RNA–Protein interactions for RNA: ENST00000406019.1

HMGB1P13-201, Transcript of high mobility group box 1 pseudogene 13, humanhuman

BASIC

Gene HMGB1P13, Length 642 nt, Biotype processed pseudogene.

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P13-201ENST00000406019 PRM1P04553 51 aa1.03□□□□□ -2.24
HMGB1P13-201ENST00000406019 DEFB124Q8NES8 71 aa1.03□□□□□ -2.24
HMGB1P13-201ENST00000406019 CHD8Q9HCK8 2581 aa1.03□□□□□ -2.24
HMGB1P13-201ENST00000406019 NIPBLQ6KC79 2804 aaeCLIP1.03□□□□□ -2.24
HMGB1P13-201ENST00000406019 NCOR2Q9Y618 2525 aa1.03□□□□□ -2.25
HMGB1P13-201ENST00000406019 NOTCH1P46531 2555 aa1.02□□□□□ -2.25
HMGB1P13-201ENST00000406019 MAP1AP78559 2803 aaPredicted RBP1.02□□□□□ -2.25
HMGB1P13-201ENST00000406019 CSMD1Q96PZ7 3565 aa1.02□□□□□ -2.25
HMGB1P13-201ENST00000406019 PLECQ15149 4684 aaKnown RBP1.02□□□□□ -2.25
HMGB1P13-201ENST00000406019 HIVEP3Q5T1R4 2406 aa1.02□□□□□ -2.25
HMGB1P13-201ENST00000406019 VPS13AQ96RL7 3174 aa1.02□□□□□ -2.25
HMGB1P13-201ENST00000406019 CFAP47Q6ZTR5 3102 aa1.02□□□□□ -2.25
HMGB1P13-201ENST00000406019 PKD1P98161 4303 aa1.01□□□□□ -2.25
HMGB1P13-201ENST00000406019 H3BNG1 76 aa1.01□□□□□ -2.25
HMGB1P13-201ENST00000406019 KRTAP19-3Q7Z4W3 81 aa1.01□□□□□ -2.25
HMGB1P13-201ENST00000406019 SPEGQ15772 3267 aa1.01□□□□□ -2.25
HMGB1P13-201ENST00000406019 LRRK2Q5S007 2527 aa1□□□□□ -2.25
HMGB1P13-201ENST00000406019 PTPN13Q12923 2485 aa1□□□□□ -2.25
HMGB1P13-201ENST00000406019 FLGP20930 4061 aaPredicted RBP1□□□□□ -2.25
HMGB1P13-201ENST00000406019 KALRNO60229 2985 aa0.99□□□□□ -2.25
HMGB1P13-201ENST00000406019 FAM186AA6NE01 2351 aa0.99□□□□□ -2.25
HMGB1P13-201ENST00000406019 DNAH9Q9NYC9 4486 aa0.99□□□□□ -2.25
HMGB1P13-201ENST00000406019 NSD1Q96L73 2696 aaPredicted RBP0.99□□□□□ -2.25
HMGB1P13-201ENST00000406019 UNC79Q9P2D8 2635 aa0.99□□□□□ -2.25
HMGB1P13-201ENST00000406019 DNAH1Q9P2D7 4330 aa0.99□□□□□ -2.25
HMGB1P13-201ENST00000406019 CACNA1AO00555 2505 aa0.99□□□□□ -2.25
HMGB1P13-201ENST00000406019 DNAH6Q9C0G6 4158 aa0.99□□□□□ -2.25
HMGB1P13-201ENST00000406019 GOLGB1Q14789 3259 aaKnown RBP0.99□□□□□ -2.25
HMGB1P13-201ENST00000406019 ZANQ9Y493 2812 aa0.99□□□□□ -2.25
HMGB1P13-201ENST00000406019 MXRA5Q9NR99 2828 aa0.98□□□□□ -2.25
HMGB1P13-201ENST00000406019 FREM2Q5SZK8 3169 aa0.98□□□□□ -2.25
HMGB1P13-201ENST00000406019 WDFY4Q6ZS81 3184 aa0.98□□□□□ -2.25
HMGB1P13-201ENST00000406019 HUWE1Q7Z6Z7 4374 aaKnown RBP0.97□□□□□ -2.25
HMGB1P13-201ENST00000406019 SVEP1Q4LDE5 3571 aa0.97□□□□□ -2.25
HMGB1P13-201ENST00000406019 DNAH17Q9UFH2 4485 aa0.97□□□□□ -2.25
HMGB1P13-201ENST00000406019 SPG11Q96JI7 2443 aa0.97□□□□□ -2.25
HMGB1P13-201ENST00000406019 LRP1Q07954 4544 aaKnown RBP0.96□□□□□ -2.26
HMGB1P13-201ENST00000406019 UTRNP46939 3433 aa0.96□□□□□ -2.26
HMGB1P13-201ENST00000406019 ANKHD1Q8IWZ3 2542 aaKnown RBP0.96□□□□□ -2.26
HMGB1P13-201ENST00000406019 CMYA5Q8N3K9 4069 aa0.96□□□□□ -2.26
HMGB1P13-201ENST00000406019 SETXQ7Z333 2677 aaKnown RBP0.95□□□□□ -2.26
HMGB1P13-201ENST00000406019 PKD1L1Q8TDX9 2849 aa0.95□□□□□ -2.26
HMGB1P13-201ENST00000406019 XIRP2A4UGR9 3374 aa0.95□□□□□ -2.26
HMGB1P13-201ENST00000406019 USP9XQ93008 2570 aaPredicted RBP0.95□□□□□ -2.26
HMGB1P13-201ENST00000406019 C9orf92A6NGG3 77 aa0.95□□□□□ -2.26
HMGB1P13-201ENST00000406019 KRTAP8-1Q8IUC2 63 aa0.95□□□□□ -2.26
HMGB1P13-201ENST00000406019 DNAH5Q8TE73 4624 aa0.95□□□□□ -2.26
HMGB1P13-201ENST00000406019 TRRAPQ9Y4A5 3859 aa0.94□□□□□ -2.26
HMGB1P13-201ENST00000406019 ITPR2Q14571 2701 aa0.94□□□□□ -2.26
HMGB1P13-201ENST00000406019 TEP1Q99973 2627 aaKnown RBP0.93□□□□□ -2.26
HMGB1P13-201ENST00000406019 LINC01556Q5JQF7 62 aa0.93□□□□□ -2.26
HMGB1P13-201ENST00000406019 CSMD2Q7Z408 3487 aa0.93□□□□□ -2.26
HMGB1P13-201ENST00000406019 LAMA3Q16787 3333 aa0.93□□□□□ -2.26
HMGB1P13-201ENST00000406019 GPR98Q8WXG9 6306 aa0.92□□□□□ -2.26
HMGB1P13-201ENST00000406019 MTORP42345 2549 aa0.92□□□□□ -2.26
HMGB1P13-201ENST00000406019 ZFYVE26Q68DK2 2539 aa0.92□□□□□ -2.26
HMGB1P13-201ENST00000406019 USP34Q70CQ2 3546 aa0.92□□□□□ -2.26
HMGB1P13-201ENST00000406019 TGP01266 2768 aa0.91□□□□□ -2.26
HMGB1P13-201ENST00000406019 CFAP46Q8IYW2 2715 aa0.91□□□□□ -2.26
HMGB1P13-201ENST00000406019 FAT1Q14517 4588 aa0.91□□□□□ -2.26
HMGB1P13-201ENST00000406019 LPAP08519 4548 aa0.91□□□□□ -2.26
HMGB1P13-201ENST00000406019 TEX15Q9BXT5 2789 aa0.91□□□□□ -2.26
HMGB1P13-201ENST00000406019 SONP18583 2426 aaKnown RBP0.91□□□□□ -2.26
HMGB1P13-201ENST00000406019 ACANP16112 2415 aa0.9□□□□□ -2.26
HMGB1P13-201ENST00000406019 DYNC1H1Q14204 4646 aaKnown RBP0.9□□□□□ -2.26
HMGB1P13-201ENST00000406019 ASPMQ8IZT6 3477 aa0.9□□□□□ -2.26
HMGB1P13-201ENST00000406019 ACACBO00763 2458 aa0.9□□□□□ -2.27
HMGB1P13-201ENST00000406019 ANKRD11Q6UB99 2663 aaPredicted RBP0.9□□□□□ -2.27
HMGB1P13-201ENST00000406019 ADGRG4Q8IZF6 3080 aa0.9□□□□□ -2.27
HMGB1P13-201ENST00000406019 SMR3BP02814 79 aaPredicted RBP0.89□□□□□ -2.27
HMGB1P13-201ENST00000406019 FLNAP21333 2647 aaKnown RBP0.89□□□□□ -2.27
HMGB1P13-201ENST00000406019 LOC400499M0QZD8 3231 aa0.89□□□□□ -2.27
HMGB1P13-201ENST00000406019 PKHD1P08F94 4074 aa0.89□□□□□ -2.27
HMGB1P13-201ENST00000406019 FLNBO75369 2602 aaKnown RBP0.87□□□□□ -2.27
HMGB1P13-201ENST00000406019 TENM3Q9P273 2699 aa0.87□□□□□ -2.27
HMGB1P13-201ENST00000406019 UNC80Q8N2C7 3258 aa0.87□□□□□ -2.27
HMGB1P13-201ENST00000406019 CD52P31358 61 aa0.87□□□□□ -2.27
HMGB1P13-201ENST00000406019 DEFB133Q30KQ1 61 aa0.87□□□□□ -2.27
HMGB1P13-201ENST00000406019 UBR4Q5T4S7 5183 aa0.87□□□□□ -2.27
HMGB1P13-201ENST00000406019 MYO18BQ8IUG5 2567 aa0.87□□□□□ -2.27
HMGB1P13-201ENST00000406019 VPS13CQ709C8 3753 aa0.86□□□□□ -2.27
HMGB1P13-201ENST00000406019 FASNP49327 2511 aaKnown RBP0.86□□□□□ -2.27
HMGB1P13-201ENST00000406019 TLN2Q9Y4G6 2542 aa0.86□□□□□ -2.27
HMGB1P13-201ENST00000406019 EP400Q96L91 3159 aa0.86□□□□□ -2.27
HMGB1P13-201ENST00000406019 HTN3P15516 51 aa0.86□□□□□ -2.27
HMGB1P13-201ENST00000406019 MUC17Q685J3 4493 aa0.85□□□□□ -2.27
HMGB1P13-201ENST00000406019 LAMA1P25391 3075 aa0.85□□□□□ -2.27
HMGB1P13-201ENST00000406019 MYO15AQ9UKN7 3530 aa0.85□□□□□ -2.27
HMGB1P13-201ENST00000406019 CENPFP49454 3210 aa0.85□□□□□ -2.27
HMGB1P13-201ENST00000406019 KRTAP19-5Q3LI72 72 aa0.85□□□□□ -2.27
HMGB1P13-201ENST00000406019 U3KQA8 63 aa0.85□□□□□ -2.27
HMGB1P13-201ENST00000406019 LAMA2P24043 3122 aaKnown RBP0.84□□□□□ -2.27
HMGB1P13-201ENST00000406019 PCLOQ9Y6V0 5065 aa0.84□□□□□ -2.27
HMGB1P13-201ENST00000406019 NBEAL1Q6ZS30 2694 aa0.84□□□□□ -2.28
HMGB1P13-201ENST00000406019 HRNRQ86YZ3 2850 aaPredicted RBP0.84□□□□□ -2.28
HMGB1P13-201ENST00000406019 MGAM2Q2M2H8 2515 aa0.83□□□□□ -2.28
HMGB1P13-201ENST00000406019 DEFB4AO15263 64 aa0.83□□□□□ -2.28
HMGB1P13-201ENST00000406019 DOPEY1Q5JWR5 2465 aa0.83□□□□□ -2.28
HMGB1P13-201ENST00000406019 STAB2Q8WWQ8 2551 aa0.83□□□□□ -2.28
HMGB1P13-201ENST00000406019 SYNE1Q8NF91 8797 aaKnown RBP0.82□□□□□ -2.28
Retrieved 100 of 20,778 RNA–protein pairs in 84.2 ms