RNA–Protein interactions for RNA: ENST00000357604.9

UPF2-202, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,193 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-202ENST00000357604 H7BZZ5 65 aa4.62□□□□□ -1.67
UPF2-202ENST00000357604 A0A0A0MQY5 61 aa4.61□□□□□ -1.67
UPF2-202ENST00000357604 CAMK2N1Q7Z7J9 78 aa4.61□□□□□ -1.67
UPF2-202ENST00000357604 KRTAP10-10P60014 251 aa4.61□□□□□ -1.67
UPF2-202ENST00000357604 EPPK1P58107 5090 aaKnown RBP4.61□□□□□ -1.67
UPF2-202ENST00000357604 LINC01554Q52M75 96 aa4.58□□□□□ -1.68
UPF2-202ENST00000357604 SPINT4Q6UDR6 99 aa4.58□□□□□ -1.68
UPF2-202ENST00000357604 MUC17Q685J3 4493 aa4.57□□□□□ -1.68
UPF2-202ENST00000357604 M0QZ58 72 aa4.57□□□□□ -1.68
UPF2-202ENST00000357604 PSPHP1O15172 72 aa4.57□□□□□ -1.68
UPF2-202ENST00000357604 MYCBP2O75592 4640 aa4.55□□□□□ -1.68
UPF2-202ENST00000357604 UQCR11O14957 56 aa4.54□□□□□ -1.68
UPF2-202ENST00000357604 HERC1Q15751 4861 aa4.53□□□□□ -1.68
UPF2-202ENST00000357604 KIAA1109Q2LD37 5005 aa4.53□□□□□ -1.68
UPF2-202ENST00000357604 A0A1B0GU33 70 aa4.53□□□□□ -1.68
UPF2-202ENST00000357604 TNXBP22105 4242 aa4.53□□□□□ -1.68
UPF2-202ENST00000357604 PCLOQ9Y6V0 5065 aa4.5□□□□□ -1.69
UPF2-202ENST00000357604 H0YAA0 97 aa4.47□□□□□ -1.69
UPF2-202ENST00000357604 MIR22HGQ0VDD5 57 aa4.46□□□□□ -1.7
UPF2-202ENST00000357604 LINC01558Q9Y6Z2 57 aa4.45□□□□□ -1.7
UPF2-202ENST00000357604 A0A0D9SG42 100 aa4.45□□□□□ -1.7
UPF2-202ENST00000357604 LUZP6Q538Z0 58 aa4.45□□□□□ -1.7
UPF2-202ENST00000357604 PRO2289Q9P1D8 64 aa4.43□□□□□ -1.7
UPF2-202ENST00000357604 MT1HP80294 61 aa4.42□□□□□ -1.7
UPF2-202ENST00000357604 Q5VV11 94 aa4.42□□□□□ -1.7
UPF2-202ENST00000357604 KRTAP4-1Q9BYQ7 146 aa4.42□□□□□ -1.7
UPF2-202ENST00000357604 ABCA13Q86UQ4 5058 aa4.4□□□□□ -1.7
UPF2-202ENST00000357604 SRRM2Q9UQ35 2752 aaKnown RBP4.39□□□□□ -1.71
UPF2-202ENST00000357604 Q1T7F1 81 aa4.38□□□□□ -1.71
UPF2-202ENST00000357604 KRTAP10-6P60371 365 aaPredicted RBP4.36□□□□□ -1.71
UPF2-202ENST00000357604 CDC42SE1Q9NRR8 79 aa4.35□□□□□ -1.71
UPF2-202ENST00000357604 KRTAP3-1Q9BYR8 98 aa4.34□□□□□ -1.71
UPF2-202ENST00000357604 NDUFAF8A1L188 74 aa4.33□□□□□ -1.72
UPF2-202ENST00000357604 CYSTM1Q9H1C7 97 aa4.3□□□□□ -1.72
UPF2-202ENST00000357604 LRP1Q07954 4544 aaKnown RBP4.3□□□□□ -1.72
UPF2-202ENST00000357604 SPATA8Q6RVD6 105 aa4.25□□□□□ -1.73
UPF2-202ENST00000357604 PRAC1Q96KF2 57 aa4.23□□□□□ -1.73
UPF2-202ENST00000357604 P0C880 135 aa4.2□□□□□ -1.74
UPF2-202ENST00000357604 A6NN06 94 aa4.19□□□□□ -1.74
UPF2-202ENST00000357604 MT2AP02795 61 aa4.18□□□□□ -1.74
UPF2-202ENST00000357604 KRTAP3-3Q9BYR6 98 aa4.17□□□□□ -1.74
UPF2-202ENST00000357604 HMCN2Q8NDA2 5059 aa4.15□□□□□ -1.74
UPF2-202ENST00000357604 TNP1P09430 55 aa4.15□□□□□ -1.74
UPF2-202ENST00000357604 LCE2CQ5TA81 110 aa4.15□□□□□ -1.74
UPF2-202ENST00000357604 LORP23490 312 aaPredicted RBP4.14□□□□□ -1.75
UPF2-202ENST00000357604 LCE2DQ5TA82 110 aaPredicted RBP4.13□□□□□ -1.75
UPF2-202ENST00000357604 ROMO1P60602 79 aa4.1□□□□□ -1.75
UPF2-202ENST00000357604 MT1FP04733 61 aa4.09□□□□□ -1.75
UPF2-202ENST00000357604 LCE2AQ5TA79 106 aaPredicted RBP4.09□□□□□ -1.76
UPF2-202ENST00000357604 A8MU10 97 aa4.08□□□□□ -1.76
UPF2-202ENST00000357604 LPAP08519 4548 aa4.08□□□□□ -1.76
UPF2-202ENST00000357604 KRTAP19-2Q3LHN2 52 aa4.08□□□□□ -1.76
UPF2-202ENST00000357604 SPRR2GQ9BYE4 73 aa4.05□□□□□ -1.76
UPF2-202ENST00000357604 KRTAP9-2Q9BYQ4 174 aa4.02□□□□□ -1.77
UPF2-202ENST00000357604 KRTAP9-8Q9BYQ0 159 aa4.02□□□□□ -1.77
UPF2-202ENST00000357604 KRTAP3-2Q9BYR7 98 aa4.02□□□□□ -1.77
UPF2-202ENST00000357604 KRTAP25-1Q3LHN0 102 aa4.01□□□□□ -1.77
UPF2-202ENST00000357604 KRTAP23-1A1A580 65 aa3.98□□□□□ -1.77
UPF2-202ENST00000357604 RNF213Q63HN8 5207 aa3.98□□□□□ -1.77
UPF2-202ENST00000357604 CRCT1Q9UGL9 99 aa3.96□□□□□ -1.77
UPF2-202ENST00000357604 PP632Q6XCG6 107 aa3.96□□□□□ -1.78
UPF2-202ENST00000357604 FLGP20930 4061 aaPredicted RBP3.94□□□□□ -1.78
UPF2-202ENST00000357604 KRTAP9-3Q9BYQ3 159 aa3.94□□□□□ -1.78
UPF2-202ENST00000357604 KRTAP19-8Q3LI54 63 aa3.93□□□□□ -1.78
UPF2-202ENST00000357604 KRTAP12-1P59990 96 aa3.92□□□□□ -1.78
UPF2-202ENST00000357604 KRTAP9-6A0A140TA67 174 aa3.92□□□□□ -1.78
UPF2-202ENST00000357604 KRTAP12-2P59991 146 aa3.91□□□□□ -1.78
UPF2-202ENST00000357604 LRP2P98164 4655 aa3.91□□□□□ -1.78
UPF2-202ENST00000357604 KRTAP13-4Q3LI77 160 aa3.9□□□□□ -1.79
UPF2-202ENST00000357604 KRTAP19-1Q8IUB9 90 aa3.85□□□□□ -1.79
UPF2-202ENST00000357604 KRTAP10-12P60413 245 aa3.84□□□□□ -1.8
UPF2-202ENST00000357604 KRTAP10-5P60370 271 aa3.83□□□□□ -1.8
UPF2-202ENST00000357604 KRTAP8-1Q8IUC2 63 aa3.83□□□□□ -1.8
UPF2-202ENST00000357604 FAT4Q6V0I7 4981 aa3.83□□□□□ -1.8
UPF2-202ENST00000357604 KRTAP19-6Q3LI70 58 aa3.8□□□□□ -1.8
UPF2-202ENST00000357604 C10orf95Q9H7T3 257 aa3.79□□□□□ -1.8
UPF2-202ENST00000357604 LCE2BO14633 110 aa3.76□□□□□ -1.81
UPF2-202ENST00000357604 MT1BP07438 61 aa3.76□□□□□ -1.81
UPF2-202ENST00000357604 UBR4Q5T4S7 5183 aa3.73□□□□□ -1.81
UPF2-202ENST00000357604 MT1XP80297 61 aa3.64□□□□□ -1.83
UPF2-202ENST00000357604 SPRR2FQ96RM1 72 aa3.64□□□□□ -1.83
UPF2-202ENST00000357604 SPRR2EP22531 72 aa3.6□□□□□ -1.83
UPF2-202ENST00000357604 SPRR2BP35325 72 aa3.6□□□□□ -1.83
UPF2-202ENST00000357604 SPRR2AP35326 72 aa3.6□□□□□ -1.83
UPF2-202ENST00000357604 LCE3AQ5TA76 89 aa3.59□□□□□ -1.84
UPF2-202ENST00000357604 KRTAP12-3P60328 96 aa3.57□□□□□ -1.84
UPF2-202ENST00000357604 KRTAP19-4Q3LI73 84 aa3.57□□□□□ -1.84
UPF2-202ENST00000357604 KRTAP6-3Q3LI67 103 aa3.56□□□□□ -1.84
UPF2-202ENST00000357604 KRTAP15-1Q3LI76 137 aa3.55□□□□□ -1.84
UPF2-202ENST00000357604 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.55□□□□□ -1.84
UPF2-202ENST00000357604 INE1O15225 51 aa3.55□□□□□ -1.84
UPF2-202ENST00000357604 KRTAP9-7A8MTY7 169 aa3.54□□□□□ -1.84
UPF2-202ENST00000357604 KRTAP10-7P60409 375 aaPredicted RBP3.52□□□□□ -1.85
UPF2-202ENST00000357604 SPRR2DP22532 72 aa3.51□□□□□ -1.85
UPF2-202ENST00000357604 KRTAP19-5Q3LI72 72 aa3.46□□□□□ -1.86
UPF2-202ENST00000357604 KRTAP20-1Q3LI63 56 aa3.37□□□□□ -1.87
UPF2-202ENST00000357604 MUC2Q02817 5179 aa3.36□□□□□ -1.87
UPF2-202ENST00000357604 MT1GP13640 62 aa3.35□□□□□ -1.87
UPF2-202ENST00000357604 KRTAP4-8A0A0G2JLE6 195 aa3.32□□□□□ -1.88
UPF2-202ENST00000357604 KRTAP4-8Q9BYQ9 185 aa3.32□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 86.4 ms