RNA–Protein interactions for RNA: ENST00000357811.7

COL13A1-202, Transcript of collagen type XIII alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL13A1, Length 2,991 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL13A1-202ENST00000357811 COX6B2Q6YFQ2 88 aa10.71□□□□□ -0.69
COL13A1-202ENST00000357811 ROMO1P60602 79 aa10.7□□□□□ -0.7
COL13A1-202ENST00000357811 TNXBP22105 4242 aa10.7□□□□□ -0.7
COL13A1-202ENST00000357811 H1FX-AS1Q4G0G2 97 aa10.68□□□□□ -0.7
COL13A1-202ENST00000357811 Q5VSD8 79 aa10.67□□□□□ -0.7
COL13A1-202ENST00000357811 RYR3Q15413 4870 aa10.62□□□□□ -0.71
COL13A1-202ENST00000357811 KIAA1109Q2LD37 5005 aa10.6□□□□□ -0.71
COL13A1-202ENST00000357811 KRTAP10-8P60410 259 aa10.6□□□□□ -0.71
COL13A1-202ENST00000357811 KRTAP17-1Q9BYP8 105 aa10.59□□□□□ -0.71
COL13A1-202ENST00000357811 LPAP08519 4548 aa10.53□□□□□ -0.72
COL13A1-202ENST00000357811 XP32Q5T750 250 aa10.53□□□□□ -0.72
COL13A1-202ENST00000357811 A0A0D9SG42 100 aa10.5□□□□□ -0.73
COL13A1-202ENST00000357811 RPL37P61927 97 aaKnown RBP10.5□□□□□ -0.73
COL13A1-202ENST00000357811 KRTAP3-3Q9BYR6 98 aa10.49□□□□□ -0.73
COL13A1-202ENST00000357811 RYR1P21817 5038 aa10.47□□□□□ -0.73
COL13A1-202ENST00000357811 LRP2P98164 4655 aa10.44□□□□□ -0.74
COL13A1-202ENST00000357811 P0C880 135 aa10.43□□□□□ -0.74
COL13A1-202ENST00000357811 K7ERS5 55 aa10.42□□□□□ -0.74
COL13A1-202ENST00000357811 KRTAP13-4Q3LI77 160 aa10.42□□□□□ -0.74
COL13A1-202ENST00000357811 KRTAP10-6P60371 365 aaPredicted RBP10.41□□□□□ -0.74
COL13A1-202ENST00000357811 S4R3F8 94 aa10.39□□□□□ -0.75
COL13A1-202ENST00000357811 KRTAP3-2Q9BYR7 98 aa10.32□□□□□ -0.76
COL13A1-202ENST00000357811 SPINT4Q6UDR6 99 aa10.31□□□□□ -0.76
COL13A1-202ENST00000357811 MT1HL1P0DM35 61 aa10.31□□□□□ -0.76
COL13A1-202ENST00000357811 EPPK1P58107 5090 aaKnown RBP10.27□□□□□ -0.77
COL13A1-202ENST00000357811 ABCA13Q86UQ4 5058 aa10.24□□□□□ -0.77
COL13A1-202ENST00000357811 C10orf95Q9H7T3 257 aa10.14□□□□□ -0.79
COL13A1-202ENST00000357811 TPRXLQ17RH7 258 aa10.13□□□□□ -0.79
COL13A1-202ENST00000357811 NDUFAF8A1L188 74 aa10.11□□□□□ -0.79
COL13A1-202ENST00000357811 KRTAP12-2P59991 146 aa10.07□□□□□ -0.8
COL13A1-202ENST00000357811 KRTAP4-5Q9BYR2 181 aa10.07□□□□□ -0.8
COL13A1-202ENST00000357811 A0A0A0MQY5 61 aa9.96□□□□□ -0.82
COL13A1-202ENST00000357811 KRTAP12-1P59990 96 aa9.91□□□□□ -0.82
COL13A1-202ENST00000357811 KRTAP15-1Q3LI76 137 aa9.89□□□□□ -0.83
COL13A1-202ENST00000357811 MUC2Q02817 5179 aa9.82□□□□□ -0.84
COL13A1-202ENST00000357811 M0QZ58 72 aa9.8□□□□□ -0.84
COL13A1-202ENST00000357811 KRTAP4-1Q9BYQ7 146 aa9.73□□□□□ -0.85
COL13A1-202ENST00000357811 R4GN34 69 aa9.73□□□□□ -0.85
COL13A1-202ENST00000357811 LORP23490 312 aaPredicted RBP9.71□□□□□ -0.86
COL13A1-202ENST00000357811 HERC2O95714 4834 aa9.7□□□□□ -0.86
COL13A1-202ENST00000357811 MUC17Q685J3 4493 aa9.69□□□□□ -0.86
COL13A1-202ENST00000357811 J3QL48 77 aa9.68□□□□□ -0.86
COL13A1-202ENST00000357811 SEC61BP60468 96 aaKnown RBP9.64□□□□□ -0.87
COL13A1-202ENST00000357811 HERC1Q15751 4861 aa9.41□□□□□ -0.9
COL13A1-202ENST00000357811 KRTAP19-2Q3LHN2 52 aa9.36□□□□□ -0.91
COL13A1-202ENST00000357811 FAT4Q6V0I7 4981 aa9.32□□□□□ -0.92
COL13A1-202ENST00000357811 LUZP6Q538Z0 58 aa9.31□□□□□ -0.92
COL13A1-202ENST00000357811 CAMK2N1Q7Z7J9 78 aa9.28□□□□□ -0.92
COL13A1-202ENST00000357811 PCLOQ9Y6V0 5065 aa9.27□□□□□ -0.93
COL13A1-202ENST00000357811 PLAC4Q8WY50 150 aa9.27□□□□□ -0.93
COL13A1-202ENST00000357811 FLGP20930 4061 aaPredicted RBP9.19□□□□□ -0.94
COL13A1-202ENST00000357811 BIRC6Q9NR09 4857 aa9.17□□□□□ -0.94
COL13A1-202ENST00000357811 RNF213Q63HN8 5207 aa9.1□□□□□ -0.95
COL13A1-202ENST00000357811 HMCN2Q8NDA2 5059 aa9.05□□□□□ -0.96
COL13A1-202ENST00000357811 UBR4Q5T4S7 5183 aa8.93□□□□□ -0.98
COL13A1-202ENST00000357811 M0R2T5 61 aa8.89□□□□□ -0.99
COL13A1-202ENST00000357811 LCE2CQ5TA81 110 aa8.85□□□□□ -0.99
COL13A1-202ENST00000357811 TNP1P09430 55 aa8.8□□□□□ -1
COL13A1-202ENST00000357811 PP632Q6XCG6 107 aa8.79□□□□□ -1
COL13A1-202ENST00000357811 KRTAP19-1Q8IUB9 90 aa8.68□□□□□ -1.02
COL13A1-202ENST00000357811 MT1HP80294 61 aa8.63□□□□□ -1.03
COL13A1-202ENST00000357811 KRTAP10-10P60014 251 aa8.62□□□□□ -1.03
COL13A1-202ENST00000357811 SPRR2GQ9BYE4 73 aa8.6□□□□□ -1.03
COL13A1-202ENST00000357811 MT1FP04733 61 aa8.57□□□□□ -1.04
COL13A1-202ENST00000357811 MT2AP02795 61 aa8.52□□□□□ -1.05
COL13A1-202ENST00000357811 LCE3AQ5TA76 89 aa8.44□□□□□ -1.06
COL13A1-202ENST00000357811 KRTAP9-8Q9BYQ0 159 aa8.42□□□□□ -1.06
COL13A1-202ENST00000357811 KRTAP23-1A1A580 65 aa8.34□□□□□ -1.07
COL13A1-202ENST00000357811 SPRR5A0A1B0GTR4 108 aa8.28□□□□□ -1.08
COL13A1-202ENST00000357811 MT1BP07438 61 aa8.22□□□□□ -1.09
COL13A1-202ENST00000357811 KRTAP10-5P60370 271 aa8.19□□□□□ -1.1
COL13A1-202ENST00000357811 USH2AO75445 5202 aa8.18□□□□□ -1.1
COL13A1-202ENST00000357811 MT1XP80297 61 aa8.17□□□□□ -1.1
COL13A1-202ENST00000357811 KRTAP19-8Q3LI54 63 aa8.17□□□□□ -1.1
COL13A1-202ENST00000357811 PRO2289Q9P1D8 64 aa8.07□□□□□ -1.12
COL13A1-202ENST00000357811 KRTAP10-7P60409 375 aaPredicted RBP8.06□□□□□ -1.12
COL13A1-202ENST00000357811 KRTAP10-12P60413 245 aa8.04□□□□□ -1.12
COL13A1-202ENST00000357811 KRTAP9-3Q9BYQ3 159 aa8.04□□□□□ -1.12
COL13A1-202ENST00000357811 KMT2DO14686 5537 aa8.02□□□□□ -1.12
COL13A1-202ENST00000357811 KRTAP8-1Q8IUC2 63 aa8.02□□□□□ -1.13
COL13A1-202ENST00000357811 KRTAP12-3P60328 96 aa7.98□□□□□ -1.13
COL13A1-202ENST00000357811 LCE2BO14633 110 aa7.82□□□□□ -1.16
COL13A1-202ENST00000357811 INE1O15225 51 aa7.82□□□□□ -1.16
COL13A1-202ENST00000357811 KRTAP19-5Q3LI72 72 aa7.69□□□□□ -1.18
COL13A1-202ENST00000357811 KRTAP4-8A0A0G2JLE6 195 aa7.67□□□□□ -1.18
COL13A1-202ENST00000357811 KRTAP4-8Q9BYQ9 185 aa7.67□□□□□ -1.18
COL13A1-202ENST00000357811 FSIP2Q5CZC0 6907 aa7.63□□□□□ -1.19
COL13A1-202ENST00000357811 LCE2AQ5TA79 106 aaPredicted RBP7.5□□□□□ -1.21
COL13A1-202ENST00000357811 LCE3CQ5T5A8 94 aa7.46□□□□□ -1.21
COL13A1-202ENST00000357811 KRTAP4-7Q9BYR0 210 aa7.4□□□□□ -1.23
COL13A1-202ENST00000357811 KRTAP9-6A8MVA2 160 aa7.32□□□□□ -1.24
COL13A1-202ENST00000357811 KRTAP19-7Q3SYF9 63 aa7.28□□□□□ -1.24
COL13A1-202ENST00000357811 SSPOA2VEC9 5147 aa7.28□□□□□ -1.24
COL13A1-202ENST00000357811 LCE2DQ5TA82 110 aaPredicted RBP7.08□□□□□ -1.28
COL13A1-202ENST00000357811 MT1LQ93083 61 aa7.05□□□□□ -1.28
COL13A1-202ENST00000357811 MUC12Q9UKN1 5478 aa7.05□□□□□ -1.28
COL13A1-202ENST00000357811 MT1EP04732 61 aa7.04□□□□□ -1.28
COL13A1-202ENST00000357811 FCGBPQ9Y6R7 5405 aaPredicted RBP7.03□□□□□ -1.28
COL13A1-202ENST00000357811 DSTQ03001 7570 aaKnown RBP6.96□□□□□ -1.29
COL13A1-202ENST00000357811 KRTAP4-3Q9BYR4 195 aa6.93□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms