RNA–Protein interactions for RNA: ENST00000409470.5

USP39-203, Transcript of ubiquitin specific peptidase 39, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP39, Length 2,034 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-203ENST00000409470 LPAP08519 4548 aa10.61□□□□□ -0.71
USP39-203ENST00000409470 LCA10Q71F78 164 aa10.61□□□□□ -0.71
USP39-203ENST00000409470 SEC61GP60059 68 aa10.6□□□□□ -0.71
USP39-203ENST00000409470 CDC42SE1Q9NRR8 79 aa10.58□□□□□ -0.72
USP39-203ENST00000409470 UQCR11O14957 56 aa10.48□□□□□ -0.73
USP39-203ENST00000409470 S4R3F8 94 aa10.46□□□□□ -0.73
USP39-203ENST00000409470 SEC61BP60468 96 aaKnown RBP10.46□□□□□ -0.74
USP39-203ENST00000409470 RBM12B-AS1Q9P1G2 102 aa10.44□□□□□ -0.74
USP39-203ENST00000409470 H1FX-AS1Q4G0G2 97 aa10.43□□□□□ -0.74
USP39-203ENST00000409470 KRTAP3-3Q9BYR6 98 aa10.42□□□□□ -0.74
USP39-203ENST00000409470 MIR22HGQ0VDD5 57 aa10.41□□□□□ -0.74
USP39-203ENST00000409470 SPATA8Q6RVD6 105 aa10.39□□□□□ -0.75
USP39-203ENST00000409470 PMAIP1Q13794 54 aa10.34□□□□□ -0.75
USP39-203ENST00000409470 A0A1B0GU33 70 aa10.31□□□□□ -0.76
USP39-203ENST00000409470 KRTAP4-1Q9BYQ7 146 aa10.22□□□□□ -0.77
USP39-203ENST00000409470 H0YAA0 97 aa10.21□□□□□ -0.78
USP39-203ENST00000409470 MUC17Q685J3 4493 aa10.2□□□□□ -0.78
USP39-203ENST00000409470 A6NN06 94 aa10.19□□□□□ -0.78
USP39-203ENST00000409470 CSAG1Q6PB30 78 aa10.17□□□□□ -0.78
USP39-203ENST00000409470 PCLOQ9Y6V0 5065 aa10.17□□□□□ -0.78
USP39-203ENST00000409470 KRTAP10-6P60371 365 aaPredicted RBP10.16□□□□□ -0.78
USP39-203ENST00000409470 KRTAP3-2Q9BYR7 98 aa10.14□□□□□ -0.79
USP39-203ENST00000409470 HERC1Q15751 4861 aa10.09□□□□□ -0.79
USP39-203ENST00000409470 ADM2Q7Z4H4 148 aa10.07□□□□□ -0.8
USP39-203ENST00000409470 P0C880 135 aa10.06□□□□□ -0.8
USP39-203ENST00000409470 HMCN2Q8NDA2 5059 aa10.01□□□□□ -0.81
USP39-203ENST00000409470 KTN1-AS1Q86SY8 53 aa9.99□□□□□ -0.81
USP39-203ENST00000409470 KRTAP13-4Q3LI77 160 aa9.97□□□□□ -0.81
USP39-203ENST00000409470 KRTAP19-2Q3LHN2 52 aa9.96□□□□□ -0.81
USP39-203ENST00000409470 A0A0D9SG42 100 aa9.89□□□□□ -0.83
USP39-203ENST00000409470 K7ERS5 55 aa9.87□□□□□ -0.83
USP39-203ENST00000409470 MUC2Q02817 5179 aa9.87□□□□□ -0.83
USP39-203ENST00000409470 M0QZ58 72 aa9.78□□□□□ -0.84
USP39-203ENST00000409470 FLGP20930 4061 aaPredicted RBP9.71□□□□□ -0.86
USP39-203ENST00000409470 R4GN34 69 aa9.68□□□□□ -0.86
USP39-203ENST00000409470 PRAC1Q96KF2 57 aa9.68□□□□□ -0.86
USP39-203ENST00000409470 KRTAP12-2P59991 146 aa9.61□□□□□ -0.87
USP39-203ENST00000409470 SPINT4Q6UDR6 99 aa9.61□□□□□ -0.87
USP39-203ENST00000409470 LORP23490 312 aaPredicted RBP9.61□□□□□ -0.87
USP39-203ENST00000409470 KRTAP12-1P59990 96 aa9.6□□□□□ -0.87
USP39-203ENST00000409470 LINC01554Q52M75 96 aa9.59□□□□□ -0.87
USP39-203ENST00000409470 LCE2CQ5TA81 110 aa9.59□□□□□ -0.87
USP39-203ENST00000409470 UBR4Q5T4S7 5183 aa9.52□□□□□ -0.88
USP39-203ENST00000409470 ROMO1P60602 79 aa9.51□□□□□ -0.89
USP39-203ENST00000409470 RNF213Q63HN8 5207 aa9.51□□□□□ -0.89
USP39-203ENST00000409470 FAT4Q6V0I7 4981 aa9.45□□□□□ -0.9
USP39-203ENST00000409470 M0R2T5 61 aa9.43□□□□□ -0.9
USP39-203ENST00000409470 MT1HP80294 61 aa9.39□□□□□ -0.91
USP39-203ENST00000409470 CRIPTQ9P021 101 aa9.37□□□□□ -0.91
USP39-203ENST00000409470 KRTAP25-1Q3LHN0 102 aa9.31□□□□□ -0.92
USP39-203ENST00000409470 CAMK2N1Q7Z7J9 78 aa9.14□□□□□ -0.95
USP39-203ENST00000409470 MT2AP02795 61 aa9.12□□□□□ -0.95
USP39-203ENST00000409470 KRTAP10-10P60014 251 aa9.1□□□□□ -0.95
USP39-203ENST00000409470 C10orf95Q9H7T3 257 aa9.1□□□□□ -0.95
USP39-203ENST00000409470 SPRR2GQ9BYE4 73 aa9.09□□□□□ -0.95
USP39-203ENST00000409470 KRTAP9-8Q9BYQ0 159 aa9.09□□□□□ -0.95
USP39-203ENST00000409470 MT1FP04733 61 aa9.09□□□□□ -0.95
USP39-203ENST00000409470 KRTAP19-1Q8IUB9 90 aa9.05□□□□□ -0.96
USP39-203ENST00000409470 PLAC4Q8WY50 150 aa8.95□□□□□ -0.98
USP39-203ENST00000409470 KRTAP19-8Q3LI54 63 aa8.78□□□□□ -1
USP39-203ENST00000409470 KRTAP9-3Q9BYQ3 159 aa8.74□□□□□ -1.01
USP39-203ENST00000409470 TNP1P09430 55 aa8.72□□□□□ -1.01
USP39-203ENST00000409470 LCE2AQ5TA79 106 aaPredicted RBP8.71□□□□□ -1.02
USP39-203ENST00000409470 MT1BP07438 61 aa8.66□□□□□ -1.02
USP39-203ENST00000409470 PP632Q6XCG6 107 aa8.64□□□□□ -1.03
USP39-203ENST00000409470 KRTAP23-1A1A580 65 aa8.48□□□□□ -1.05
USP39-203ENST00000409470 KRTAP10-5P60370 271 aa8.47□□□□□ -1.05
USP39-203ENST00000409470 MT1XP80297 61 aa8.47□□□□□ -1.05
USP39-203ENST00000409470 LCE2BO14633 110 aa8.46□□□□□ -1.06
USP39-203ENST00000409470 PRO2289Q9P1D8 64 aa8.34□□□□□ -1.07
USP39-203ENST00000409470 KRTAP15-1Q3LI76 137 aa8.32□□□□□ -1.08
USP39-203ENST00000409470 LCE3AQ5TA76 89 aa8.29□□□□□ -1.08
USP39-203ENST00000409470 KRTAP10-7P60409 375 aaPredicted RBP8.19□□□□□ -1.1
USP39-203ENST00000409470 KRTAP10-12P60413 245 aa8.19□□□□□ -1.1
USP39-203ENST00000409470 USH2AO75445 5202 aa8.16□□□□□ -1.1
USP39-203ENST00000409470 KRTAP8-1Q8IUC2 63 aa8.08□□□□□ -1.12
USP39-203ENST00000409470 H3BS24 57 aa7.97□□□□□ -1.13
USP39-203ENST00000409470 KRTAP12-3P60328 96 aa7.94□□□□□ -1.14
USP39-203ENST00000409470 NDUFAF8A1L188 74 aa7.91□□□□□ -1.14
USP39-203ENST00000409470 SSPOA2VEC9 5147 aa7.85□□□□□ -1.15
USP39-203ENST00000409470 KRTAP19-6Q3LI70 58 aa7.8□□□□□ -1.16
USP39-203ENST00000409470 LUZP6Q538Z0 58 aa7.79□□□□□ -1.16
USP39-203ENST00000409470 KRTAP4-8A0A0G2JLE6 195 aa7.79□□□□□ -1.16
USP39-203ENST00000409470 KRTAP4-8Q9BYQ9 185 aa7.79□□□□□ -1.16
USP39-203ENST00000409470 SPRR5A0A1B0GTR4 108 aa7.78□□□□□ -1.16
USP39-203ENST00000409470 KRTAP19-5Q3LI72 72 aa7.78□□□□□ -1.16
USP39-203ENST00000409470 KMT2DO14686 5537 aa7.75□□□□□ -1.17
USP39-203ENST00000409470 LCE2DQ5TA82 110 aaPredicted RBP7.74□□□□□ -1.17
USP39-203ENST00000409470 FSIP2Q5CZC0 6907 aa7.68□□□□□ -1.18
USP39-203ENST00000409470 KRTAP19-7Q3SYF9 63 aa7.55□□□□□ -1.2
USP39-203ENST00000409470 KRTAP9-2Q9BYQ4 174 aa7.49□□□□□ -1.21
USP39-203ENST00000409470 LCE3CQ5T5A8 94 aa7.44□□□□□ -1.22
USP39-203ENST00000409470 FCGBPQ9Y6R7 5405 aaPredicted RBP7.41□□□□□ -1.22
USP39-203ENST00000409470 MT1EP04732 61 aa7.4□□□□□ -1.23
USP39-203ENST00000409470 MT1LQ93083 61 aa7.31□□□□□ -1.24
USP39-203ENST00000409470 KRTAP19-4Q3LI73 84 aa7.25□□□□□ -1.25
USP39-203ENST00000409470 KRTAP4-7Q9BYR0 210 aa7.2□□□□□ -1.26
USP39-203ENST00000409470 CRCT1Q9UGL9 99 aa7.2□□□□□ -1.26
USP39-203ENST00000409470 KRTAP9-6A8MVA2 160 aa7.06□□□□□ -1.28
USP39-203ENST00000409470 MACF1Q9UPN3 7388 aaKnown RBP7.06□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 79.5 ms