RNA–Protein interactions for RNA: ENST00000394269.7

TCOF1-203, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TCOF1, Length 3,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-203ENST00000394269 A0A1B0GU69 56 aa5.92□□□□□ -1.46
TCOF1-203ENST00000394269 MT1HL1P0DM35 61 aa5.92□□□□□ -1.46
TCOF1-203ENST00000394269 PRAC1Q96KF2 57 aa5.91□□□□□ -1.46
TCOF1-203ENST00000394269 XP32Q5T750 250 aa5.89□□□□□ -1.47
TCOF1-203ENST00000394269 A6NN06 94 aa5.87□□□□□ -1.47
TCOF1-203ENST00000394269 RNF213Q63HN8 5207 aa5.87□□□□□ -1.47
TCOF1-203ENST00000394269 BIRC6Q9NR09 4857 aa5.87□□□□□ -1.47
TCOF1-203ENST00000394269 KRTAP3-1Q9BYR8 98 aa5.86□□□□□ -1.47
TCOF1-203ENST00000394269 CDC42SE1Q9NRR8 79 aa5.86□□□□□ -1.47
TCOF1-203ENST00000394269 LRP2P98164 4655 aa5.86□□□□□ -1.47
TCOF1-203ENST00000394269 RPL37P61927 97 aaKnown RBP5.84□□□□□ -1.47
TCOF1-203ENST00000394269 MUC2Q02817 5179 aa5.83□□□□□ -1.48
TCOF1-203ENST00000394269 ADM2Q7Z4H4 148 aa5.82□□□□□ -1.48
TCOF1-203ENST00000394269 LPAP08519 4548 aa5.81□□□□□ -1.48
TCOF1-203ENST00000394269 COX6B2Q6YFQ2 88 aa5.8□□□□□ -1.48
TCOF1-203ENST00000394269 UBR4Q5T4S7 5183 aa5.79□□□□□ -1.48
TCOF1-203ENST00000394269 UQCR11O14957 56 aa5.74□□□□□ -1.49
TCOF1-203ENST00000394269 MIR22HGQ0VDD5 57 aa5.73□□□□□ -1.49
TCOF1-203ENST00000394269 LINC01554Q52M75 96 aa5.72□□□□□ -1.49
TCOF1-203ENST00000394269 TPRXLQ17RH7 258 aa5.68□□□□□ -1.5
TCOF1-203ENST00000394269 S4R3F8 94 aa5.65□□□□□ -1.5
TCOF1-203ENST00000394269 SPATA8Q6RVD6 105 aa5.65□□□□□ -1.5
TCOF1-203ENST00000394269 A0A1B0GU33 70 aa5.65□□□□□ -1.51
TCOF1-203ENST00000394269 FSIP2Q5CZC0 6907 aa5.62□□□□□ -1.51
TCOF1-203ENST00000394269 SEC61BP60468 96 aaKnown RBP5.61□□□□□ -1.51
TCOF1-203ENST00000394269 CSAG1Q6PB30 78 aa5.61□□□□□ -1.51
TCOF1-203ENST00000394269 KRTAP3-3Q9BYR6 98 aa5.6□□□□□ -1.51
TCOF1-203ENST00000394269 H1FX-AS1Q4G0G2 97 aa5.59□□□□□ -1.51
TCOF1-203ENST00000394269 H0YAA0 97 aa5.58□□□□□ -1.52
TCOF1-203ENST00000394269 A0A0D9SG42 100 aa5.57□□□□□ -1.52
TCOF1-203ENST00000394269 FAT4Q6V0I7 4981 aa5.54□□□□□ -1.52
TCOF1-203ENST00000394269 P0C880 135 aa5.52□□□□□ -1.53
TCOF1-203ENST00000394269 CRIPTQ9P021 101 aa5.5□□□□□ -1.53
TCOF1-203ENST00000394269 KRTAP4-1Q9BYQ7 146 aa5.49□□□□□ -1.53
TCOF1-203ENST00000394269 KRTAP10-6P60371 365 aaPredicted RBP5.49□□□□□ -1.53
TCOF1-203ENST00000394269 M0R2T5 61 aa5.48□□□□□ -1.53
TCOF1-203ENST00000394269 KRTAP13-4Q3LI77 160 aa5.45□□□□□ -1.54
TCOF1-203ENST00000394269 KRTAP3-2Q9BYR7 98 aa5.45□□□□□ -1.54
TCOF1-203ENST00000394269 LUZP6Q538Z0 58 aa5.44□□□□□ -1.54
TCOF1-203ENST00000394269 K7ERS5 55 aa5.42□□□□□ -1.54
TCOF1-203ENST00000394269 SPINT4Q6UDR6 99 aa5.38□□□□□ -1.55
TCOF1-203ENST00000394269 MUC17Q685J3 4493 aa5.36□□□□□ -1.55
TCOF1-203ENST00000394269 HMCN2Q8NDA2 5059 aa5.32□□□□□ -1.56
TCOF1-203ENST00000394269 M0QZ58 72 aa5.32□□□□□ -1.56
TCOF1-203ENST00000394269 R4GN34 69 aa5.31□□□□□ -1.56
TCOF1-203ENST00000394269 ROMO1P60602 79 aa5.29□□□□□ -1.56
TCOF1-203ENST00000394269 KRTAP12-2P59991 146 aa5.27□□□□□ -1.57
TCOF1-203ENST00000394269 NDUFAF8A1L188 74 aa5.26□□□□□ -1.57
TCOF1-203ENST00000394269 LORP23490 312 aaPredicted RBP5.26□□□□□ -1.57
TCOF1-203ENST00000394269 KRTAP25-1Q3LHN0 102 aa5.24□□□□□ -1.57
TCOF1-203ENST00000394269 KRTAP19-2Q3LHN2 52 aa5.21□□□□□ -1.58
TCOF1-203ENST00000394269 KRTAP12-1P59990 96 aa5.2□□□□□ -1.58
TCOF1-203ENST00000394269 FLGP20930 4061 aaPredicted RBP5.15□□□□□ -1.58
TCOF1-203ENST00000394269 C10orf95Q9H7T3 257 aa5.13□□□□□ -1.59
TCOF1-203ENST00000394269 USH2AO75445 5202 aa5.06□□□□□ -1.6
TCOF1-203ENST00000394269 CAMK2N1Q7Z7J9 78 aa5.06□□□□□ -1.6
TCOF1-203ENST00000394269 LCE2CQ5TA81 110 aa5.05□□□□□ -1.6
TCOF1-203ENST00000394269 MT1HP80294 61 aa4.98□□□□□ -1.61
TCOF1-203ENST00000394269 KRTAP10-10P60014 251 aa4.97□□□□□ -1.61
TCOF1-203ENST00000394269 MT1FP04733 61 aa4.86□□□□□ -1.63
TCOF1-203ENST00000394269 KRTAP15-1Q3LI76 137 aa4.85□□□□□ -1.63
TCOF1-203ENST00000394269 PLAC4Q8WY50 150 aa4.85□□□□□ -1.63
TCOF1-203ENST00000394269 MT2AP02795 61 aa4.85□□□□□ -1.63
TCOF1-203ENST00000394269 KRTAP23-1A1A580 65 aa4.82□□□□□ -1.64
TCOF1-203ENST00000394269 KRTAP19-1Q8IUB9 90 aa4.82□□□□□ -1.64
TCOF1-203ENST00000394269 KRTAP9-8Q9BYQ0 159 aa4.81□□□□□ -1.64
TCOF1-203ENST00000394269 SPRR2GQ9BYE4 73 aa4.78□□□□□ -1.64
TCOF1-203ENST00000394269 TNP1P09430 55 aa4.74□□□□□ -1.65
TCOF1-203ENST00000394269 KRTAP9-3Q9BYQ3 159 aa4.6□□□□□ -1.67
TCOF1-203ENST00000394269 PP632Q6XCG6 107 aa4.6□□□□□ -1.67
TCOF1-203ENST00000394269 MT1BP07438 61 aa4.6□□□□□ -1.67
TCOF1-203ENST00000394269 KMT2DO14686 5537 aa4.59□□□□□ -1.67
TCOF1-203ENST00000394269 LCE2DQ5TA82 110 aaPredicted RBP4.59□□□□□ -1.68
TCOF1-203ENST00000394269 KRTAP19-8Q3LI54 63 aa4.57□□□□□ -1.68
TCOF1-203ENST00000394269 SSPOA2VEC9 5147 aa4.54□□□□□ -1.68
TCOF1-203ENST00000394269 LCE3AQ5TA76 89 aa4.52□□□□□ -1.69
TCOF1-203ENST00000394269 MT1XP80297 61 aa4.52□□□□□ -1.69
TCOF1-203ENST00000394269 LCE2AQ5TA79 106 aaPredicted RBP4.52□□□□□ -1.69
TCOF1-203ENST00000394269 KRTAP10-5P60370 271 aa4.52□□□□□ -1.69
TCOF1-203ENST00000394269 SYNE2Q8WXH0 6885 aaKnown RBP4.51□□□□□ -1.69
TCOF1-203ENST00000394269 LCE2BO14633 110 aa4.51□□□□□ -1.69
TCOF1-203ENST00000394269 KRTAP9-2Q9BYQ4 174 aa4.46□□□□□ -1.69
TCOF1-203ENST00000394269 DSTQ03001 7570 aaKnown RBP4.46□□□□□ -1.7
TCOF1-203ENST00000394269 KRTAP10-7P60409 375 aaPredicted RBP4.44□□□□□ -1.7
TCOF1-203ENST00000394269 PRO2289Q9P1D8 64 aa4.44□□□□□ -1.7
TCOF1-203ENST00000394269 OBSCNQ5VST9 7968 aa4.42□□□□□ -1.7
TCOF1-203ENST00000394269 KRTAP10-12P60413 245 aa4.41□□□□□ -1.7
TCOF1-203ENST00000394269 MACF1Q9UPN3 7388 aaKnown RBP4.38□□□□□ -1.71
TCOF1-203ENST00000394269 KRTAP12-3P60328 96 aa4.31□□□□□ -1.72
TCOF1-203ENST00000394269 FCGBPQ9Y6R7 5405 aaPredicted RBP4.3□□□□□ -1.72
TCOF1-203ENST00000394269 KRTAP4-8A0A0G2JLE6 195 aa4.29□□□□□ -1.72
TCOF1-203ENST00000394269 KRTAP4-8Q9BYQ9 185 aa4.29□□□□□ -1.72
TCOF1-203ENST00000394269 KRTAP8-1Q8IUC2 63 aa4.29□□□□□ -1.72
TCOF1-203ENST00000394269 MUC12Q9UKN1 5478 aa4.26□□□□□ -1.73
TCOF1-203ENST00000394269 SPRR5A0A1B0GTR4 108 aa4.26□□□□□ -1.73
TCOF1-203ENST00000394269 CRCT1Q9UGL9 99 aa4.25□□□□□ -1.73
TCOF1-203ENST00000394269 KRTAP19-5Q3LI72 72 aa4.22□□□□□ -1.73
TCOF1-203ENST00000394269 SYNE1Q8NF91 8797 aaKnown RBP4.14□□□□□ -1.75
TCOF1-203ENST00000394269 KRTAP9-6A0A140TA67 174 aa4.12□□□□□ -1.75
TCOF1-203ENST00000394269 MDN1Q9NU22 5596 aa4.08□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 80.4 ms