RNA–Protein interactions for RNA: ENST00000374879.4

TMEFF1-201, Transcript of transmembrane protein with EGF like and two follistatin like domains 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TMEFF1, Length 2,611 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEFF1-201ENST00000374879 SACSQ9NZJ4 4579 aa10.7□□□□□ -0.7
TMEFF1-201ENST00000374879 FAT1Q14517 4588 aa10.69□□□□□ -0.7
TMEFF1-201ENST00000374879 DYNC1H1Q14204 4646 aaKnown RBP10.62□□□□□ -0.71
TMEFF1-201ENST00000374879 KRTAP3-2Q9BYR7 98 aa10.62□□□□□ -0.71
TMEFF1-201ENST00000374879 KRTAP3-3Q9BYR6 98 aa10.6□□□□□ -0.71
TMEFF1-201ENST00000374879 S4R3F8 94 aa10.57□□□□□ -0.72
TMEFF1-201ENST00000374879 KRTAP10-4P60372 401 aaPredicted RBP10.54□□□□□ -0.72
TMEFF1-201ENST00000374879 A0A1B0GVY2 172 aa10.54□□□□□ -0.72
TMEFF1-201ENST00000374879 KRTAP12-2P59991 146 aa10.53□□□□□ -0.72
TMEFF1-201ENST00000374879 KRTAP21-3Q3LHN1 58 aa10.53□□□□□ -0.72
TMEFF1-201ENST00000374879 A0A0A0MQY5 61 aa10.52□□□□□ -0.73
TMEFF1-201ENST00000374879 KMT2CQ8NEZ4 4911 aaKnown RBP10.51□□□□□ -0.73
TMEFF1-201ENST00000374879 PKHD1L1Q86WI1 4243 aa10.5□□□□□ -0.73
TMEFF1-201ENST00000374879 APOBP04114 4563 aaKnown RBP10.5□□□□□ -0.73
TMEFF1-201ENST00000374879 XP32Q5T750 250 aa10.37□□□□□ -0.75
TMEFF1-201ENST00000374879 KRTAP12-1P59990 96 aa10.36□□□□□ -0.75
TMEFF1-201ENST00000374879 RYR2Q92736 4967 aa10.32□□□□□ -0.76
TMEFF1-201ENST00000374879 LRP1Q07954 4544 aaKnown RBP10.32□□□□□ -0.76
TMEFF1-201ENST00000374879 KRTAP10-8P60410 259 aa10.25□□□□□ -0.77
TMEFF1-201ENST00000374879 MYCBP2O75592 4640 aa10.21□□□□□ -0.78
TMEFF1-201ENST00000374879 LUZP6Q538Z0 58 aa10.19□□□□□ -0.78
TMEFF1-201ENST00000374879 FAT3Q8TDW7 4589 aa10.17□□□□□ -0.78
TMEFF1-201ENST00000374879 TNXBP22105 4242 aa10.15□□□□□ -0.78
TMEFF1-201ENST00000374879 RYR3Q15413 4870 aa10.13□□□□□ -0.79
TMEFF1-201ENST00000374879 HSPG2P98160 4391 aa10.11□□□□□ -0.79
TMEFF1-201ENST00000374879 Q5VSD8 79 aa10.11□□□□□ -0.79
TMEFF1-201ENST00000374879 PLAC4Q8WY50 150 aa10.05□□□□□ -0.8
TMEFF1-201ENST00000374879 M0QZ58 72 aa10□□□□□ -0.81
TMEFF1-201ENST00000374879 KIAA1109Q2LD37 5005 aa9.97□□□□□ -0.81
TMEFF1-201ENST00000374879 KRTAP17-1Q9BYP8 105 aa9.95□□□□□ -0.82
TMEFF1-201ENST00000374879 LPAP08519 4548 aa9.87□□□□□ -0.83
TMEFF1-201ENST00000374879 RYR1P21817 5038 aa9.87□□□□□ -0.83
TMEFF1-201ENST00000374879 MT1HL1P0DM35 61 aa9.82□□□□□ -0.84
TMEFF1-201ENST00000374879 EPPK1P58107 5090 aaKnown RBP9.8□□□□□ -0.84
TMEFF1-201ENST00000374879 LRP2P98164 4655 aa9.7□□□□□ -0.86
TMEFF1-201ENST00000374879 ABCA13Q86UQ4 5058 aa9.7□□□□□ -0.86
TMEFF1-201ENST00000374879 R4GN34 69 aa9.66□□□□□ -0.86
TMEFF1-201ENST00000374879 LORP23490 312 aaPredicted RBP9.5□□□□□ -0.89
TMEFF1-201ENST00000374879 PP632Q6XCG6 107 aa9.47□□□□□ -0.89
TMEFF1-201ENST00000374879 KRTAP4-5Q9BYR2 181 aa9.41□□□□□ -0.9
TMEFF1-201ENST00000374879 MUC2Q02817 5179 aa9.28□□□□□ -0.92
TMEFF1-201ENST00000374879 CAMK2N1Q7Z7J9 78 aa9.27□□□□□ -0.93
TMEFF1-201ENST00000374879 SEC61BP60468 96 aaKnown RBP9.25□□□□□ -0.93
TMEFF1-201ENST00000374879 MUC17Q685J3 4493 aa9.19□□□□□ -0.94
TMEFF1-201ENST00000374879 SPRR5A0A1B0GTR4 108 aa9.18□□□□□ -0.94
TMEFF1-201ENST00000374879 KRTAP4-1Q9BYQ7 146 aa9.16□□□□□ -0.94
TMEFF1-201ENST00000374879 HERC2O95714 4834 aa9.16□□□□□ -0.94
TMEFF1-201ENST00000374879 J3QL48 77 aa9.12□□□□□ -0.95
TMEFF1-201ENST00000374879 TNP1P09430 55 aa8.99□□□□□ -0.97
TMEFF1-201ENST00000374879 KRTAP19-2Q3LHN2 52 aa8.98□□□□□ -0.97
TMEFF1-201ENST00000374879 PRO2289Q9P1D8 64 aa8.94□□□□□ -0.98
TMEFF1-201ENST00000374879 HERC1Q15751 4861 aa8.93□□□□□ -0.98
TMEFF1-201ENST00000374879 KRTAP23-1A1A580 65 aa8.92□□□□□ -0.98
TMEFF1-201ENST00000374879 PCLOQ9Y6V0 5065 aa8.82□□□□□ -1
TMEFF1-201ENST00000374879 FAT4Q6V0I7 4981 aa8.77□□□□□ -1.01
TMEFF1-201ENST00000374879 BIRC6Q9NR09 4857 aa8.71□□□□□ -1.02
TMEFF1-201ENST00000374879 FLGP20930 4061 aaPredicted RBP8.69□□□□□ -1.02
TMEFF1-201ENST00000374879 RNF213Q63HN8 5207 aa8.66□□□□□ -1.02
TMEFF1-201ENST00000374879 INE1O15225 51 aa8.66□□□□□ -1.02
TMEFF1-201ENST00000374879 HMCN2Q8NDA2 5059 aa8.58□□□□□ -1.04
TMEFF1-201ENST00000374879 UBR4Q5T4S7 5183 aa8.5□□□□□ -1.05
TMEFF1-201ENST00000374879 LCE3AQ5TA76 89 aa8.49□□□□□ -1.05
TMEFF1-201ENST00000374879 LCE2CQ5TA81 110 aa8.44□□□□□ -1.06
TMEFF1-201ENST00000374879 M0R2T5 61 aa8.29□□□□□ -1.08
TMEFF1-201ENST00000374879 SPRR2GQ9BYE4 73 aa8.29□□□□□ -1.08
TMEFF1-201ENST00000374879 KRTAP19-1Q8IUB9 90 aa8.26□□□□□ -1.09
TMEFF1-201ENST00000374879 MT1HP80294 61 aa8.21□□□□□ -1.09
TMEFF1-201ENST00000374879 KRTAP8-1Q8IUC2 63 aa8.19□□□□□ -1.1
TMEFF1-201ENST00000374879 KRTAP10-10P60014 251 aa8.11□□□□□ -1.11
TMEFF1-201ENST00000374879 MT1FP04733 61 aa8.1□□□□□ -1.11
TMEFF1-201ENST00000374879 MT2AP02795 61 aa8.09□□□□□ -1.11
TMEFF1-201ENST00000374879 KRTAP10-12P60413 245 aa8.04□□□□□ -1.12
TMEFF1-201ENST00000374879 KRTAP9-8Q9BYQ0 159 aa8.03□□□□□ -1.12
TMEFF1-201ENST00000374879 KRTAP12-3P60328 96 aa8□□□□□ -1.13
TMEFF1-201ENST00000374879 KRTAP19-8Q3LI54 63 aa7.9□□□□□ -1.14
TMEFF1-201ENST00000374879 MT1BP07438 61 aa7.83□□□□□ -1.16
TMEFF1-201ENST00000374879 KRTAP10-5P60370 271 aa7.81□□□□□ -1.16
TMEFF1-201ENST00000374879 MT1XP80297 61 aa7.78□□□□□ -1.16
TMEFF1-201ENST00000374879 USH2AO75445 5202 aa7.74□□□□□ -1.17
TMEFF1-201ENST00000374879 KRTAP9-3Q9BYQ3 159 aa7.68□□□□□ -1.18
TMEFF1-201ENST00000374879 KRTAP10-7P60409 375 aaPredicted RBP7.67□□□□□ -1.18
TMEFF1-201ENST00000374879 LCE3CQ5T5A8 94 aa7.58□□□□□ -1.2
TMEFF1-201ENST00000374879 KMT2DO14686 5537 aa7.54□□□□□ -1.2
TMEFF1-201ENST00000374879 KRTAP9-6A8MVA2 160 aa7.47□□□□□ -1.21
TMEFF1-201ENST00000374879 KRTAP19-5Q3LI72 72 aa7.46□□□□□ -1.22
TMEFF1-201ENST00000374879 LCE2BO14633 110 aa7.39□□□□□ -1.23
TMEFF1-201ENST00000374879 KRTAP2-3P0C7H8 128 aa7.38□□□□□ -1.23
TMEFF1-201ENST00000374879 KRTAP2-4Q9BYR9 128 aa7.38□□□□□ -1.23
TMEFF1-201ENST00000374879 KRTAP2-1Q9BYU5 128 aa7.38□□□□□ -1.23
TMEFF1-201ENST00000374879 FSIP2Q5CZC0 6907 aa7.21□□□□□ -1.25
TMEFF1-201ENST00000374879 LCE2AQ5TA79 106 aaPredicted RBP7.21□□□□□ -1.25
TMEFF1-201ENST00000374879 KRTAP4-7Q9BYR0 210 aa7.14□□□□□ -1.27
TMEFF1-201ENST00000374879 KRTAP4-8A0A0G2JLE6 195 aa7.13□□□□□ -1.27
TMEFF1-201ENST00000374879 KRTAP4-8Q9BYQ9 185 aa7.13□□□□□ -1.27
TMEFF1-201ENST00000374879 KRTAP19-7Q3SYF9 63 aa6.93□□□□□ -1.3
TMEFF1-201ENST00000374879 SSPOA2VEC9 5147 aa6.93□□□□□ -1.3
TMEFF1-201ENST00000374879 KRTAP12-4P60329 112 aa6.77□□□□□ -1.33
TMEFF1-201ENST00000374879 MT1LQ93083 61 aa6.76□□□□□ -1.33
TMEFF1-201ENST00000374879 MT1EP04732 61 aa6.73□□□□□ -1.33
TMEFF1-201ENST00000374879 KRTAP19-4Q3LI73 84 aa6.69□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 53.3 ms