RNA–Protein interactions for RNA: ENST00000392456.3

CCDC50-202, Transcript of coiled-coil domain containing 50, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CCDC50, Length 2,454 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC50-202ENST00000392456 NDUFAF8A1L188 74 aa10.61□□□□□ -0.71
CCDC50-202ENST00000392456 SPINK1P00995 79 aa10.57□□□□□ -0.72
CCDC50-202ENST00000392456 KRTAP4-5Q9BYR2 181 aa10.57□□□□□ -0.72
CCDC50-202ENST00000392456 DMBT1Q9UGM3 2413 aaPredicted RBP10.55□□□□□ -0.72
CCDC50-202ENST00000392456 H0YAA0 97 aa10.55□□□□□ -0.72
CCDC50-202ENST00000392456 CRIPTQ9P021 101 aa10.55□□□□□ -0.72
CCDC50-202ENST00000392456 KRTAP10-8P60410 259 aa10.51□□□□□ -0.73
CCDC50-202ENST00000392456 BIRC6Q9NR09 4857 aa10.5□□□□□ -0.73
CCDC50-202ENST00000392456 ABCA13Q86UQ4 5058 aa10.48□□□□□ -0.73
CCDC50-202ENST00000392456 SPINT4Q6UDR6 99 aa10.47□□□□□ -0.73
CCDC50-202ENST00000392456 IGKV2-30P06310 120 aa10.45□□□□□ -0.74
CCDC50-202ENST00000392456 RPS29P62273 56 aaKnown RBP10.44□□□□□ -0.74
CCDC50-202ENST00000392456 KRTAP15-1Q3LI76 137 aa10.44□□□□□ -0.74
CCDC50-202ENST00000392456 MT1HL1P0DM35 61 aa10.42□□□□□ -0.74
CCDC50-202ENST00000392456 HERC2O95714 4834 aa10.4□□□□□ -0.74
CCDC50-202ENST00000392456 IGKV2D-30A0A075B6S6 120 aa10.29□□□□□ -0.76
CCDC50-202ENST00000392456 C9orf92A6NGG3 77 aa10.25□□□□□ -0.77
CCDC50-202ENST00000392456 A0A1B0GU33 70 aa10.24□□□□□ -0.77
CCDC50-202ENST00000392456 TPRXLQ17RH7 258 aa10.22□□□□□ -0.77
CCDC50-202ENST00000392456 LUZP6Q538Z0 58 aa10.21□□□□□ -0.77
CCDC50-202ENST00000392456 K7ERS5 55 aa10.2□□□□□ -0.78
CCDC50-202ENST00000392456 H1FX-AS1Q4G0G2 97 aa10.18□□□□□ -0.78
CCDC50-202ENST00000392456 PCLOQ9Y6V0 5065 aa10.16□□□□□ -0.78
CCDC50-202ENST00000392456 LPAP08519 4548 aa10.06□□□□□ -0.8
CCDC50-202ENST00000392456 J3QL48 77 aa10.03□□□□□ -0.8
CCDC50-202ENST00000392456 LRP2P98164 4655 aa9.99□□□□□ -0.81
CCDC50-202ENST00000392456 C10orf95Q9H7T3 257 aa9.98□□□□□ -0.81
CCDC50-202ENST00000392456 HERC1Q15751 4861 aa9.96□□□□□ -0.81
CCDC50-202ENST00000392456 XP32Q5T750 250 aa9.95□□□□□ -0.82
CCDC50-202ENST00000392456 COX6B2Q6YFQ2 88 aa9.89□□□□□ -0.83
CCDC50-202ENST00000392456 SEC61BP60468 96 aaKnown RBP9.87□□□□□ -0.83
CCDC50-202ENST00000392456 RPL37P61927 97 aaKnown RBP9.84□□□□□ -0.83
CCDC50-202ENST00000392456 HMCN2Q8NDA2 5059 aa9.72□□□□□ -0.85
CCDC50-202ENST00000392456 KRTAP3-1Q9BYR8 98 aa9.66□□□□□ -0.86
CCDC50-202ENST00000392456 MUC2Q02817 5179 aa9.61□□□□□ -0.87
CCDC50-202ENST00000392456 KRTAP13-4Q3LI77 160 aa9.59□□□□□ -0.87
CCDC50-202ENST00000392456 A0A0D9SG42 100 aa9.57□□□□□ -0.88
CCDC50-202ENST00000392456 KRTAP4-1Q9BYQ7 146 aa9.5□□□□□ -0.89
CCDC50-202ENST00000392456 MUC17Q685J3 4493 aa9.49□□□□□ -0.89
CCDC50-202ENST00000392456 KRTAP10-6P60371 365 aaPredicted RBP9.49□□□□□ -0.89
CCDC50-202ENST00000392456 KRTAP3-2Q9BYR7 98 aa9.47□□□□□ -0.89
CCDC50-202ENST00000392456 S4R3F8 94 aa9.47□□□□□ -0.89
CCDC50-202ENST00000392456 UBR4Q5T4S7 5183 aa9.45□□□□□ -0.9
CCDC50-202ENST00000392456 KRTAP12-2P59991 146 aa9.37□□□□□ -0.91
CCDC50-202ENST00000392456 RNF213Q63HN8 5207 aa9.34□□□□□ -0.91
CCDC50-202ENST00000392456 PLAC4Q8WY50 150 aa9.33□□□□□ -0.92
CCDC50-202ENST00000392456 KRTAP12-1P59990 96 aa9.22□□□□□ -0.93
CCDC50-202ENST00000392456 KRTAP3-3Q9BYR6 98 aa9.22□□□□□ -0.93
CCDC50-202ENST00000392456 KRTAP19-2Q3LHN2 52 aa9.21□□□□□ -0.94
CCDC50-202ENST00000392456 FAT4Q6V0I7 4981 aa9.16□□□□□ -0.94
CCDC50-202ENST00000392456 CAMK2N1Q7Z7J9 78 aa9.14□□□□□ -0.95
CCDC50-202ENST00000392456 FLGP20930 4061 aaPredicted RBP9.06□□□□□ -0.96
CCDC50-202ENST00000392456 LCE2CQ5TA81 110 aa8.98□□□□□ -0.97
CCDC50-202ENST00000392456 PRO2289Q9P1D8 64 aa8.9□□□□□ -0.99
CCDC50-202ENST00000392456 M0QZ58 72 aa8.76□□□□□ -1.01
CCDC50-202ENST00000392456 MT1HP80294 61 aa8.76□□□□□ -1.01
CCDC50-202ENST00000392456 M0R2T5 61 aa8.65□□□□□ -1.02
CCDC50-202ENST00000392456 LORP23490 312 aaPredicted RBP8.65□□□□□ -1.02
CCDC50-202ENST00000392456 PP632Q6XCG6 107 aa8.61□□□□□ -1.03
CCDC50-202ENST00000392456 SPRR5A0A1B0GTR4 108 aa8.56□□□□□ -1.04
CCDC50-202ENST00000392456 R4GN34 69 aa8.49□□□□□ -1.05
CCDC50-202ENST00000392456 INE1O15225 51 aa8.46□□□□□ -1.05
CCDC50-202ENST00000392456 KRTAP9-8Q9BYQ0 159 aa8.46□□□□□ -1.05
CCDC50-202ENST00000392456 MT2AP02795 61 aa8.43□□□□□ -1.06
CCDC50-202ENST00000392456 MT1FP04733 61 aa8.41□□□□□ -1.06
CCDC50-202ENST00000392456 LCE2AQ5TA79 106 aaPredicted RBP8.39□□□□□ -1.07
CCDC50-202ENST00000392456 KRTAP10-10P60014 251 aa8.34□□□□□ -1.07
CCDC50-202ENST00000392456 KRTAP19-1Q8IUB9 90 aa8.27□□□□□ -1.09
CCDC50-202ENST00000392456 SPRR2GQ9BYE4 73 aa8.21□□□□□ -1.1
CCDC50-202ENST00000392456 KRTAP9-3Q9BYQ3 159 aa8.14□□□□□ -1.11
CCDC50-202ENST00000392456 KRTAP23-1A1A580 65 aa8.04□□□□□ -1.12
CCDC50-202ENST00000392456 USH2AO75445 5202 aa8.02□□□□□ -1.13
CCDC50-202ENST00000392456 KRTAP19-8Q3LI54 63 aa7.97□□□□□ -1.13
CCDC50-202ENST00000392456 LCE2BO14633 110 aa7.96□□□□□ -1.13
CCDC50-202ENST00000392456 MT1BP07438 61 aa7.95□□□□□ -1.14
CCDC50-202ENST00000392456 TNP1P09430 55 aa7.86□□□□□ -1.15
CCDC50-202ENST00000392456 FSIP2Q5CZC0 6907 aa7.78□□□□□ -1.16
CCDC50-202ENST00000392456 MT1XP80297 61 aa7.7□□□□□ -1.18
CCDC50-202ENST00000392456 KRTAP10-5P60370 271 aa7.69□□□□□ -1.18
CCDC50-202ENST00000392456 SSPOA2VEC9 5147 aa7.66□□□□□ -1.18
CCDC50-202ENST00000392456 LCE2DQ5TA82 110 aaPredicted RBP7.51□□□□□ -1.21
CCDC50-202ENST00000392456 KRTAP10-7P60409 375 aaPredicted RBP7.44□□□□□ -1.22
CCDC50-202ENST00000392456 KMT2DO14686 5537 aa7.43□□□□□ -1.22
CCDC50-202ENST00000392456 KRTAP19-6Q3LI70 58 aa7.35□□□□□ -1.23
CCDC50-202ENST00000392456 LCE3AQ5TA76 89 aa7.34□□□□□ -1.24
CCDC50-202ENST00000392456 FCGBPQ9Y6R7 5405 aaPredicted RBP7.32□□□□□ -1.24
CCDC50-202ENST00000392456 KRTAP9-2Q9BYQ4 174 aa7.32□□□□□ -1.24
CCDC50-202ENST00000392456 KRTAP10-12P60413 245 aa7.25□□□□□ -1.25
CCDC50-202ENST00000392456 KRTAP4-8A0A0G2JLE6 195 aa7.2□□□□□ -1.26
CCDC50-202ENST00000392456 KRTAP4-8Q9BYQ9 185 aa7.2□□□□□ -1.26
CCDC50-202ENST00000392456 KRTAP8-1Q8IUC2 63 aa7.17□□□□□ -1.26
CCDC50-202ENST00000392456 CRCT1Q9UGL9 99 aa7.03□□□□□ -1.28
CCDC50-202ENST00000392456 MACF1Q9UPN3 7388 aaKnown RBP6.98□□□□□ -1.29
CCDC50-202ENST00000392456 KRTAP19-5Q3LI72 72 aa6.97□□□□□ -1.29
CCDC50-202ENST00000392456 KRTAP12-3P60328 96 aa6.96□□□□□ -1.29
CCDC50-202ENST00000392456 KRTAP19-7Q3SYF9 63 aa6.88□□□□□ -1.31
CCDC50-202ENST00000392456 SYNE2Q8WXH0 6885 aaKnown RBP6.86□□□□□ -1.31
CCDC50-202ENST00000392456 MUC12Q9UKN1 5478 aa6.81□□□□□ -1.32
CCDC50-202ENST00000392456 MT1EP04732 61 aa6.72□□□□□ -1.33
CCDC50-202ENST00000392456 KRTAP2-3P0C7H8 128 aa6.7□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 8.5 ms