RNA–Protein interactions for RNA: ENST00000377861.4

PCDH9-201, Transcript of protocadherin 9, humanhuman

TSL 1 (best) BASIC

Gene PCDH9, Length 28,227 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9-201ENST00000377861 ANK3Q12955 4377 aaKnown RBP2.05□□□□□ -2.08
PCDH9-201ENST00000377861 KRTAP19-8Q3LI54 63 aa2.03□□□□□ -2.08
PCDH9-201ENST00000377861 DNAH5Q8TE73 4624 aa2□□□□□ -2.09
PCDH9-201ENST00000377861 ANK2Q01484 3957 aa2□□□□□ -2.09
PCDH9-201ENST00000377861 LORP23490 312 aaPredicted RBP2□□□□□ -2.09
PCDH9-201ENST00000377861 VPS13DQ5THJ4 4388 aa1.99□□□□□ -2.09
PCDH9-201ENST00000377861 LRP1BQ9NZR2 4599 aa1.97□□□□□ -2.09
PCDH9-201ENST00000377861 CMYA5Q8N3K9 4069 aa1.96□□□□□ -2.1
PCDH9-201ENST00000377861 DNAH6Q9C0G6 4158 aa1.96□□□□□ -2.1
PCDH9-201ENST00000377861 DNAH1Q9P2D7 4330 aa1.95□□□□□ -2.1
PCDH9-201ENST00000377861 LCE3CQ5T5A8 94 aa1.95□□□□□ -2.1
PCDH9-201ENST00000377861 DNAH11Q96DT5 4516 aa1.95□□□□□ -2.1
PCDH9-201ENST00000377861 DNAH2Q9P225 4427 aa1.94□□□□□ -2.1
PCDH9-201ENST00000377861 DNAH7Q8WXX0 4024 aa1.92□□□□□ -2.1
PCDH9-201ENST00000377861 ALMS1Q8TCU4 4167 aa1.92□□□□□ -2.1
PCDH9-201ENST00000377861 HUWE1Q7Z6Z7 4374 aaKnown RBP1.91□□□□□ -2.1
PCDH9-201ENST00000377861 LCE3AQ5TA76 89 aa1.9□□□□□ -2.11
PCDH9-201ENST00000377861 FRAS1Q86XX4 4008 aa1.89□□□□□ -2.11
PCDH9-201ENST00000377861 DNAH9Q9NYC9 4486 aa1.89□□□□□ -2.11
PCDH9-201ENST00000377861 HECTD4Q9Y4D8 3996 aa1.89□□□□□ -2.11
PCDH9-201ENST00000377861 DNAH17Q9UFH2 4485 aa1.89□□□□□ -2.11
PCDH9-201ENST00000377861 HSPG2P98160 4391 aa1.89□□□□□ -2.11
PCDH9-201ENST00000377861 LYSTQ99698 3801 aa1.89□□□□□ -2.11
PCDH9-201ENST00000377861 KRTAP19-1Q8IUB9 90 aa1.88□□□□□ -2.11
PCDH9-201ENST00000377861 DYNC2H1Q8NCM8 4307 aaKnown RBP1.88□□□□□ -2.11
PCDH9-201ENST00000377861 DNAH3Q8TD57 4116 aa1.88□□□□□ -2.11
PCDH9-201ENST00000377861 ZNF469Q96JG9 3925 aaPredicted RBP1.88□□□□□ -2.11
PCDH9-201ENST00000377861 DNAH8Q96JB1 4490 aa1.87□□□□□ -2.11
PCDH9-201ENST00000377861 MT1FP04733 61 aa1.85□□□□□ -2.11
PCDH9-201ENST00000377861 PLECQ15149 4684 aaKnown RBP1.85□□□□□ -2.11
PCDH9-201ENST00000377861 MT1HP80294 61 aa1.85□□□□□ -2.11
PCDH9-201ENST00000377861 MT2AP02795 61 aa1.85□□□□□ -2.11
PCDH9-201ENST00000377861 PRKDCP78527 4128 aaKnown RBP1.84□□□□□ -2.11
PCDH9-201ENST00000377861 VPS13BQ7Z7G8 4022 aa1.84□□□□□ -2.11
PCDH9-201ENST00000377861 MT1EP04732 61 aa1.84□□□□□ -2.12
PCDH9-201ENST00000377861 MT1LQ93083 61 aa1.83□□□□□ -2.12
PCDH9-201ENST00000377861 CSMD3Q7Z407 3707 aa1.83□□□□□ -2.12
PCDH9-201ENST00000377861 MT1GP13640 62 aa1.83□□□□□ -2.12
PCDH9-201ENST00000377861 KRTAP10-5P60370 271 aa1.82□□□□□ -2.12
PCDH9-201ENST00000377861 DYNC1H1Q14204 4646 aaKnown RBP1.82□□□□□ -2.12
PCDH9-201ENST00000377861 SACSQ9NZJ4 4579 aa1.82□□□□□ -2.12
PCDH9-201ENST00000377861 KRTAP9-8Q9BYQ0 159 aa1.81□□□□□ -2.12
PCDH9-201ENST00000377861 KRTAP19-2Q3LHN2 52 aa1.81□□□□□ -2.12
PCDH9-201ENST00000377861 FAT1Q14517 4588 aa1.79□□□□□ -2.12
PCDH9-201ENST00000377861 MUC17Q685J3 4493 aa1.78□□□□□ -2.12
PCDH9-201ENST00000377861 KRTAP4-1Q9BYQ7 146 aa1.77□□□□□ -2.13
PCDH9-201ENST00000377861 KRTAP9-3Q9BYQ3 159 aa1.77□□□□□ -2.13
PCDH9-201ENST00000377861 MT1XP80297 61 aa1.76□□□□□ -2.13
PCDH9-201ENST00000377861 KRTAP10-7P60409 375 aaPredicted RBP1.76□□□□□ -2.13
PCDH9-201ENST00000377861 MT3P25713 68 aa1.76□□□□□ -2.13
PCDH9-201ENST00000377861 FLGP20930 4061 aaPredicted RBP1.76□□□□□ -2.13
PCDH9-201ENST00000377861 LCE2CQ5TA81 110 aa1.76□□□□□ -2.13
PCDH9-201ENST00000377861 KRTAP4-5Q9BYR2 181 aa1.75□□□□□ -2.13
PCDH9-201ENST00000377861 MT1AP04731 61 aa1.75□□□□□ -2.13
PCDH9-201ENST00000377861 KMT2AQ03164 3969 aa1.74□□□□□ -2.13
PCDH9-201ENST00000377861 MYCBP2O75592 4640 aa1.74□□□□□ -2.13
PCDH9-201ENST00000377861 APOBP04114 4563 aaKnown RBP1.73□□□□□ -2.13
PCDH9-201ENST00000377861 LRP1Q07954 4544 aaKnown RBP1.73□□□□□ -2.13
PCDH9-201ENST00000377861 MT1BP07438 61 aa1.72□□□□□ -2.13
PCDH9-201ENST00000377861 KRTAP2-3P0C7H8 128 aa1.72□□□□□ -2.13
PCDH9-201ENST00000377861 KRTAP2-4Q9BYR9 128 aa1.72□□□□□ -2.13
PCDH9-201ENST00000377861 KRTAP2-1Q9BYU5 128 aa1.72□□□□□ -2.13
PCDH9-201ENST00000377861 FAT2Q9NYQ8 4349 aa1.71□□□□□ -2.13
PCDH9-201ENST00000377861 KRTAP19-5Q3LI72 72 aa1.71□□□□□ -2.14
PCDH9-201ENST00000377861 MT1MQ8N339 61 aa1.7□□□□□ -2.14
PCDH9-201ENST00000377861 PKD1P98161 4303 aa1.7□□□□□ -2.14
PCDH9-201ENST00000377861 PKHD1P08F94 4074 aa1.7□□□□□ -2.14
PCDH9-201ENST00000377861 PKHD1L1Q86WI1 4243 aa1.7□□□□□ -2.14
PCDH9-201ENST00000377861 KRTAP12-4P60329 112 aa1.69□□□□□ -2.14
PCDH9-201ENST00000377861 STARD9Q9P2P6 4700 aa1.68□□□□□ -2.14
PCDH9-201ENST00000377861 LCE3DQ9BYE3 92 aa1.68□□□□□ -2.14
PCDH9-201ENST00000377861 FAT3Q8TDW7 4589 aa1.67□□□□□ -2.14
PCDH9-201ENST00000377861 LCE3EQ5T5B0 92 aa1.66□□□□□ -2.14
PCDH9-201ENST00000377861 RYR1P21817 5038 aa1.66□□□□□ -2.14
PCDH9-201ENST00000377861 KRTAP19-6Q3LI70 58 aa1.66□□□□□ -2.14
PCDH9-201ENST00000377861 KRTAP19-3Q7Z4W3 81 aa1.64□□□□□ -2.15
PCDH9-201ENST00000377861 LCE1AQ5T7P2 110 aa1.63□□□□□ -2.15
PCDH9-201ENST00000377861 DNHD1Q96M86 4753 aa1.62□□□□□ -2.15
PCDH9-201ENST00000377861 KIAA1109Q2LD37 5005 aa1.61□□□□□ -2.15
PCDH9-201ENST00000377861 LCE2DQ5TA82 110 aaPredicted RBP1.61□□□□□ -2.15
PCDH9-201ENST00000377861 LRP2P98164 4655 aa1.6□□□□□ -2.15
PCDH9-201ENST00000377861 SPRR2AP35326 72 aa1.6□□□□□ -2.15
PCDH9-201ENST00000377861 RYR3Q15413 4870 aa1.6□□□□□ -2.15
PCDH9-201ENST00000377861 RYR2Q92736 4967 aa1.59□□□□□ -2.15
PCDH9-201ENST00000377861 LCE2BO14633 110 aa1.57□□□□□ -2.16
PCDH9-201ENST00000377861 TNXBP22105 4242 aa1.55□□□□□ -2.16
PCDH9-201ENST00000377861 HERC2O95714 4834 aa1.54□□□□□ -2.16
PCDH9-201ENST00000377861 LCE2AQ5TA79 106 aaPredicted RBP1.54□□□□□ -2.16
PCDH9-201ENST00000377861 KRTAP19-7Q3SYF9 63 aa1.53□□□□□ -2.16
PCDH9-201ENST00000377861 SPRR2FQ96RM1 72 aa1.53□□□□□ -2.16
PCDH9-201ENST00000377861 SPRR2BP35325 72 aa1.51□□□□□ -2.17
PCDH9-201ENST00000377861 LCE5AQ5TCM9 118 aa1.48□□□□□ -2.17
PCDH9-201ENST00000377861 BIRC6Q9NR09 4857 aa1.47□□□□□ -2.17
PCDH9-201ENST00000377861 KMT2CQ8NEZ4 4911 aaKnown RBP1.46□□□□□ -2.17
PCDH9-201ENST00000377861 KRTAP17-1Q9BYP8 105 aa1.46□□□□□ -2.18
PCDH9-201ENST00000377861 LPAP08519 4548 aa1.43□□□□□ -2.18
PCDH9-201ENST00000377861 KRTAP9-4Q9BYQ2 154 aa1.42□□□□□ -2.18
PCDH9-201ENST00000377861 KRTAP4-8A0A0G2JLE6 195 aa1.41□□□□□ -2.18
PCDH9-201ENST00000377861 KRTAP4-8Q9BYQ9 185 aa1.41□□□□□ -2.18
PCDH9-201ENST00000377861 SPRR2EP22531 72 aa1.4□□□□□ -2.18
Retrieved 100 of 20,778 RNA–protein pairs in 66.5 ms