RNA–Protein interactions for RNA: ENST00000389805.8

SQSTM1-202, Transcript of sequestosome 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SQSTM1, Length 2,986 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-202ENST00000389805 C20orf166-AS1Q96NR2 134 aa9.39□□□□□ -0.91
SQSTM1-202ENST00000389805 COX6B2Q6YFQ2 88 aa9.38□□□□□ -0.91
SQSTM1-202ENST00000389805 HSPG2P98160 4391 aa9.34□□□□□ -0.91
SQSTM1-202ENST00000389805 RYR3Q15413 4870 aa9.34□□□□□ -0.91
SQSTM1-202ENST00000389805 TNXBP22105 4242 aa9.33□□□□□ -0.92
SQSTM1-202ENST00000389805 A0A0D9SG42 100 aa9.29□□□□□ -0.92
SQSTM1-202ENST00000389805 KRTAP17-1Q9BYP8 105 aa9.29□□□□□ -0.92
SQSTM1-202ENST00000389805 FAT3Q8TDW7 4589 aa9.27□□□□□ -0.92
SQSTM1-202ENST00000389805 Q5VSD8 79 aa9.27□□□□□ -0.92
SQSTM1-202ENST00000389805 MYCBP2O75592 4640 aa9.27□□□□□ -0.93
SQSTM1-202ENST00000389805 SPINT4Q6UDR6 99 aa9.26□□□□□ -0.93
SQSTM1-202ENST00000389805 KRTAP10-8P60410 259 aa9.23□□□□□ -0.93
SQSTM1-202ENST00000389805 C10orf95Q9H7T3 257 aa9.21□□□□□ -0.94
SQSTM1-202ENST00000389805 TPRXLQ17RH7 258 aa9.21□□□□□ -0.94
SQSTM1-202ENST00000389805 KIAA1109Q2LD37 5005 aa9.2□□□□□ -0.94
SQSTM1-202ENST00000389805 RYR1P21817 5038 aa9.19□□□□□ -0.94
SQSTM1-202ENST00000389805 KRTAP13-4Q3LI77 160 aa9.18□□□□□ -0.94
SQSTM1-202ENST00000389805 RPL37P61927 97 aaKnown RBP9.18□□□□□ -0.94
SQSTM1-202ENST00000389805 KRTAP10-6P60371 365 aaPredicted RBP9.11□□□□□ -0.95
SQSTM1-202ENST00000389805 NDUFAF8A1L188 74 aa9.07□□□□□ -0.96
SQSTM1-202ENST00000389805 XP32Q5T750 250 aa9.04□□□□□ -0.96
SQSTM1-202ENST00000389805 EPPK1P58107 5090 aaKnown RBP9.02□□□□□ -0.96
SQSTM1-202ENST00000389805 KRTAP3-3Q9BYR6 98 aa9.02□□□□□ -0.97
SQSTM1-202ENST00000389805 MT1HL1P0DM35 61 aa9.01□□□□□ -0.97
SQSTM1-202ENST00000389805 A0A0A0MQY5 61 aa9□□□□□ -0.97
SQSTM1-202ENST00000389805 KRTAP3-2Q9BYR7 98 aa8.99□□□□□ -0.97
SQSTM1-202ENST00000389805 LPAP08519 4548 aa8.97□□□□□ -0.97
SQSTM1-202ENST00000389805 KRTAP15-1Q3LI76 137 aa8.94□□□□□ -0.98
SQSTM1-202ENST00000389805 S4R3F8 94 aa8.92□□□□□ -0.98
SQSTM1-202ENST00000389805 KRTAP12-2P59991 146 aa8.92□□□□□ -0.98
SQSTM1-202ENST00000389805 LRP2P98164 4655 aa8.9□□□□□ -0.98
SQSTM1-202ENST00000389805 ABCA13Q86UQ4 5058 aa8.86□□□□□ -0.99
SQSTM1-202ENST00000389805 KRTAP4-5Q9BYR2 181 aa8.83□□□□□ -1
SQSTM1-202ENST00000389805 KRTAP12-1P59990 96 aa8.76□□□□□ -1.01
SQSTM1-202ENST00000389805 HERC2O95714 4834 aa8.49□□□□□ -1.05
SQSTM1-202ENST00000389805 M0QZ58 72 aa8.46□□□□□ -1.05
SQSTM1-202ENST00000389805 J3QL48 77 aa8.43□□□□□ -1.06
SQSTM1-202ENST00000389805 KRTAP4-1Q9BYQ7 146 aa8.42□□□□□ -1.06
SQSTM1-202ENST00000389805 MUC17Q685J3 4493 aa8.4□□□□□ -1.06
SQSTM1-202ENST00000389805 MUC2Q02817 5179 aa8.4□□□□□ -1.07
SQSTM1-202ENST00000389805 PLAC4Q8WY50 150 aa8.37□□□□□ -1.07
SQSTM1-202ENST00000389805 SEC61BP60468 96 aaKnown RBP8.36□□□□□ -1.07
SQSTM1-202ENST00000389805 R4GN34 69 aa8.32□□□□□ -1.08
SQSTM1-202ENST00000389805 LUZP6Q538Z0 58 aa8.3□□□□□ -1.08
SQSTM1-202ENST00000389805 LORP23490 312 aaPredicted RBP8.21□□□□□ -1.09
SQSTM1-202ENST00000389805 BIRC6Q9NR09 4857 aa8.19□□□□□ -1.1
SQSTM1-202ENST00000389805 KRTAP19-2Q3LHN2 52 aa8.17□□□□□ -1.1
SQSTM1-202ENST00000389805 HERC1Q15751 4861 aa8.17□□□□□ -1.1
SQSTM1-202ENST00000389805 PCLOQ9Y6V0 5065 aa8.13□□□□□ -1.11
SQSTM1-202ENST00000389805 CAMK2N1Q7Z7J9 78 aa8□□□□□ -1.13
SQSTM1-202ENST00000389805 FLGP20930 4061 aaPredicted RBP7.98□□□□□ -1.13
SQSTM1-202ENST00000389805 HMCN2Q8NDA2 5059 aa7.97□□□□□ -1.13
SQSTM1-202ENST00000389805 FAT4Q6V0I7 4981 aa7.95□□□□□ -1.14
SQSTM1-202ENST00000389805 RNF213Q63HN8 5207 aa7.94□□□□□ -1.14
SQSTM1-202ENST00000389805 PP632Q6XCG6 107 aa7.9□□□□□ -1.15
SQSTM1-202ENST00000389805 UBR4Q5T4S7 5183 aa7.77□□□□□ -1.17
SQSTM1-202ENST00000389805 LCE2CQ5TA81 110 aa7.76□□□□□ -1.17
SQSTM1-202ENST00000389805 TNP1P09430 55 aa7.66□□□□□ -1.18
SQSTM1-202ENST00000389805 M0R2T5 61 aa7.61□□□□□ -1.19
SQSTM1-202ENST00000389805 SPRR5A0A1B0GTR4 108 aa7.55□□□□□ -1.2
SQSTM1-202ENST00000389805 MT1HP80294 61 aa7.55□□□□□ -1.2
SQSTM1-202ENST00000389805 KRTAP19-1Q8IUB9 90 aa7.49□□□□□ -1.21
SQSTM1-202ENST00000389805 SPRR2GQ9BYE4 73 aa7.44□□□□□ -1.22
SQSTM1-202ENST00000389805 MT1FP04733 61 aa7.42□□□□□ -1.22
SQSTM1-202ENST00000389805 KRTAP10-10P60014 251 aa7.41□□□□□ -1.22
SQSTM1-202ENST00000389805 MT2AP02795 61 aa7.4□□□□□ -1.23
SQSTM1-202ENST00000389805 KRTAP23-1A1A580 65 aa7.39□□□□□ -1.23
SQSTM1-202ENST00000389805 KRTAP9-8Q9BYQ0 159 aa7.36□□□□□ -1.23
SQSTM1-202ENST00000389805 LCE3AQ5TA76 89 aa7.27□□□□□ -1.25
SQSTM1-202ENST00000389805 PRO2289Q9P1D8 64 aa7.22□□□□□ -1.25
SQSTM1-202ENST00000389805 KRTAP19-8Q3LI54 63 aa7.12□□□□□ -1.27
SQSTM1-202ENST00000389805 MT1BP07438 61 aa7.11□□□□□ -1.27
SQSTM1-202ENST00000389805 USH2AO75445 5202 aa7.07□□□□□ -1.28
SQSTM1-202ENST00000389805 KRTAP9-3Q9BYQ3 159 aa7.05□□□□□ -1.28
SQSTM1-202ENST00000389805 KRTAP10-5P60370 271 aa7.04□□□□□ -1.28
SQSTM1-202ENST00000389805 MT1XP80297 61 aa7.03□□□□□ -1.28
SQSTM1-202ENST00000389805 INE1O15225 51 aa7□□□□□ -1.29
SQSTM1-202ENST00000389805 KRTAP8-1Q8IUC2 63 aa6.93□□□□□ -1.3
SQSTM1-202ENST00000389805 FSIP2Q5CZC0 6907 aa6.91□□□□□ -1.3
SQSTM1-202ENST00000389805 KRTAP10-7P60409 375 aaPredicted RBP6.87□□□□□ -1.31
SQSTM1-202ENST00000389805 KRTAP12-3P60328 96 aa6.85□□□□□ -1.31
SQSTM1-202ENST00000389805 LCE2BO14633 110 aa6.84□□□□□ -1.31
SQSTM1-202ENST00000389805 KMT2DO14686 5537 aa6.83□□□□□ -1.32
SQSTM1-202ENST00000389805 KRTAP10-12P60413 245 aa6.81□□□□□ -1.32
SQSTM1-202ENST00000389805 LCE2AQ5TA79 106 aaPredicted RBP6.75□□□□□ -1.33
SQSTM1-202ENST00000389805 LCE2DQ5TA82 110 aaPredicted RBP6.73□□□□□ -1.33
SQSTM1-202ENST00000389805 KRTAP4-8A0A0G2JLE6 195 aa6.54□□□□□ -1.36
SQSTM1-202ENST00000389805 KRTAP4-8Q9BYQ9 185 aa6.54□□□□□ -1.36
SQSTM1-202ENST00000389805 KRTAP19-5Q3LI72 72 aa6.54□□□□□ -1.36
SQSTM1-202ENST00000389805 LCE3CQ5T5A8 94 aa6.44□□□□□ -1.38
SQSTM1-202ENST00000389805 KRTAP9-6A8MVA2 160 aa6.36□□□□□ -1.39
SQSTM1-202ENST00000389805 SSPOA2VEC9 5147 aa6.34□□□□□ -1.39
SQSTM1-202ENST00000389805 KRTAP19-7Q3SYF9 63 aa6.27□□□□□ -1.41
SQSTM1-202ENST00000389805 KRTAP4-7Q9BYR0 210 aa6.24□□□□□ -1.41
SQSTM1-202ENST00000389805 KRTAP2-3P0C7H8 128 aa6.14□□□□□ -1.43
SQSTM1-202ENST00000389805 KRTAP2-4Q9BYR9 128 aa6.14□□□□□ -1.43
SQSTM1-202ENST00000389805 KRTAP2-1Q9BYU5 128 aa6.14□□□□□ -1.43
SQSTM1-202ENST00000389805 DSTQ03001 7570 aaKnown RBP6.09□□□□□ -1.43
SQSTM1-202ENST00000389805 KRTAP19-6Q3LI70 58 aa6.08□□□□□ -1.44
SQSTM1-202ENST00000389805 MT1EP04732 61 aa6.08□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms