RNA–Protein interactions for RNA: ENST00000394804.6

UBE2D3-209, Transcript of ubiquitin conjugating enzyme E2 D3, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene UBE2D3, Length 4,166 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE2D3-209ENST00000394804 FAT1Q14517 4588 aa6.2□□□□□ -1.42
UBE2D3-209ENST00000394804 BIRC6Q9NR09 4857 aa6.2□□□□□ -1.42
UBE2D3-209ENST00000394804 APOBP04114 4563 aaKnown RBP6.19□□□□□ -1.42
UBE2D3-209ENST00000394804 DNAH8Q96JB1 4490 aa6.16□□□□□ -1.42
UBE2D3-209ENST00000394804 H3BS24 57 aa6.16□□□□□ -1.42
UBE2D3-209ENST00000394804 RYR1P21817 5038 aa6.15□□□□□ -1.42
UBE2D3-209ENST00000394804 HSPG2P98160 4391 aa6.14□□□□□ -1.43
UBE2D3-209ENST00000394804 KRTAP17-1Q9BYP8 105 aa6.1□□□□□ -1.43
UBE2D3-209ENST00000394804 VPS13BQ7Z7G8 4022 aa6.08□□□□□ -1.44
UBE2D3-209ENST00000394804 KRTAP3-1Q9BYR8 98 aa6.08□□□□□ -1.44
UBE2D3-209ENST00000394804 KRTAP4-5Q9BYR2 181 aa6.08□□□□□ -1.44
UBE2D3-209ENST00000394804 J3QL48 77 aa6.07□□□□□ -1.44
UBE2D3-209ENST00000394804 XP32Q5T750 250 aa6.06□□□□□ -1.44
UBE2D3-209ENST00000394804 R4GN34 69 aa6.04□□□□□ -1.44
UBE2D3-209ENST00000394804 HERC2O95714 4834 aa6.03□□□□□ -1.44
UBE2D3-209ENST00000394804 ABCA13Q86UQ4 5058 aa6.01□□□□□ -1.45
UBE2D3-209ENST00000394804 M0QZ58 72 aa6□□□□□ -1.45
UBE2D3-209ENST00000394804 MYCBP2O75592 4640 aa5.99□□□□□ -1.45
UBE2D3-209ENST00000394804 SEC61BP60468 96 aaKnown RBP5.99□□□□□ -1.45
UBE2D3-209ENST00000394804 KRTAP10-8P60410 259 aa5.97□□□□□ -1.45
UBE2D3-209ENST00000394804 KRTAP10-4P60372 401 aaPredicted RBP5.96□□□□□ -1.46
UBE2D3-209ENST00000394804 LRP1Q07954 4544 aaKnown RBP5.95□□□□□ -1.46
UBE2D3-209ENST00000394804 PCLOQ9Y6V0 5065 aa5.95□□□□□ -1.46
UBE2D3-209ENST00000394804 P0C880 135 aa5.94□□□□□ -1.46
UBE2D3-209ENST00000394804 CAMK2N1Q7Z7J9 78 aa5.92□□□□□ -1.46
UBE2D3-209ENST00000394804 C10orf95Q9H7T3 257 aa5.89□□□□□ -1.47
UBE2D3-209ENST00000394804 KRTAP10-6P60371 365 aaPredicted RBP5.85□□□□□ -1.47
UBE2D3-209ENST00000394804 TPRXLQ17RH7 258 aa5.85□□□□□ -1.47
UBE2D3-209ENST00000394804 KRTAP13-4Q3LI77 160 aa5.81□□□□□ -1.48
UBE2D3-209ENST00000394804 FAT3Q8TDW7 4589 aa5.81□□□□□ -1.48
UBE2D3-209ENST00000394804 LUZP6Q538Z0 58 aa5.8□□□□□ -1.48
UBE2D3-209ENST00000394804 PKHD1L1Q86WI1 4243 aa5.79□□□□□ -1.48
UBE2D3-209ENST00000394804 KRTAP3-3Q9BYR6 98 aa5.78□□□□□ -1.48
UBE2D3-209ENST00000394804 HERC1Q15751 4861 aa5.78□□□□□ -1.48
UBE2D3-209ENST00000394804 NDUFAF8A1L188 74 aa5.77□□□□□ -1.49
UBE2D3-209ENST00000394804 KRTAP12-2P59991 146 aa5.77□□□□□ -1.49
UBE2D3-209ENST00000394804 MT1HL1P0DM35 61 aa5.76□□□□□ -1.49
UBE2D3-209ENST00000394804 KRTAP3-2Q9BYR7 98 aa5.74□□□□□ -1.49
UBE2D3-209ENST00000394804 KRTAP12-1P59990 96 aa5.73□□□□□ -1.49
UBE2D3-209ENST00000394804 TNXBP22105 4242 aa5.72□□□□□ -1.49
UBE2D3-209ENST00000394804 M0R2T5 61 aa5.6□□□□□ -1.51
UBE2D3-209ENST00000394804 PLAC4Q8WY50 150 aa5.58□□□□□ -1.52
UBE2D3-209ENST00000394804 PP632Q6XCG6 107 aa5.57□□□□□ -1.52
UBE2D3-209ENST00000394804 LPAP08519 4548 aa5.55□□□□□ -1.52
UBE2D3-209ENST00000394804 LRP2P98164 4655 aa5.55□□□□□ -1.52
UBE2D3-209ENST00000394804 A0A0A0MQY5 61 aa5.54□□□□□ -1.52
UBE2D3-209ENST00000394804 HMCN2Q8NDA2 5059 aa5.53□□□□□ -1.52
UBE2D3-209ENST00000394804 TNP1P09430 55 aa5.52□□□□□ -1.53
UBE2D3-209ENST00000394804 UBR4Q5T4S7 5183 aa5.48□□□□□ -1.53
UBE2D3-209ENST00000394804 KRTAP15-1Q3LI76 137 aa5.44□□□□□ -1.54
UBE2D3-209ENST00000394804 RNF213Q63HN8 5207 aa5.39□□□□□ -1.55
UBE2D3-209ENST00000394804 MUC2Q02817 5179 aa5.36□□□□□ -1.55
UBE2D3-209ENST00000394804 LORP23490 312 aaPredicted RBP5.28□□□□□ -1.56
UBE2D3-209ENST00000394804 KRTAP10-10P60014 251 aa5.19□□□□□ -1.58
UBE2D3-209ENST00000394804 KRTAP4-1Q9BYQ7 146 aa5.18□□□□□ -1.58
UBE2D3-209ENST00000394804 FAT4Q6V0I7 4981 aa5.15□□□□□ -1.59
UBE2D3-209ENST00000394804 MUC17Q685J3 4493 aa5.11□□□□□ -1.59
UBE2D3-209ENST00000394804 KRTAP23-1A1A580 65 aa5.05□□□□□ -1.6
UBE2D3-209ENST00000394804 PRO2289Q9P1D8 64 aa4.95□□□□□ -1.62
UBE2D3-209ENST00000394804 KRTAP19-2Q3LHN2 52 aa4.93□□□□□ -1.62
UBE2D3-209ENST00000394804 LCE2CQ5TA81 110 aa4.92□□□□□ -1.62
UBE2D3-209ENST00000394804 MT1HP80294 61 aa4.89□□□□□ -1.63
UBE2D3-209ENST00000394804 LCE3AQ5TA76 89 aa4.87□□□□□ -1.63
UBE2D3-209ENST00000394804 SPRR2GQ9BYE4 73 aa4.85□□□□□ -1.63
UBE2D3-209ENST00000394804 FLGP20930 4061 aaPredicted RBP4.84□□□□□ -1.63
UBE2D3-209ENST00000394804 LCE2AQ5TA79 106 aaPredicted RBP4.83□□□□□ -1.64
UBE2D3-209ENST00000394804 KRTAP10-12P60413 245 aa4.8□□□□□ -1.64
UBE2D3-209ENST00000394804 KRTAP12-3P60328 96 aa4.75□□□□□ -1.65
UBE2D3-209ENST00000394804 MT2AP02795 61 aa4.73□□□□□ -1.65
UBE2D3-209ENST00000394804 FSIP2Q5CZC0 6907 aa4.73□□□□□ -1.65
UBE2D3-209ENST00000394804 KRTAP19-1Q8IUB9 90 aa4.72□□□□□ -1.65
UBE2D3-209ENST00000394804 MT1FP04733 61 aa4.7□□□□□ -1.66
UBE2D3-209ENST00000394804 INE1O15225 51 aa4.66□□□□□ -1.66
UBE2D3-209ENST00000394804 KRTAP9-8Q9BYQ0 159 aa4.64□□□□□ -1.67
UBE2D3-209ENST00000394804 SPRR5A0A1B0GTR4 108 aa4.62□□□□□ -1.67
UBE2D3-209ENST00000394804 KRTAP8-1Q8IUC2 63 aa4.62□□□□□ -1.67
UBE2D3-209ENST00000394804 KRTAP19-8Q3LI54 63 aa4.58□□□□□ -1.68
UBE2D3-209ENST00000394804 KRTAP9-2Q9BYQ4 174 aa4.55□□□□□ -1.68
UBE2D3-209ENST00000394804 USH2AO75445 5202 aa4.54□□□□□ -1.68
UBE2D3-209ENST00000394804 MT1XP80297 61 aa4.48□□□□□ -1.69
UBE2D3-209ENST00000394804 MT1BP07438 61 aa4.48□□□□□ -1.69
UBE2D3-209ENST00000394804 KRTAP9-3Q9BYQ3 159 aa4.47□□□□□ -1.69
UBE2D3-209ENST00000394804 KRTAP10-5P60370 271 aa4.47□□□□□ -1.69
UBE2D3-209ENST00000394804 LCE2DQ5TA82 110 aaPredicted RBP4.44□□□□□ -1.7
UBE2D3-209ENST00000394804 LCE2BO14633 110 aa4.43□□□□□ -1.7
UBE2D3-209ENST00000394804 KRTAP10-7P60409 375 aaPredicted RBP4.43□□□□□ -1.7
UBE2D3-209ENST00000394804 KRTAP19-5Q3LI72 72 aa4.38□□□□□ -1.71
UBE2D3-209ENST00000394804 SSPOA2VEC9 5147 aa4.37□□□□□ -1.71
UBE2D3-209ENST00000394804 CRCT1Q9UGL9 99 aa4.34□□□□□ -1.71
UBE2D3-209ENST00000394804 LCE3CQ5T5A8 94 aa4.34□□□□□ -1.71
UBE2D3-209ENST00000394804 KRTAP9-6A0A140TA67 174 aa4.29□□□□□ -1.72
UBE2D3-209ENST00000394804 FCGBPQ9Y6R7 5405 aaPredicted RBP4.22□□□□□ -1.73
UBE2D3-209ENST00000394804 KRTAP19-4Q3LI73 84 aa4.17□□□□□ -1.74
UBE2D3-209ENST00000394804 MACF1Q9UPN3 7388 aaKnown RBP4.16□□□□□ -1.74
UBE2D3-209ENST00000394804 KRTAP19-6Q3LI70 58 aa4.16□□□□□ -1.74
UBE2D3-209ENST00000394804 KRTAP4-8A0A0G2JLE6 195 aa4.15□□□□□ -1.75
UBE2D3-209ENST00000394804 KRTAP4-8Q9BYQ9 185 aa4.15□□□□□ -1.75
UBE2D3-209ENST00000394804 SYNE2Q8WXH0 6885 aaKnown RBP4.13□□□□□ -1.75
UBE2D3-209ENST00000394804 KMT2DO14686 5537 aa4.06□□□□□ -1.76
UBE2D3-209ENST00000394804 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.01□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms