RNA–Protein interactions for RNA: ENST00000410093.5

LIMS1-205, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,526 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-205ENST00000410093 KRTAP9-4Q9BYQ2 154 aa7.41□□□□□ -1.22
LIMS1-205ENST00000410093 KRTAP4-8A0A0G2JLE6 195 aa7.4□□□□□ -1.22
LIMS1-205ENST00000410093 MT1HL1P0DM35 61 aa7.39□□□□□ -1.23
LIMS1-205ENST00000410093 Q5VV11 94 aa7.39□□□□□ -1.23
LIMS1-205ENST00000410093 BRK1Q8WUW1 75 aa7.39□□□□□ -1.23
LIMS1-205ENST00000410093 PRR15LQ9BU68 103 aa7.39□□□□□ -1.23
LIMS1-205ENST00000410093 C9orf92A6NGG3 77 aa7.37□□□□□ -1.23
LIMS1-205ENST00000410093 TNXBP22105 4242 aa7.32□□□□□ -1.24
LIMS1-205ENST00000410093 SPTSSBQ8NFR3 76 aa7.31□□□□□ -1.24
LIMS1-205ENST00000410093 HMCN2Q8NDA2 5059 aa7.29□□□□□ -1.24
LIMS1-205ENST00000410093 ATP11AUNQ6ZP68 121 aa7.27□□□□□ -1.25
LIMS1-205ENST00000410093 SPINK7P58062 85 aa7.27□□□□□ -1.25
LIMS1-205ENST00000410093 KRTAP4-12Q9BQ66 201 aa7.27□□□□□ -1.25
LIMS1-205ENST00000410093 A6NED7 52 aa7.26□□□□□ -1.25
LIMS1-205ENST00000410093 RPL37P61927 97 aaKnown RBP7.23□□□□□ -1.25
LIMS1-205ENST00000410093 A0A1B0GU69 56 aa7.22□□□□□ -1.25
LIMS1-205ENST00000410093 CDC42SE1Q9NRR8 79 aa7.22□□□□□ -1.25
LIMS1-205ENST00000410093 KRTAP4-7Q9BYR0 210 aa7.19□□□□□ -1.26
LIMS1-205ENST00000410093 COX6B2Q6YFQ2 88 aa7.18□□□□□ -1.26
LIMS1-205ENST00000410093 UBR4Q5T4S7 5183 aa7.16□□□□□ -1.26
LIMS1-205ENST00000410093 SEC61GP60059 68 aa7.16□□□□□ -1.26
LIMS1-205ENST00000410093 TPRXLQ17RH7 258 aa7.12□□□□□ -1.27
LIMS1-205ENST00000410093 LCA10Q71F78 164 aa7.12□□□□□ -1.27
LIMS1-205ENST00000410093 KRTAP3-1Q9BYR8 98 aa7.11□□□□□ -1.27
LIMS1-205ENST00000410093 UQCR11O14957 56 aa7.1□□□□□ -1.27
LIMS1-205ENST00000410093 LRP2P98164 4655 aa7.09□□□□□ -1.27
LIMS1-205ENST00000410093 SPATA8Q6RVD6 105 aa7.06□□□□□ -1.28
LIMS1-205ENST00000410093 PMAIP1Q13794 54 aa7.03□□□□□ -1.28
LIMS1-205ENST00000410093 MIR22HGQ0VDD5 57 aa7.01□□□□□ -1.29
LIMS1-205ENST00000410093 A8MU10 97 aa6.99□□□□□ -1.29
LIMS1-205ENST00000410093 LPAP08519 4548 aa6.99□□□□□ -1.29
LIMS1-205ENST00000410093 LCE1DQ5T752 114 aa6.98□□□□□ -1.29
LIMS1-205ENST00000410093 RNF213Q63HN8 5207 aa6.95□□□□□ -1.3
LIMS1-205ENST00000410093 KRTAP19-1Q8IUB9 90 aa6.93□□□□□ -1.3
LIMS1-205ENST00000410093 A6NN06 94 aa6.92□□□□□ -1.3
LIMS1-205ENST00000410093 H1FX-AS1Q4G0G2 97 aa6.91□□□□□ -1.3
LIMS1-205ENST00000410093 RBM12B-AS1Q9P1G2 102 aa6.91□□□□□ -1.3
LIMS1-205ENST00000410093 S4R3F8 94 aa6.91□□□□□ -1.3
LIMS1-205ENST00000410093 A0A1B0GU33 70 aa6.91□□□□□ -1.3
LIMS1-205ENST00000410093 KRTAP4-2Q9BYR5 136 aa6.91□□□□□ -1.3
LIMS1-205ENST00000410093 SEC61BP60468 96 aaKnown RBP6.89□□□□□ -1.31
LIMS1-205ENST00000410093 KRTAP4-9Q9BYQ8 210 aa6.88□□□□□ -1.31
LIMS1-205ENST00000410093 KTN1-AS1Q86SY8 53 aa6.87□□□□□ -1.31
LIMS1-205ENST00000410093 H0YAA0 97 aa6.78□□□□□ -1.32
LIMS1-205ENST00000410093 CSAG1Q6PB30 78 aa6.76□□□□□ -1.33
LIMS1-205ENST00000410093 MUC2Q02817 5179 aa6.75□□□□□ -1.33
LIMS1-205ENST00000410093 K7ERS5 55 aa6.73□□□□□ -1.33
LIMS1-205ENST00000410093 KRTAP10-6P60371 365 aaPredicted RBP6.72□□□□□ -1.33
LIMS1-205ENST00000410093 MUC17Q685J3 4493 aa6.69□□□□□ -1.34
LIMS1-205ENST00000410093 KRTAP5-3Q6L8H2 238 aa6.68□□□□□ -1.34
LIMS1-205ENST00000410093 ADM2Q7Z4H4 148 aa6.62□□□□□ -1.35
LIMS1-205ENST00000410093 M0QZ58 72 aa6.6□□□□□ -1.35
LIMS1-205ENST00000410093 FAT4Q6V0I7 4981 aa6.58□□□□□ -1.36
LIMS1-205ENST00000410093 P0C880 135 aa6.57□□□□□ -1.36
LIMS1-205ENST00000410093 KRTAP9-8Q9BYQ0 159 aa6.53□□□□□ -1.36
LIMS1-205ENST00000410093 KRTAP13-4Q3LI77 160 aa6.52□□□□□ -1.37
LIMS1-205ENST00000410093 KRTAP4-11Q9BYQ6 195 aa6.51□□□□□ -1.37
LIMS1-205ENST00000410093 KRTAP4-1Q9BYQ7 146 aa6.51□□□□□ -1.37
LIMS1-205ENST00000410093 KRTAP19-2Q3LHN2 52 aa6.46□□□□□ -1.37
LIMS1-205ENST00000410093 A0A0D9SG42 100 aa6.45□□□□□ -1.38
LIMS1-205ENST00000410093 ROMO1P60602 79 aa6.43□□□□□ -1.38
LIMS1-205ENST00000410093 PRAC1Q96KF2 57 aa6.42□□□□□ -1.38
LIMS1-205ENST00000410093 R4GN34 69 aa6.4□□□□□ -1.39
LIMS1-205ENST00000410093 KRTAP12-1P59990 96 aa6.36□□□□□ -1.39
LIMS1-205ENST00000410093 KRTAP12-2P59991 146 aa6.33□□□□□ -1.4
LIMS1-205ENST00000410093 KRTAP25-1Q3LHN0 102 aa6.33□□□□□ -1.4
LIMS1-205ENST00000410093 CRIPTQ9P021 101 aa6.33□□□□□ -1.4
LIMS1-205ENST00000410093 SPINT4Q6UDR6 99 aa6.32□□□□□ -1.4
LIMS1-205ENST00000410093 M0R2T5 61 aa6.31□□□□□ -1.4
LIMS1-205ENST00000410093 MT1HP80294 61 aa6.3□□□□□ -1.4
LIMS1-205ENST00000410093 LINC01554Q52M75 96 aa6.3□□□□□ -1.4
LIMS1-205ENST00000410093 FLGP20930 4061 aaPredicted RBP6.29□□□□□ -1.4
LIMS1-205ENST00000410093 FSIP2Q5CZC0 6907 aa6.09□□□□□ -1.43
LIMS1-205ENST00000410093 CRCT1Q9UGL9 99 aa6.07□□□□□ -1.44
LIMS1-205ENST00000410093 CAMK2N1Q7Z7J9 78 aa6.03□□□□□ -1.44
LIMS1-205ENST00000410093 SPRR2GQ9BYE4 73 aa6.01□□□□□ -1.45
LIMS1-205ENST00000410093 LCE4AQ5TA78 99 aa6□□□□□ -1.45
LIMS1-205ENST00000410093 C10orf95Q9H7T3 257 aa5.98□□□□□ -1.45
LIMS1-205ENST00000410093 PP632Q6XCG6 107 aa5.94□□□□□ -1.46
LIMS1-205ENST00000410093 H3BS24 57 aa5.93□□□□□ -1.46
LIMS1-205ENST00000410093 LCE5AQ5TCM9 118 aa5.93□□□□□ -1.46
LIMS1-205ENST00000410093 PLAC4Q8WY50 150 aa5.92□□□□□ -1.46
LIMS1-205ENST00000410093 KRTAP10-10P60014 251 aa5.88□□□□□ -1.47
LIMS1-205ENST00000410093 KRTAP23-1A1A580 65 aa5.87□□□□□ -1.47
LIMS1-205ENST00000410093 MT2AP02795 61 aa5.87□□□□□ -1.47
LIMS1-205ENST00000410093 TNP1P09430 55 aa5.84□□□□□ -1.48
LIMS1-205ENST00000410093 MT1FP04733 61 aa5.83□□□□□ -1.48
LIMS1-205ENST00000410093 KRTAP19-8Q3LI54 63 aa5.79□□□□□ -1.48
LIMS1-205ENST00000410093 KRTAP9-3Q9BYQ3 159 aa5.75□□□□□ -1.49
LIMS1-205ENST00000410093 USH2AO75445 5202 aa5.75□□□□□ -1.49
LIMS1-205ENST00000410093 KRTAP9-7A8MTY7 169 aa5.71□□□□□ -1.5
LIMS1-205ENST00000410093 SSPOA2VEC9 5147 aa5.68□□□□□ -1.5
LIMS1-205ENST00000410093 KRTAP15-1Q3LI76 137 aa5.67□□□□□ -1.5
LIMS1-205ENST00000410093 MT1BP07438 61 aa5.61□□□□□ -1.51
LIMS1-205ENST00000410093 FCGBPQ9Y6R7 5405 aaPredicted RBP5.59□□□□□ -1.52
LIMS1-205ENST00000410093 PRO2289Q9P1D8 64 aa5.56□□□□□ -1.52
LIMS1-205ENST00000410093 KRTAP19-6Q3LI70 58 aa5.54□□□□□ -1.52
LIMS1-205ENST00000410093 KRTAP10-5P60370 271 aa5.51□□□□□ -1.53
LIMS1-205ENST00000410093 MT1XP80297 61 aa5.51□□□□□ -1.53
LIMS1-205ENST00000410093 MACF1Q9UPN3 7388 aaKnown RBP5.5□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 158.8 ms