RNA–Protein interactions for RNA: ENST00000380285.7

SNX1-202, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 8,119 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-202ENST00000380285 LCE3AQ5TA76 89 aa4.06□□□□□ -1.76
SNX1-202ENST00000380285 ALMS1Q8TCU4 4167 aa4.06□□□□□ -1.76
SNX1-202ENST00000380285 HUWE1Q7Z6Z7 4374 aaKnown RBP3.99□□□□□ -1.77
SNX1-202ENST00000380285 KRTAP10-5P60370 271 aa3.93□□□□□ -1.78
SNX1-202ENST00000380285 LORP23490 312 aaPredicted RBP3.91□□□□□ -1.78
SNX1-202ENST00000380285 KRTAP19-4Q3LI73 84 aa3.9□□□□□ -1.79
SNX1-202ENST00000380285 DNAH1Q9P2D7 4330 aa3.84□□□□□ -1.79
SNX1-202ENST00000380285 SPRR2GQ9BYE4 73 aa3.82□□□□□ -1.8
SNX1-202ENST00000380285 KRTAP8-1Q8IUC2 63 aa3.8□□□□□ -1.8
SNX1-202ENST00000380285 CMYA5Q8N3K9 4069 aa3.79□□□□□ -1.8
SNX1-202ENST00000380285 DNAH3Q8TD57 4116 aa3.78□□□□□ -1.8
SNX1-202ENST00000380285 KRTAP4-5Q9BYR2 181 aa3.78□□□□□ -1.8
SNX1-202ENST00000380285 DNAH2Q9P225 4427 aa3.78□□□□□ -1.8
SNX1-202ENST00000380285 LYSTQ99698 3801 aa3.72□□□□□ -1.81
SNX1-202ENST00000380285 DNAH10Q8IVF4 4471 aa3.71□□□□□ -1.82
SNX1-202ENST00000380285 DNAH9Q9NYC9 4486 aa3.71□□□□□ -1.82
SNX1-202ENST00000380285 DNAH11Q96DT5 4516 aa3.69□□□□□ -1.82
SNX1-202ENST00000380285 LCE3CQ5T5A8 94 aa3.69□□□□□ -1.82
SNX1-202ENST00000380285 DNAH7Q8WXX0 4024 aa3.68□□□□□ -1.82
SNX1-202ENST00000380285 MT1HP80294 61 aa3.66□□□□□ -1.82
SNX1-202ENST00000380285 FRAS1Q86XX4 4008 aa3.65□□□□□ -1.83
SNX1-202ENST00000380285 MT2AP02795 61 aa3.64□□□□□ -1.83
SNX1-202ENST00000380285 ANK2Q01484 3957 aa3.64□□□□□ -1.83
SNX1-202ENST00000380285 KRTAP4-1Q9BYQ7 146 aa3.64□□□□□ -1.83
SNX1-202ENST00000380285 DNAH17Q9UFH2 4485 aa3.61□□□□□ -1.83
SNX1-202ENST00000380285 VPS13DQ5THJ4 4388 aa3.61□□□□□ -1.83
SNX1-202ENST00000380285 KRTAP19-5Q3LI72 72 aa3.6□□□□□ -1.83
SNX1-202ENST00000380285 DNAH5Q8TE73 4624 aa3.6□□□□□ -1.83
SNX1-202ENST00000380285 DNAH6Q9C0G6 4158 aa3.58□□□□□ -1.84
SNX1-202ENST00000380285 KRTAP10-7P60409 375 aaPredicted RBP3.58□□□□□ -1.84
SNX1-202ENST00000380285 DYNC2H1Q8NCM8 4307 aaKnown RBP3.58□□□□□ -1.84
SNX1-202ENST00000380285 DNAH8Q96JB1 4490 aa3.57□□□□□ -1.84
SNX1-202ENST00000380285 VPS13BQ7Z7G8 4022 aa3.56□□□□□ -1.84
SNX1-202ENST00000380285 FAT2Q9NYQ8 4349 aa3.54□□□□□ -1.84
SNX1-202ENST00000380285 KMT2AQ03164 3969 aa3.53□□□□□ -1.84
SNX1-202ENST00000380285 HECTD4Q9Y4D8 3996 aa3.53□□□□□ -1.84
SNX1-202ENST00000380285 MT1FP04733 61 aa3.53□□□□□ -1.84
SNX1-202ENST00000380285 SPRR5A0A1B0GTR4 108 aa3.52□□□□□ -1.85
SNX1-202ENST00000380285 PLECQ15149 4684 aaKnown RBP3.52□□□□□ -1.85
SNX1-202ENST00000380285 KRTAP19-8Q3LI54 63 aa3.51□□□□□ -1.85
SNX1-202ENST00000380285 SPRR2FQ96RM1 72 aa3.45□□□□□ -1.86
SNX1-202ENST00000380285 MT3P25713 68 aa3.44□□□□□ -1.86
SNX1-202ENST00000380285 DYNC1H1Q14204 4646 aaKnown RBP3.42□□□□□ -1.86
SNX1-202ENST00000380285 KRTAP19-1Q8IUB9 90 aa3.41□□□□□ -1.86
SNX1-202ENST00000380285 PRKDCP78527 4128 aaKnown RBP3.4□□□□□ -1.86
SNX1-202ENST00000380285 LRP1BQ9NZR2 4599 aa3.4□□□□□ -1.87
SNX1-202ENST00000380285 SACSQ9NZJ4 4579 aa3.39□□□□□ -1.87
SNX1-202ENST00000380285 STARD9Q9P2P6 4700 aa3.38□□□□□ -1.87
SNX1-202ENST00000380285 LRP1Q07954 4544 aaKnown RBP3.37□□□□□ -1.87
SNX1-202ENST00000380285 FAT1Q14517 4588 aa3.36□□□□□ -1.87
SNX1-202ENST00000380285 MT1XP80297 61 aa3.36□□□□□ -1.87
SNX1-202ENST00000380285 KRTAP12-4P60329 112 aa3.35□□□□□ -1.87
SNX1-202ENST00000380285 LCE3BQ5TA77 95 aa3.33□□□□□ -1.88
SNX1-202ENST00000380285 FLGP20930 4061 aaPredicted RBP3.31□□□□□ -1.88
SNX1-202ENST00000380285 MT1GP13640 62 aa3.27□□□□□ -1.89
SNX1-202ENST00000380285 MT1BP07438 61 aa3.26□□□□□ -1.89
SNX1-202ENST00000380285 APOBP04114 4563 aaKnown RBP3.25□□□□□ -1.89
SNX1-202ENST00000380285 SPRR2EP22531 72 aa3.25□□□□□ -1.89
SNX1-202ENST00000380285 SPRR2BP35325 72 aa3.25□□□□□ -1.89
SNX1-202ENST00000380285 SPRR2AP35326 72 aa3.25□□□□□ -1.89
SNX1-202ENST00000380285 LCE3DQ9BYE3 92 aa3.23□□□□□ -1.89
SNX1-202ENST00000380285 MYCBP2O75592 4640 aa3.22□□□□□ -1.89
SNX1-202ENST00000380285 KRTAP9-8Q9BYQ0 159 aa3.21□□□□□ -1.9
SNX1-202ENST00000380285 LCE3EQ5T5B0 92 aa3.21□□□□□ -1.9
SNX1-202ENST00000380285 FAT3Q8TDW7 4589 aa3.19□□□□□ -1.9
SNX1-202ENST00000380285 MT1LQ93083 61 aa3.17□□□□□ -1.9
SNX1-202ENST00000380285 LCE2BO14633 110 aa3.17□□□□□ -1.9
SNX1-202ENST00000380285 SPRR2DP22532 72 aa3.16□□□□□ -1.9
SNX1-202ENST00000380285 KRTAP9-3Q9BYQ3 159 aa3.14□□□□□ -1.91
SNX1-202ENST00000380285 RYR1P21817 5038 aa3.14□□□□□ -1.91
SNX1-202ENST00000380285 HSPG2P98160 4391 aa3.14□□□□□ -1.91
SNX1-202ENST00000380285 PKHD1P08F94 4074 aa3.11□□□□□ -1.91
SNX1-202ENST00000380285 PKD1P98161 4303 aa3.11□□□□□ -1.91
SNX1-202ENST00000380285 PKHD1L1Q86WI1 4243 aa3.1□□□□□ -1.91
SNX1-202ENST00000380285 KRTAP19-3Q7Z4W3 81 aa3.1□□□□□ -1.91
SNX1-202ENST00000380285 LCE2CQ5TA81 110 aa3.09□□□□□ -1.91
SNX1-202ENST00000380285 KRTAP4-8A0A0G2JLE6 195 aa3.06□□□□□ -1.92
SNX1-202ENST00000380285 KRTAP4-8Q9BYQ9 185 aa3.06□□□□□ -1.92
SNX1-202ENST00000380285 MT1EP04732 61 aa3.05□□□□□ -1.92
SNX1-202ENST00000380285 DNHD1Q96M86 4753 aa3.02□□□□□ -1.93
SNX1-202ENST00000380285 RYR3Q15413 4870 aa3.02□□□□□ -1.93
SNX1-202ENST00000380285 KRTAP17-1Q9BYP8 105 aa2.99□□□□□ -1.93
SNX1-202ENST00000380285 TNXBP22105 4242 aa2.97□□□□□ -1.93
SNX1-202ENST00000380285 RYR2Q92736 4967 aa2.97□□□□□ -1.93
SNX1-202ENST00000380285 KRTAP19-2Q3LHN2 52 aa2.95□□□□□ -1.94
SNX1-202ENST00000380285 MT1MQ8N339 61 aa2.94□□□□□ -1.94
SNX1-202ENST00000380285 PRM1P04553 51 aa2.93□□□□□ -1.94
SNX1-202ENST00000380285 LRP2P98164 4655 aa2.92□□□□□ -1.94
SNX1-202ENST00000380285 HERC1Q15751 4861 aa2.9□□□□□ -1.95
SNX1-202ENST00000380285 LCE2DQ5TA82 110 aaPredicted RBP2.89□□□□□ -1.95
SNX1-202ENST00000380285 KRTAP2-3P0C7H8 128 aa2.89□□□□□ -1.95
SNX1-202ENST00000380285 KRTAP4-7Q9BYR0 210 aa2.89□□□□□ -1.95
SNX1-202ENST00000380285 KRTAP2-4Q9BYR9 128 aa2.89□□□□□ -1.95
SNX1-202ENST00000380285 KRTAP2-1Q9BYU5 128 aa2.89□□□□□ -1.95
SNX1-202ENST00000380285 KRTAP19-6Q3LI70 58 aa2.87□□□□□ -1.95
SNX1-202ENST00000380285 MUC17Q685J3 4493 aa2.82□□□□□ -1.96
SNX1-202ENST00000380285 HYDINQ4G0P3 5121 aa2.81□□□□□ -1.96
SNX1-202ENST00000380285 MT1AP04731 61 aa2.8□□□□□ -1.96
SNX1-202ENST00000380285 MT4P47944 62 aa2.8□□□□□ -1.96
SNX1-202ENST00000380285 LCE1BQ5T7P3 118 aa2.78□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 100.2 ms