□□□ 0.75
CCDC88A-204ENST00000413716 ZNF316A6NFI3 1004 aaPredicted RBP19.72■□□□□ 0.75
CCDC88A-204ENST00000413716 SHROOM4Q9ULL8 1493 aa19.65■□□□□ 0.74
CCDC88A-204ENST00000413716 ATP1B4Q9UN42 357 aaPredicted RBP19.43■□□□□ 0.7
CCDC88A-204ENST00000413716 CLSPNQ9HAW4 1339 aa19.37■□□□□ 0.69
CCDC88A-204ENST00000413716 RANGAP1P46060 587 aaPredicted RBP19.35■□□□□ 0.69
CCDC88A-204ENST00000413716 GLIPR1L2Q4G1C9 344 aa19.16■□□□□ 0.66
CCDC88A-204ENST00000413716 POLR3GLQ9BT43 218 aa19.14■□□□□ 0.66
CCDC88A-204ENST00000413716 UBTFP17480 764 aaKnown RBP19.02■□□□□ 0.64
CCDC88A-204ENST00000413716 SLC4A1APQ9BWU0 796 aaKnown RBP18.96■□□□□ 0.63
CCDC88A-204ENST00000413716 ZBTB47Q9UFB7 747 aaPredicted RBP18.96■□□□□ 0.63
CCDC88A-204ENST00000413716 EIF5BO60841 1220 aaKnown RBP18.93■□□□□ 0.62
CCDC88A-204ENST00000413716 TRIM41Q8WV44 630 aa18.92■□□□□ 0.62
CCDC88A-204ENST00000413716 NISCHQ9Y2I1 1504 aa18.92■□□□□ 0.62
CCDC88A-204ENST00000413716 ANP32BQ92688 251 aaKnown RBP18.9■□□□□ 0.62
CCDC88A-204ENST00000413716 MYT1LQ9UL68 1186 aa18.89■□□□□ 0.61
CCDC88A-204ENST00000413716 CNGB1Q14028 1251 aaPredicted RBP18.85■□□□□ 0.61
CCDC88A-204ENST00000413716 CDK11AQ9UQ88 783 aaPredicted RBP18.8■□□□□ 0.6
CCDC88A-204ENST00000413716 HRCP23327 699 aa18.77■□□□□ 0.6
CCDC88A-204ENST00000413716 TRIM26Q12899 539 aaPredicted RBP18.72■□□□□ 0.59
CCDC88A-204ENST00000413716 ANP32AP39687 249 aaKnown RBP18.68■□□□□ 0.58
CCDC88A-204ENST00000413716 CHIC1Q5VXU3 224 aa18.67■□□□□ 0.58
CCDC88A-204ENST00000413716 CANXP27824 592 aaKnown RBP18.61■□□□□ 0.57
CCDC88A-204ENST00000413716 ITGAEP38570 1179 aa18.61■□□□□ 0.57
CCDC88A-204ENST00000413716 PPARGC1BQ86YN6 1023 aaKnown RBP18.58■□□□□ 0.57
CCDC88A-204ENST00000413716 DIEXFQ68CQ4 756 aaKnown RBP18.56■□□□□ 0.56
CCDC88A-204ENST00000413716 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.55■□□□□ 0.56
CCDC88A-204ENST00000413716 HNRNPUL2Q1KMD3 747 aaKnown RBP18.55■□□□□ 0.56
CCDC88A-204ENST00000413716 HSP90AA1P07900 732 aaKnown RBP18.53■□□□□ 0.56
CCDC88A-204ENST00000413716 BCANQ96GW7 911 aa18.53■□□□□ 0.56
CCDC88A-204ENST00000413716 BCL11AQ9H165 835 aa18.51■□□□□ 0.55
CCDC88A-204ENST00000413716 SLC24A1O60721 1099 aa18.5■□□□□ 0.55
CCDC88A-204ENST00000413716 CDK11BP21127 795 aaKnown RBP18.46■□□□□ 0.55
CCDC88A-204ENST00000413716 TNNT2P45379 298 aaPredicted RBP18.43■□□□□ 0.54
CCDC88A-204ENST00000413716 NEFMP07197 916 aa18.43■□□□□ 0.54
CCDC88A-204ENST00000413716 GTF3C3Q9Y5Q9 886 aa18.37■□□□□ 0.53
CCDC88A-204ENST00000413716 UPF2Q9HAU5 1272 aaKnown RBP18.36■□□□□ 0.53
CCDC88A-204ENST00000413716 NPM2Q86SE8 214 aaKnown RBP18.35■□□□□ 0.53
CCDC88A-204ENST00000413716 ANP32CO43423 234 aa18.35■□□□□ 0.53
CCDC88A-204ENST00000413716 ARXQ96QS3 562 aa18.14■□□□□ 0.49
CCDC88A-204ENST00000413716 NBR1Q14596 966 aa18.11■□□□□ 0.49
CCDC88A-204ENST00000413716 TRIM52Q96A61 297 aa18.08■□□□□ 0.48
CCDC88A-204ENST00000413716 TRIM44Q96DX7 344 aaPredicted RBP18.08■□□□□ 0.48
CCDC88A-204ENST00000413716 ZNF326Q5BKZ1 582 aaKnown RBP18.05■□□□□ 0.48
CCDC88A-204ENST00000413716 FAM50AQ14320 339 aaKnown RBP18.05■□□□□ 0.48
CCDC88A-204ENST00000413716 NEUROD1Q13562 356 aa18.04■□□□□ 0.48
CCDC88A-204ENST00000413716 ANP32EQ9BTT0 268 aa17.94■□□□□ 0.46
CCDC88A-204ENST00000413716 NCLP19338 710 aaKnown RBP17.92■□□□□ 0.46
CCDC88A-204ENST00000413716 DNTTIP2Q5QJE6 756 aaKnown RBP17.9■□□□□ 0.46
CCDC88A-204ENST00000413716 ZRSR1Q15695 479 aaKnown RBP17.89■□□□□ 0.45
CCDC88A-204ENST00000413716 GOLGA6L2Q8N9W4 650 aaPredicted RBP17.87■□□□□ 0.45
CCDC88A-204ENST00000413716 PTMAP06454 111 aaKnown RBP17.86■□□□□ 0.45
CCDC88A-204ENST00000413716 ACIN1Q9UKV3 1341 aaKnown RBP17.86■□□□□ 0.45
CCDC88A-204ENST00000413716 GOLGA6L22H0YM25 854 aa17.85■□□□□ 0.45
CCDC88A-204ENST00000413716 BECN1Q14457 450 aa17.82■□□□□ 0.44
CCDC88A-204ENST00000413716 MYH16Q9H6N6 1097 aa17.81■□□□□ 0.44
CCDC88A-204ENST00000413716 FKBP8Q14318 412 aa17.81■□□□□ 0.44
CCDC88A-204ENST00000413716 NAP1L5Q96NT1 182 aaPredicted RBP17.79■□□□□ 0.44
CCDC88A-204ENST00000413716 GOLGA6L6A8MZA4 724 aa17.77■□□□□ 0.44
CCDC88A-204ENST00000413716 DDRGK1Q96HY6 314 aa17.77■□□□□ 0.43
CCDC88A-204ENST00000413716 ERICH6BQ5W0A0 696 aa17.76■□□□□ 0.43
CCDC88A-204ENST00000413716 CCDC136Q96JN2 1154 aa17.75■□□□□ 0.43
CCDC88A-204ENST00000413716 AMER1Q5JTC6 1135 aaPredicted RBP17.73■□□□□ 0.43
CCDC88A-204ENST00000413716 CHAF1AQ13111 956 aaPredicted RBP17.68■□□□□ 0.42
CCDC88A-204ENST00000413716 LOC105371045A0A1W2PR82 267 aa17.66■□□□□ 0.42
CCDC88A-204ENST00000413716 NRDCO43847 1150 aa17.64■□□□□ 0.41
CCDC88A-204ENST00000413716 TULP1O00294 542 aaPredicted RBP17.63■□□□□ 0.41
CCDC88A-204ENST00000413716 HNRNPUQ00839 825 aaKnown RBP eCLIP17.6■□□□□ 0.41
CCDC88A-204ENST00000413716 CASC1Q6TDU7 716 aa17.6■□□□□ 0.41
CCDC88A-204ENST00000413716 L1TD1Q5T7N2 865 aaKnown RBP17.56■□□□□ 0.4
CCDC88A-204ENST00000413716 TNNT3P45378 269 aaPredicted RBP17.51■□□□□ 0.39
CCDC88A-204ENST00000413716 FAM9BQ8IZU0 186 aa17.5■□□□□ 0.39
CCDC88A-204ENST00000413716 WDR43Q15061 677 aaKnown RBP eCLIP17.5■□□□□ 0.395e-6■□□□□ 10.7
CCDC88A-204ENST00000413716 CALRP27797 417 aaKnown RBP17.49■□□□□ 0.39
CCDC88A-204ENST00000413716 TPRNQ4KMQ1 711 aa17.47■□□□□ 0.39
CCDC88A-204ENST00000413716 ESF1Q9H501 851 aaKnown RBP17.47■□□□□ 0.39
CCDC88A-204ENST00000413716 NCBP3Q53F19 620 aaKnown RBP17.47■□□□□ 0.39
CCDC88A-204ENST00000413716 MSNP26038 577 aaKnown RBP17.46■□□□□ 0.38
CCDC88A-204ENST00000413716 NOC3LQ8WTT2 800 aaKnown RBP17.45■□□□□ 0.38
CCDC88A-204ENST00000413716 RTN4Q9NQC3 1192 aaKnown RBP17.45■□□□□ 0.38
CCDC88A-204ENST00000413716 TMC1Q8TDI8 760 aa17.45■□□□□ 0.38
CCDC88A-204ENST00000413716 PLCB2Q00722 1185 aa17.44■□□□□ 0.38
CCDC88A-204ENST00000413716 SALL2Q9Y467 1007 aaPredicted RBP17.43■□□□□ 0.38
CCDC88A-204ENST00000413716 TONSLQ96HA7 1378 aa17.43■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 64.8 ms