RNA–Protein interactions for RNA: ENST00000394331.3

HOXC6-202, Transcript of homeobox C6, humanhuman

TSL 1 (best) BASIC

Gene HOXC6, Length 2,943 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC6-202ENST00000394331 C9orf92A6NGG3 77 aa9.93□□□□□ -0.82
HOXC6-202ENST00000394331 DYNC1H1Q14204 4646 aaKnown RBP9.91□□□□□ -0.82
HOXC6-202ENST00000394331 KRTAP10-6P60371 365 aaPredicted RBP9.83□□□□□ -0.84
HOXC6-202ENST00000394331 PKHD1L1Q86WI1 4243 aa9.79□□□□□ -0.84
HOXC6-202ENST00000394331 C10orf95Q9H7T3 257 aa9.79□□□□□ -0.84
HOXC6-202ENST00000394331 APOBP04114 4563 aaKnown RBP9.78□□□□□ -0.84
HOXC6-202ENST00000394331 KRTAP13-4Q3LI77 160 aa9.78□□□□□ -0.84
HOXC6-202ENST00000394331 FAT1Q14517 4588 aa9.78□□□□□ -0.84
HOXC6-202ENST00000394331 A0A0D9SG42 100 aa9.69□□□□□ -0.86
HOXC6-202ENST00000394331 KRTAP3-2Q9BYR7 98 aa9.69□□□□□ -0.86
HOXC6-202ENST00000394331 S4R3F8 94 aa9.66□□□□□ -0.86
HOXC6-202ENST00000394331 KRTAP3-3Q9BYR6 98 aa9.64□□□□□ -0.87
HOXC6-202ENST00000394331 RYR2Q92736 4967 aa9.64□□□□□ -0.87
HOXC6-202ENST00000394331 KRTAP10-8P60410 259 aa9.63□□□□□ -0.87
HOXC6-202ENST00000394331 XP32Q5T750 250 aa9.59□□□□□ -0.87
HOXC6-202ENST00000394331 Q5VSD8 79 aa9.56□□□□□ -0.88
HOXC6-202ENST00000394331 KRTAP12-2P59991 146 aa9.54□□□□□ -0.88
HOXC6-202ENST00000394331 KRTAP12-1P59990 96 aa9.47□□□□□ -0.89
HOXC6-202ENST00000394331 FAT3Q8TDW7 4589 aa9.46□□□□□ -0.9
HOXC6-202ENST00000394331 KMT2CQ8NEZ4 4911 aaKnown RBP9.45□□□□□ -0.9
HOXC6-202ENST00000394331 TNXBP22105 4242 aa9.43□□□□□ -0.9
HOXC6-202ENST00000394331 LUZP6Q538Z0 58 aa9.42□□□□□ -0.9
HOXC6-202ENST00000394331 LRP1Q07954 4544 aaKnown RBP9.39□□□□□ -0.91
HOXC6-202ENST00000394331 DMBT1Q9UGM3 2413 aaPredicted RBP9.36□□□□□ -0.91
HOXC6-202ENST00000394331 HSPG2P98160 4391 aa9.35□□□□□ -0.91
HOXC6-202ENST00000394331 MT1HL1P0DM35 61 aa9.29□□□□□ -0.92
HOXC6-202ENST00000394331 M0QZ58 72 aa9.28□□□□□ -0.92
HOXC6-202ENST00000394331 RYR1P21817 5038 aa9.27□□□□□ -0.92
HOXC6-202ENST00000394331 KRTAP17-1Q9BYP8 105 aa9.27□□□□□ -0.93
HOXC6-202ENST00000394331 PLAC4Q8WY50 150 aa9.22□□□□□ -0.93
HOXC6-202ENST00000394331 SEC61BP60468 96 aaKnown RBP9.17□□□□□ -0.94
HOXC6-202ENST00000394331 RYR3Q15413 4870 aa9.13□□□□□ -0.95
HOXC6-202ENST00000394331 MYCBP2O75592 4640 aa9.12□□□□□ -0.95
HOXC6-202ENST00000394331 KIAA1109Q2LD37 5005 aa9.09□□□□□ -0.95
HOXC6-202ENST00000394331 LCE2DQ5TA82 110 aaPredicted RBP8.96□□□□□ -0.98
HOXC6-202ENST00000394331 PP632Q6XCG6 107 aa8.91□□□□□ -0.98
HOXC6-202ENST00000394331 LRP2P98164 4655 aa8.87□□□□□ -0.99
HOXC6-202ENST00000394331 KRTAP4-5Q9BYR2 181 aa8.83□□□□□ -1
HOXC6-202ENST00000394331 LPAP08519 4548 aa8.82□□□□□ -1
HOXC6-202ENST00000394331 EPPK1P58107 5090 aaKnown RBP8.81□□□□□ -1
HOXC6-202ENST00000394331 R4GN34 69 aa8.76□□□□□ -1.01
HOXC6-202ENST00000394331 ABCA13Q86UQ4 5058 aa8.69□□□□□ -1.02
HOXC6-202ENST00000394331 SPRR5A0A1B0GTR4 108 aa8.6□□□□□ -1.03
HOXC6-202ENST00000394331 KRTAP4-1Q9BYQ7 146 aa8.59□□□□□ -1.03
HOXC6-202ENST00000394331 MUC17Q685J3 4493 aa8.52□□□□□ -1.05
HOXC6-202ENST00000394331 KRTAP23-1A1A580 65 aa8.5□□□□□ -1.05
HOXC6-202ENST00000394331 CAMK2N1Q7Z7J9 78 aa8.5□□□□□ -1.05
HOXC6-202ENST00000394331 KRTAP19-2Q3LHN2 52 aa8.46□□□□□ -1.06
HOXC6-202ENST00000394331 LORP23490 312 aaPredicted RBP8.44□□□□□ -1.06
HOXC6-202ENST00000394331 PRO2289Q9P1D8 64 aa8.41□□□□□ -1.06
HOXC6-202ENST00000394331 HERC2O95714 4834 aa8.4□□□□□ -1.07
HOXC6-202ENST00000394331 BIRC6Q9NR09 4857 aa8.35□□□□□ -1.07
HOXC6-202ENST00000394331 LCE2CQ5TA81 110 aa8.3□□□□□ -1.08
HOXC6-202ENST00000394331 LCE2AQ5TA79 106 aaPredicted RBP8.3□□□□□ -1.08
HOXC6-202ENST00000394331 TNP1P09430 55 aa8.25□□□□□ -1.09
HOXC6-202ENST00000394331 INE1O15225 51 aa8.21□□□□□ -1.09
HOXC6-202ENST00000394331 FLGP20930 4061 aaPredicted RBP8.12□□□□□ -1.11
HOXC6-202ENST00000394331 LCE2BO14633 110 aa8.09□□□□□ -1.11
HOXC6-202ENST00000394331 MUC2Q02817 5179 aa8.05□□□□□ -1.12
HOXC6-202ENST00000394331 HERC1Q15751 4861 aa7.96□□□□□ -1.14
HOXC6-202ENST00000394331 HMCN2Q8NDA2 5059 aa7.95□□□□□ -1.14
HOXC6-202ENST00000394331 PCLOQ9Y6V0 5065 aa7.95□□□□□ -1.14
HOXC6-202ENST00000394331 SPRR2GQ9BYE4 73 aa7.85□□□□□ -1.15
HOXC6-202ENST00000394331 M0R2T5 61 aa7.82□□□□□ -1.16
HOXC6-202ENST00000394331 KRTAP19-1Q8IUB9 90 aa7.77□□□□□ -1.17
HOXC6-202ENST00000394331 MT1HP80294 61 aa7.76□□□□□ -1.17
HOXC6-202ENST00000394331 FAT4Q6V0I7 4981 aa7.69□□□□□ -1.18
HOXC6-202ENST00000394331 LCE3AQ5TA76 89 aa7.66□□□□□ -1.18
HOXC6-202ENST00000394331 KRTAP10-10P60014 251 aa7.65□□□□□ -1.18
HOXC6-202ENST00000394331 MT2AP02795 61 aa7.64□□□□□ -1.19
HOXC6-202ENST00000394331 MT1FP04733 61 aa7.62□□□□□ -1.19
HOXC6-202ENST00000394331 RNF213Q63HN8 5207 aa7.6□□□□□ -1.19
HOXC6-202ENST00000394331 KRTAP8-1Q8IUC2 63 aa7.59□□□□□ -1.19
HOXC6-202ENST00000394331 KRTAP9-8Q9BYQ0 159 aa7.59□□□□□ -1.19
HOXC6-202ENST00000394331 UBR4Q5T4S7 5183 aa7.52□□□□□ -1.21
HOXC6-202ENST00000394331 KRTAP19-8Q3LI54 63 aa7.52□□□□□ -1.21
HOXC6-202ENST00000394331 MT1BP07438 61 aa7.38□□□□□ -1.23
HOXC6-202ENST00000394331 KRTAP10-12P60413 245 aa7.37□□□□□ -1.23
HOXC6-202ENST00000394331 KRTAP10-5P60370 271 aa7.32□□□□□ -1.24
HOXC6-202ENST00000394331 MT1XP80297 61 aa7.31□□□□□ -1.24
HOXC6-202ENST00000394331 KRTAP12-3P60328 96 aa7.3□□□□□ -1.24
HOXC6-202ENST00000394331 KRTAP9-3Q9BYQ3 159 aa7.28□□□□□ -1.24
HOXC6-202ENST00000394331 KRTAP10-7P60409 375 aaPredicted RBP7.08□□□□□ -1.28
HOXC6-202ENST00000394331 LCE3CQ5T5A8 94 aa6.94□□□□□ -1.3
HOXC6-202ENST00000394331 KRTAP2-3P0C7H8 128 aa6.86□□□□□ -1.31
HOXC6-202ENST00000394331 KRTAP2-4Q9BYR9 128 aa6.86□□□□□ -1.31
HOXC6-202ENST00000394331 KRTAP2-1Q9BYU5 128 aa6.86□□□□□ -1.31
HOXC6-202ENST00000394331 KRTAP19-5Q3LI72 72 aa6.8□□□□□ -1.32
HOXC6-202ENST00000394331 KRTAP9-6A8MVA2 160 aa6.7□□□□□ -1.34
HOXC6-202ENST00000394331 KRTAP4-8A0A0G2JLE6 195 aa6.63□□□□□ -1.35
HOXC6-202ENST00000394331 KRTAP4-8Q9BYQ9 185 aa6.63□□□□□ -1.35
HOXC6-202ENST00000394331 USH2AO75445 5202 aa6.62□□□□□ -1.35
HOXC6-202ENST00000394331 KRTAP19-4Q3LI73 84 aa6.56□□□□□ -1.36
HOXC6-202ENST00000394331 KRTAP19-7Q3SYF9 63 aa6.52□□□□□ -1.37
HOXC6-202ENST00000394331 KMT2DO14686 5537 aa6.48□□□□□ -1.37
HOXC6-202ENST00000394331 MT1EP04732 61 aa6.35□□□□□ -1.39
HOXC6-202ENST00000394331 MT1LQ93083 61 aa6.33□□□□□ -1.4
HOXC6-202ENST00000394331 KRTAP19-6Q3LI70 58 aa6.32□□□□□ -1.4
HOXC6-202ENST00000394331 KRTAP4-7Q9BYR0 210 aa6.29□□□□□ -1.4
HOXC6-202ENST00000394331 SSPOA2VEC9 5147 aa6.29□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms