RNA–Protein interactions for RNA: ENST00000360019.7

CLN3-206, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,840 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-206ENST00000360019 CHKB-CPT1BH3BT56 60 aa9.22□□□□□ -0.93
CLN3-206ENST00000360019 LCA10Q71F78 164 aa9.18□□□□□ -0.94
CLN3-206ENST00000360019 S4R3F8 94 aa9.17□□□□□ -0.94
CLN3-206ENST00000360019 LCE2CQ5TA81 110 aa9.15□□□□□ -0.95
CLN3-206ENST00000360019 KRTAP3-3Q9BYR6 98 aa9.15□□□□□ -0.95
CLN3-206ENST00000360019 SMIM26A0A096LP01 95 aa9.07□□□□□ -0.96
CLN3-206ENST00000360019 SPTSSBQ8NFR3 76 aa9.03□□□□□ -0.96
CLN3-206ENST00000360019 CSAG1Q6PB30 78 aa8.97□□□□□ -0.97
CLN3-206ENST00000360019 MT1HP80294 61 aa8.95□□□□□ -0.98
CLN3-206ENST00000360019 Q1T7F1 81 aa8.94□□□□□ -0.98
CLN3-206ENST00000360019 LINC01558Q9Y6Z2 57 aa8.92□□□□□ -0.98
CLN3-206ENST00000360019 SVIPQ8NHG7 77 aa8.91□□□□□ -0.98
CLN3-206ENST00000360019 V9GYY9 64 aa8.88□□□□□ -0.99
CLN3-206ENST00000360019 PRR15LQ9BU68 103 aa8.82□□□□□ -1
CLN3-206ENST00000360019 A0A1B0GU69 56 aa8.82□□□□□ -1
CLN3-206ENST00000360019 M0R2T5 61 aa8.82□□□□□ -1
CLN3-206ENST00000360019 PSPHP1O15172 72 aa8.81□□□□□ -1
CLN3-206ENST00000360019 KRTAP3-2Q9BYR7 98 aa8.79□□□□□ -1
CLN3-206ENST00000360019 SEC61GP60059 68 aa8.77□□□□□ -1
CLN3-206ENST00000360019 H0YAA0 97 aa8.77□□□□□ -1.01
CLN3-206ENST00000360019 KRTAP10-6P60371 365 aaPredicted RBP8.76□□□□□ -1.01
CLN3-206ENST00000360019 ADM2Q7Z4H4 148 aa8.76□□□□□ -1.01
CLN3-206ENST00000360019 Q5VV11 94 aa8.74□□□□□ -1.01
CLN3-206ENST00000360019 P0C880 135 aa8.72□□□□□ -1.01
CLN3-206ENST00000360019 LCE2AQ5TA79 106 aaPredicted RBP8.7□□□□□ -1.02
CLN3-206ENST00000360019 KRTAP9-8Q9BYQ0 159 aa8.61□□□□□ -1.03
CLN3-206ENST00000360019 A0A1B0GU33 70 aa8.59□□□□□ -1.03
CLN3-206ENST00000360019 LORP23490 312 aaPredicted RBP8.59□□□□□ -1.03
CLN3-206ENST00000360019 MT2AP02795 61 aa8.57□□□□□ -1.04
CLN3-206ENST00000360019 UQCR11O14957 56 aa8.52□□□□□ -1.04
CLN3-206ENST00000360019 MT1FP04733 61 aa8.52□□□□□ -1.04
CLN3-206ENST00000360019 A6NED7 52 aa8.52□□□□□ -1.05
CLN3-206ENST00000360019 KRTAP13-4Q3LI77 160 aa8.52□□□□□ -1.05
CLN3-206ENST00000360019 SPATA8Q6RVD6 105 aa8.49□□□□□ -1.05
CLN3-206ENST00000360019 KRTAP10-10P60014 251 aa8.47□□□□□ -1.05
CLN3-206ENST00000360019 R4GN34 69 aa8.45□□□□□ -1.06
CLN3-206ENST00000360019 M0QZ58 72 aa8.44□□□□□ -1.06
CLN3-206ENST00000360019 MIR22HGQ0VDD5 57 aa8.43□□□□□ -1.06
CLN3-206ENST00000360019 CRIPTQ9P021 101 aa8.42□□□□□ -1.06
CLN3-206ENST00000360019 A8MU10 97 aa8.38□□□□□ -1.07
CLN3-206ENST00000360019 CDC42SE1Q9NRR8 79 aa8.35□□□□□ -1.07
CLN3-206ENST00000360019 BRK1Q8WUW1 75 aa8.33□□□□□ -1.08
CLN3-206ENST00000360019 KRTAP19-1Q8IUB9 90 aa8.33□□□□□ -1.08
CLN3-206ENST00000360019 A0A0D9SG42 100 aa8.31□□□□□ -1.08
CLN3-206ENST00000360019 SPRR2GQ9BYE4 73 aa8.31□□□□□ -1.08
CLN3-206ENST00000360019 LINC01554Q52M75 96 aa8.3□□□□□ -1.08
CLN3-206ENST00000360019 KRTAP9-3Q9BYQ3 159 aa8.3□□□□□ -1.08
CLN3-206ENST00000360019 KRTAP12-1P59990 96 aa8.16□□□□□ -1.1
CLN3-206ENST00000360019 KRTAP12-2P59991 146 aa8.15□□□□□ -1.11
CLN3-206ENST00000360019 A6NN06 94 aa8.13□□□□□ -1.11
CLN3-206ENST00000360019 KRTAP19-8Q3LI54 63 aa8.12□□□□□ -1.11
CLN3-206ENST00000360019 SPINT4Q6UDR6 99 aa8.12□□□□□ -1.11
CLN3-206ENST00000360019 USH2AO75445 5202 aa8.11□□□□□ -1.11
CLN3-206ENST00000360019 LCE2BO14633 110 aa8.1□□□□□ -1.11
CLN3-206ENST00000360019 PRO0628Q9UI54 55 aa8.07□□□□□ -1.12
CLN3-206ENST00000360019 MT1BP07438 61 aa8.04□□□□□ -1.12
CLN3-206ENST00000360019 K7ERS5 55 aa8.02□□□□□ -1.13
CLN3-206ENST00000360019 PLAC4Q8WY50 150 aa7.97□□□□□ -1.13
CLN3-206ENST00000360019 FSIP2Q5CZC0 6907 aa7.92□□□□□ -1.14
CLN3-206ENST00000360019 LCE2DQ5TA82 110 aaPredicted RBP7.92□□□□□ -1.14
CLN3-206ENST00000360019 SSPOA2VEC9 5147 aa7.9□□□□□ -1.15
CLN3-206ENST00000360019 CAMK2N1Q7Z7J9 78 aa7.89□□□□□ -1.15
CLN3-206ENST00000360019 PMAIP1Q13794 54 aa7.86□□□□□ -1.15
CLN3-206ENST00000360019 MT1XP80297 61 aa7.75□□□□□ -1.17
CLN3-206ENST00000360019 C10orf95Q9H7T3 257 aa7.74□□□□□ -1.17
CLN3-206ENST00000360019 KRTAP10-5P60370 271 aa7.73□□□□□ -1.17
CLN3-206ENST00000360019 ROMO1P60602 79 aa7.71□□□□□ -1.17
CLN3-206ENST00000360019 KRTAP9-2Q9BYQ4 174 aa7.69□□□□□ -1.18
CLN3-206ENST00000360019 PRO2289Q9P1D8 64 aa7.62□□□□□ -1.19
CLN3-206ENST00000360019 KRTAP19-6Q3LI70 58 aa7.62□□□□□ -1.19
CLN3-206ENST00000360019 FCGBPQ9Y6R7 5405 aaPredicted RBP7.52□□□□□ -1.21
CLN3-206ENST00000360019 KTN1-AS1Q86SY8 53 aa7.5□□□□□ -1.21
CLN3-206ENST00000360019 TNP1P09430 55 aa7.48□□□□□ -1.21
CLN3-206ENST00000360019 KRTAP25-1Q3LHN0 102 aa7.47□□□□□ -1.21
CLN3-206ENST00000360019 KRTAP10-7P60409 375 aaPredicted RBP7.44□□□□□ -1.22
CLN3-206ENST00000360019 PRAC1Q96KF2 57 aa7.42□□□□□ -1.22
CLN3-206ENST00000360019 KMT2DO14686 5537 aa7.41□□□□□ -1.22
CLN3-206ENST00000360019 CRCT1Q9UGL9 99 aa7.39□□□□□ -1.23
CLN3-206ENST00000360019 KRTAP10-12P60413 245 aa7.34□□□□□ -1.24
CLN3-206ENST00000360019 MACF1Q9UPN3 7388 aaKnown RBP7.28□□□□□ -1.24
CLN3-206ENST00000360019 LCE3AQ5TA76 89 aa7.24□□□□□ -1.25
CLN3-206ENST00000360019 KRTAP23-1A1A580 65 aa7.2□□□□□ -1.26
CLN3-206ENST00000360019 KRTAP4-8A0A0G2JLE6 195 aa7.19□□□□□ -1.26
CLN3-206ENST00000360019 KRTAP4-8Q9BYQ9 185 aa7.19□□□□□ -1.26
CLN3-206ENST00000360019 PP632Q6XCG6 107 aa7.17□□□□□ -1.26
CLN3-206ENST00000360019 KRTAP9-6A0A140TA67 174 aa7.12□□□□□ -1.27
CLN3-206ENST00000360019 SYNE2Q8WXH0 6885 aaKnown RBP7.11□□□□□ -1.27
CLN3-206ENST00000360019 KRTAP8-1Q8IUC2 63 aa7.06□□□□□ -1.28
CLN3-206ENST00000360019 KRTAP19-5Q3LI72 72 aa6.97□□□□□ -1.29
CLN3-206ENST00000360019 KRTAP12-3P60328 96 aa6.93□□□□□ -1.3
CLN3-206ENST00000360019 KRTAP19-7Q3SYF9 63 aa6.92□□□□□ -1.3
CLN3-206ENST00000360019 MUC12Q9UKN1 5478 aa6.89□□□□□ -1.31
CLN3-206ENST00000360019 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.85□□□□□ -1.31
CLN3-206ENST00000360019 MT1EP04732 61 aa6.8□□□□□ -1.32
CLN3-206ENST00000360019 KRTAP15-1Q3LI76 137 aa6.75□□□□□ -1.33
CLN3-206ENST00000360019 SPRR2FQ96RM1 72 aa6.75□□□□□ -1.33
CLN3-206ENST00000360019 MDN1Q9NU22 5596 aa6.73□□□□□ -1.33
CLN3-206ENST00000360019 KRTAP5-9P26371 169 aa6.72□□□□□ -1.33
CLN3-206ENST00000360019 KRTAP6-3Q3LI67 103 aa6.64□□□□□ -1.35
CLN3-206ENST00000360019 MT1LQ93083 61 aa6.64□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 106 ms