RNA–Protein interactions for RNA: ENST00000374730.2

USP48-202, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 570 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-202ENST00000374730 C8orf17Q9NRJ1 99 aa2.78□□□□□ -1.96
USP48-202ENST00000374730 ABCA13Q86UQ4 5058 aa2.78□□□□□ -1.97
USP48-202ENST00000374730 C4orf26Q17RF5 130 aa2.77□□□□□ -1.97
USP48-202ENST00000374730 SSBP3-AS1Q7Z2R9 100 aa2.77□□□□□ -1.97
USP48-202ENST00000374730 LINC00208Q96KT6 92 aa2.77□□□□□ -1.97
USP48-202ENST00000374730 NDUFS5O43920 106 aa2.76□□□□□ -1.97
USP48-202ENST00000374730 FAM229BQ4G0N7 80 aa2.76□□□□□ -1.97
USP48-202ENST00000374730 HRCT1Q6UXD1 115 aa2.76□□□□□ -1.97
USP48-202ENST00000374730 CIRBP-AS1Q8TBR5 109 aa2.76□□□□□ -1.97
USP48-202ENST00000374730 PRO0628Q9UI54 55 aa2.76□□□□□ -1.97
USP48-202ENST00000374730 FAT1Q14517 4588 aa2.76□□□□□ -1.97
USP48-202ENST00000374730 IGHV6-1A0A0B4J1U7 121 aa2.75□□□□□ -1.97
USP48-202ENST00000374730 KRTAP5-5Q701N2 237 aaPredicted RBP2.75□□□□□ -1.97
USP48-202ENST00000374730 C1orf64Q8NEQ6 169 aa2.75□□□□□ -1.97
USP48-202ENST00000374730 MRPL34Q9BQ48 92 aaKnown RBP2.75□□□□□ -1.97
USP48-202ENST00000374730 HERC1Q15751 4861 aa2.75□□□□□ -1.97
USP48-202ENST00000374730 C8orf87E5RJ46 101 aa2.74□□□□□ -1.97
USP48-202ENST00000374730 KRTAP10-1P60331 282 aa2.74□□□□□ -1.97
USP48-202ENST00000374730 KIAA1109Q2LD37 5005 aa2.73□□□□□ -1.97
USP48-202ENST00000374730 Q1T7F1 81 aa2.72□□□□□ -1.97
USP48-202ENST00000374730 LOC101927531A0A1B0GV80 90 aa2.71□□□□□ -1.98
USP48-202ENST00000374730 KRTAP13-2Q52LG2 175 aa2.71□□□□□ -1.98
USP48-202ENST00000374730 FAT3Q8TDW7 4589 aa2.71□□□□□ -1.98
USP48-202ENST00000374730 C1orf195Q5TG92 126 aa2.7□□□□□ -1.98
USP48-202ENST00000374730 SPINK6Q6UWN8 80 aa2.7□□□□□ -1.98
USP48-202ENST00000374730 LIMD2Q9BT23 127 aa2.7□□□□□ -1.98
USP48-202ENST00000374730 HSPG2P98160 4391 aa2.69□□□□□ -1.98
USP48-202ENST00000374730 TNXBP22105 4242 aa2.69□□□□□ -1.98
USP48-202ENST00000374730 LINC00313P59037 77 aa2.68□□□□□ -1.98
USP48-202ENST00000374730 PCOTHQ58A44 107 aa2.68□□□□□ -1.98
USP48-202ENST00000374730 COA5Q86WW8 74 aa2.68□□□□□ -1.98
USP48-202ENST00000374730 RPS29P62273 56 aaKnown RBP2.67□□□□□ -1.98
USP48-202ENST00000374730 Q5W150 140 aa2.67□□□□□ -1.98
USP48-202ENST00000374730 KRTAP5-2Q701N4 177 aa2.67□□□□□ -1.98
USP48-202ENST00000374730 SPINK1P00995 79 aa2.66□□□□□ -1.98
USP48-202ENST00000374730 HRES1P13985 223 aa2.65□□□□□ -1.99
USP48-202ENST00000374730 SPAG11AQ6PDA7 123 aa2.65□□□□□ -1.99
USP48-202ENST00000374730 BRK1Q8WUW1 75 aa2.65□□□□□ -1.99
USP48-202ENST00000374730 A8MUN3 132 aa2.64□□□□□ -1.99
USP48-202ENST00000374730 Q5VV11 94 aa2.64□□□□□ -1.99
USP48-202ENST00000374730 RBM12B-AS1Q9P1G2 102 aa2.64□□□□□ -1.99
USP48-202ENST00000374730 LINC00304Q8N9R0 145 aa2.63□□□□□ -1.99
USP48-202ENST00000374730 DMAC1Q96GE9 116 aa2.63□□□□□ -1.99
USP48-202ENST00000374730 LINC01558Q9Y6Z2 57 aa2.63□□□□□ -1.99
USP48-202ENST00000374730 ACYP2P14621 99 aa2.62□□□□□ -1.99
USP48-202ENST00000374730 KRTAP10-4P60372 401 aaPredicted RBP2.62□□□□□ -1.99
USP48-202ENST00000374730 PRR15LQ9BU68 103 aa2.62□□□□□ -1.99
USP48-202ENST00000374730 LCE1CQ5T751 118 aa2.61□□□□□ -1.99
USP48-202ENST00000374730 LCE1BQ5T7P3 118 aa2.61□□□□□ -1.99
USP48-202ENST00000374730 LRP1Q07954 4544 aaKnown RBP2.61□□□□□ -1.99
USP48-202ENST00000374730 CHKB-CPT1BH3BT56 60 aa2.59□□□□□ -1.99
USP48-202ENST00000374730 RETNLBQ9BQ08 111 aa2.59□□□□□ -1.99
USP48-202ENST00000374730 A8MUU9 505 aa2.58□□□□□ -2
USP48-202ENST00000374730 SMR3BP02814 79 aaPredicted RBP2.58□□□□□ -2
USP48-202ENST00000374730 C7orf65Q6ZTY9 151 aa2.58□□□□□ -2
USP48-202ENST00000374730 C20orf166-AS1Q96NR2 134 aa2.58□□□□□ -2
USP48-202ENST00000374730 MYCBP2O75592 4640 aa2.57□□□□□ -2
USP48-202ENST00000374730 A6NED7 52 aa2.57□□□□□ -2
USP48-202ENST00000374730 CDC42SE1Q9NRR8 79 aa2.57□□□□□ -2
USP48-202ENST00000374730 FLG2Q5D862 2391 aaPredicted RBP2.56□□□□□ -2
USP48-202ENST00000374730 ATP11AUNQ6ZP68 121 aa2.55□□□□□ -2
USP48-202ENST00000374730 LCA10Q71F78 164 aa2.55□□□□□ -2
USP48-202ENST00000374730 PMAIP1Q13794 54 aa2.54□□□□□ -2
USP48-202ENST00000374730 LUZP6Q538Z0 58 aa2.54□□□□□ -2
USP48-202ENST00000374730 SPINK7P58062 85 aa2.53□□□□□ -2
USP48-202ENST00000374730 A0A1B0GU69 56 aa2.52□□□□□ -2.01
USP48-202ENST00000374730 C9orf92A6NGG3 77 aa2.52□□□□□ -2.01
USP48-202ENST00000374730 A6NN06 94 aa2.5□□□□□ -2.01
USP48-202ENST00000374730 Q5VSD8 79 aa2.5□□□□□ -2.01
USP48-202ENST00000374730 SPTSSBQ8NFR3 76 aa2.5□□□□□ -2.01
USP48-202ENST00000374730 RNF213Q63HN8 5207 aa2.5□□□□□ -2.01
USP48-202ENST00000374730 HMCN2Q8NDA2 5059 aa2.49□□□□□ -2.01
USP48-202ENST00000374730 K7ERS5 55 aa2.49□□□□□ -2.01
USP48-202ENST00000374730 SPATA8Q6RVD6 105 aa2.49□□□□□ -2.01
USP48-202ENST00000374730 UQCR11O14957 56 aa2.48□□□□□ -2.01
USP48-202ENST00000374730 KTN1-AS1Q86SY8 53 aa2.48□□□□□ -2.01
USP48-202ENST00000374730 LCE3DQ9BYE3 92 aa2.48□□□□□ -2.01
USP48-202ENST00000374730 RPL37P61927 97 aaKnown RBP2.47□□□□□ -2.01
USP48-202ENST00000374730 COX6B2Q6YFQ2 88 aa2.47□□□□□ -2.01
USP48-202ENST00000374730 MIR22HGQ0VDD5 57 aa2.46□□□□□ -2.02
USP48-202ENST00000374730 DMBT1Q9UGM3 2413 aaPredicted RBP2.46□□□□□ -2.02
USP48-202ENST00000374730 MUC2Q02817 5179 aa2.45□□□□□ -2.02
USP48-202ENST00000374730 LRP2P98164 4655 aa2.45□□□□□ -2.02
USP48-202ENST00000374730 MT1HL1P0DM35 61 aa2.44□□□□□ -2.02
USP48-202ENST00000374730 MUC17Q685J3 4493 aa2.44□□□□□ -2.02
USP48-202ENST00000374730 PP632Q6XCG6 107 aa2.43□□□□□ -2.02
USP48-202ENST00000374730 FAT4Q6V0I7 4981 aa2.42□□□□□ -2.02
USP48-202ENST00000374730 H1FX-AS1Q4G0G2 97 aa2.41□□□□□ -2.02
USP48-202ENST00000374730 LPAP08519 4548 aa2.41□□□□□ -2.02
USP48-202ENST00000374730 A0A1B0GU33 70 aa2.4□□□□□ -2.03
USP48-202ENST00000374730 H0YAA0 97 aa2.4□□□□□ -2.03
USP48-202ENST00000374730 TPRXLQ17RH7 258 aa2.4□□□□□ -2.03
USP48-202ENST00000374730 S4R3F8 94 aa2.38□□□□□ -2.03
USP48-202ENST00000374730 ADM2Q7Z4H4 148 aa2.36□□□□□ -2.03
USP48-202ENST00000374730 SPINT4Q6UDR6 99 aa2.34□□□□□ -2.03
USP48-202ENST00000374730 FLGP20930 4061 aaPredicted RBP2.32□□□□□ -2.04
USP48-202ENST00000374730 KRTAP13-4Q3LI77 160 aa2.3□□□□□ -2.04
USP48-202ENST00000374730 CSAG1Q6PB30 78 aa2.3□□□□□ -2.04
USP48-202ENST00000374730 P0C880 135 aa2.29□□□□□ -2.04
USP48-202ENST00000374730 FSIP2Q5CZC0 6907 aa2.29□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms