RNA–Protein interactions for RNA: ENST00000374730.2

USP48-202, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 570 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-202ENST00000374730 AEBP2Q6ZN18 517 aaPredicted RBP24.39■■□□□ 1.49
USP48-202ENST00000374730 CHIC1Q5VXU3 224 aa23.58■■□□□ 1.37
USP48-202ENST00000374730 SENP3Q9H4L4 574 aaPredicted RBP20.81■□□□□ 0.92
USP48-202ENST00000374730 PHF23Q9BUL5 403 aaPredicted RBP20.65■□□□□ 0.9
USP48-202ENST00000374730 FOXD1Q16676 465 aa19.3■□□□□ 0.68
USP48-202ENST00000374730 PLPPR3Q6T4P5 718 aa19.02■□□□□ 0.64
USP48-202ENST00000374730 PPP6R1Q9UPN7 881 aa18.29■□□□□ 0.52
USP48-202ENST00000374730 ADRA2BP18089 450 aa18.26■□□□□ 0.51
USP48-202ENST00000374730 PIAS4Q8N2W9 510 aaPredicted RBP18.13■□□□□ 0.49
USP48-202ENST00000374730 MSH5O43196 834 aa17.97■□□□□ 0.47
USP48-202ENST00000374730 POTEDQ86YR6 584 aa16.84■□□□□ 0.29
USP48-202ENST00000374730 SCAF1Q9H7N4 1312 aaKnown RBP16.79■□□□□ 0.28
USP48-202ENST00000374730 PPP4R3CPQ6ZMV5 832 aa16.69■□□□□ 0.26
USP48-202ENST00000374730 MAPK8IP2Q13387 824 aaPredicted RBP16.63■□□□□ 0.25
USP48-202ENST00000374730 DMRT2Q9Y5R5 561 aa16.56■□□□□ 0.24
USP48-202ENST00000374730 CNKSR2Q8WXI2 1034 aa16.32■□□□□ 0.2
USP48-202ENST00000374730 NCBP3Q53F19 620 aaKnown RBP16.2■□□□□ 0.18
USP48-202ENST00000374730 HOXD11P31277 338 aaPredicted RBP16.1■□□□□ 0.17
USP48-202ENST00000374730 RNF216Q9NWF9 866 aaPredicted RBP16.09■□□□□ 0.17
USP48-202ENST00000374730 KCNA4P22459 653 aa15.94■□□□□ 0.14
USP48-202ENST00000374730 NPM3O75607 178 aaKnown RBP15.93■□□□□ 0.14
USP48-202ENST00000374730 DCAF8L1A6NGE4 600 aa15.78■□□□□ 0.12
USP48-202ENST00000374730 DNAJC5BQ9UF47 199 aa15.62■□□□□ 0.09
USP48-202ENST00000374730 RNF39Q9H2S5 420 aa15.35■□□□□ 0.05
USP48-202ENST00000374730 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.29■□□□□ 0.048e-8■■■■□ 24
USP48-202ENST00000374730 C1QBPQ07021 282 aaKnown RBP15.17■□□□□ 0.02
USP48-202ENST00000374730 SLC4A1APQ9BWU0 796 aaKnown RBP15.14■□□□□ 0.01
USP48-202ENST00000374730 CACNB1Q02641 598 aaPredicted RBP15.13■□□□□ 0.01
USP48-202ENST00000374730 SLC4A2P04920 1241 aa15.11■□□□□ 0.01
USP48-202ENST00000374730 U3KPZ7 1027 aaPredicted RBP15.04■□□□□ -0
USP48-202ENST00000374730 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.8□□□□□ -0.04
USP48-202ENST00000374730 HNRNPUL2Q1KMD3 747 aaKnown RBP14.8□□□□□ -0.04
USP48-202ENST00000374730 FOXD4L1Q9NU39 408 aa14.8□□□□□ -0.04
USP48-202ENST00000374730 MYCNP04198 464 aaPredicted RBP14.77□□□□□ -0.05
USP48-202ENST00000374730 APLP2Q06481 763 aa14.73□□□□□ -0.05
USP48-202ENST00000374730 SAMD1Q6SPF0 538 aaPredicted RBP14.71□□□□□ -0.05
USP48-202ENST00000374730 SPINK5Q9NQ38 1064 aaPredicted RBP14.67□□□□□ -0.06
USP48-202ENST00000374730 ZBTB22O15209 634 aa14.64□□□□□ -0.07
USP48-202ENST00000374730 CAPN15O75808 1086 aa14.64□□□□□ -0.07
USP48-202ENST00000374730 ZNF219Q9P2Y4 722 aaPredicted RBP14.54□□□□□ -0.08
USP48-202ENST00000374730 DSG3P32926 999 aa14.49□□□□□ -0.09
USP48-202ENST00000374730 TRHP20396 242 aaPredicted RBP14.48□□□□□ -0.09
USP48-202ENST00000374730 ATXN8OSP0DMR3 200 aa14.35□□□□□ -0.11
USP48-202ENST00000374730 CSRNP3Q8WYN3 585 aa14.33□□□□□ -0.12
USP48-202ENST00000374730 EHMT2Q96KQ7 1210 aa14.31□□□□□ -0.12
USP48-202ENST00000374730 ATF5Q9Y2D1 282 aaPredicted RBP14.31□□□□□ -0.12
USP48-202ENST00000374730 ABCB7O75027 752 aa14.3□□□□□ -0.12
USP48-202ENST00000374730 POLA2Q14181 598 aa14.19□□□□□ -0.14
USP48-202ENST00000374730 ZBTB12Q9Y330 459 aaPredicted RBP14.02□□□□□ -0.17
USP48-202ENST00000374730 RBM42Q9BTD8 480 aaKnown RBP13.87□□□□□ -0.19
USP48-202ENST00000374730 FBLN2P98095 1184 aa13.8□□□□□ -0.2
USP48-202ENST00000374730 OSCARQ8IYS5 282 aa13.73□□□□□ -0.21
USP48-202ENST00000374730 MKRN4PQ13434 485 aaPredicted RBP13.7□□□□□ -0.22
USP48-202ENST00000374730 AKT1S1Q96B36 256 aa13.61□□□□□ -0.23
USP48-202ENST00000374730 SPDYE2BA6NHP3 402 aa13.6□□□□□ -0.23
USP48-202ENST00000374730 SPDYE6P0CI01 402 aa13.6□□□□□ -0.23
USP48-202ENST00000374730 SPDYE2Q495Y8 402 aa13.6□□□□□ -0.23
USP48-202ENST00000374730 SSUH2Q9Y2M2 353 aa13.45□□□□□ -0.26
USP48-202ENST00000374730 REM2Q8IYK8 340 aaPredicted RBP13.44□□□□□ -0.26
USP48-202ENST00000374730 ZNF692Q9BU19 519 aaPredicted RBP13.44□□□□□ -0.26
USP48-202ENST00000374730 CHRDL2Q6WN34 429 aa13.36□□□□□ -0.27
USP48-202ENST00000374730 PITPNM1O00562 1244 aa13.29□□□□□ -0.28
USP48-202ENST00000374730 POTEHQ6S545 545 aa13.28□□□□□ -0.28
USP48-202ENST00000374730 SPDYE4A6NLX3 237 aa13.26□□□□□ -0.29
USP48-202ENST00000374730 PABPN1Q86U42 306 aaKnown RBP eCLIP13.26□□□□□ -0.29
USP48-202ENST00000374730 SPDYE1Q8NFV5 336 aaPredicted RBP13.26□□□□□ -0.29
USP48-202ENST00000374730 CLEC11AQ9Y240 323 aa13.15□□□□□ -0.3
USP48-202ENST00000374730 FXR2P51116 673 aaKnown RBP eCLIP13.12□□□□□ -0.31
USP48-202ENST00000374730 PIP4P2Q8N4L2 257 aa13.12□□□□□ -0.31
USP48-202ENST00000374730 PROM2Q8N271 834 aa13.05□□□□□ -0.32
USP48-202ENST00000374730 STAG3Q9UJ98 1225 aa13.03□□□□□ -0.32
USP48-202ENST00000374730 PRR29P0C7W0 189 aa13.02□□□□□ -0.33
USP48-202ENST00000374730 FKBP8Q14318 412 aa12.97□□□□□ -0.33
USP48-202ENST00000374730 PRKAR2AP13861 404 aaKnown RBP12.95□□□□□ -0.34
USP48-202ENST00000374730 CHADLQ6NUI6 762 aa12.84□□□□□ -0.35
USP48-202ENST00000374730 CREBZFQ9NS37 354 aa12.78□□□□□ -0.36
USP48-202ENST00000374730 HAX1O00165 279 aa12.75□□□□□ -0.37
USP48-202ENST00000374730 FARP1Q9Y4F1 1045 aaPredicted RBP12.74□□□□□ -0.37
USP48-202ENST00000374730 C19orf67A6NJJ6 358 aa12.69□□□□□ -0.38
USP48-202ENST00000374730 FBXO3Q9UK99 471 aa12.65□□□□□ -0.38
USP48-202ENST00000374730 SP7Q8TDD2 431 aaPredicted RBP12.64□□□□□ -0.39
USP48-202ENST00000374730 MNX1P50219 401 aaPredicted RBP12.62□□□□□ -0.39
USP48-202ENST00000374730 PLEKHG5O94827 1062 aa12.6□□□□□ -0.39
USP48-202ENST00000374730 EVX2Q03828 476 aa12.6□□□□□ -0.39
USP48-202ENST00000374730 NPM1P06748 294 aaKnown RBP eCLIP12.59□□□□□ -0.39
USP48-202ENST00000374730 MIER1Q8N108 512 aa12.58□□□□□ -0.4
USP48-202ENST00000374730 CD44P16070 742 aaKnown RBP12.57□□□□□ -0.4
USP48-202ENST00000374730 PLCD3Q8N3E9 789 aa12.54□□□□□ -0.4
USP48-202ENST00000374730 ZBTB47Q9UFB7 747 aaPredicted RBP12.49□□□□□ -0.41
USP48-202ENST00000374730 PAK3O75914 559 aaPredicted RBP12.46□□□□□ -0.41
USP48-202ENST00000374730 VASPP50552 380 aaPredicted RBP12.46□□□□□ -0.41
USP48-202ENST00000374730 ZRANB1Q9UGI0 708 aa12.44□□□□□ -0.42
USP48-202ENST00000374730 ZNF579Q8NAF0 562 aaKnown RBP12.43□□□□□ -0.42
USP48-202ENST00000374730 CLCN6P51797 869 aa12.42□□□□□ -0.42
USP48-202ENST00000374730 GABBR2O75899 941 aa12.38□□□□□ -0.43
USP48-202ENST00000374730 NUBP1P53384 320 aa12.33□□□□□ -0.44
USP48-202ENST00000374730 RASEFQ8IZ41 740 aa12.32□□□□□ -0.44
USP48-202ENST00000374730 TSPYL2Q9H2G4 693 aaPredicted RBP12.32□□□□□ -0.44
USP48-202ENST00000374730 CCDC61Q9Y6R9 512 aa12.29□□□□□ -0.44
USP48-202ENST00000374730 PHF12Q96QT6 1004 aa12.28□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms