RNA–Protein interactions for RNA: ENST00000353411.10

SKP1-202, Transcript of S-phase kinase associated protein 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene SKP1, Length 9,474 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKP1-202ENST00000353411 FRAS1Q86XX4 4008 aa2.37□□□□□ -2.03
SKP1-202ENST00000353411 KMT2AQ03164 3969 aa2.37□□□□□ -2.03
SKP1-202ENST00000353411 LCE2BO14633 110 aa2.34□□□□□ -2.04
SKP1-202ENST00000353411 DNHD1Q96M86 4753 aa2.31□□□□□ -2.04
SKP1-202ENST00000353411 HUWE1Q7Z6Z7 4374 aaKnown RBP2.3□□□□□ -2.04
SKP1-202ENST00000353411 LCE2AQ5TA79 106 aaPredicted RBP2.3□□□□□ -2.04
SKP1-202ENST00000353411 VPS13BQ7Z7G8 4022 aa2.3□□□□□ -2.04
SKP1-202ENST00000353411 DNAH3Q8TD57 4116 aa2.27□□□□□ -2.05
SKP1-202ENST00000353411 KRTAP10-10P60014 251 aa2.26□□□□□ -2.05
SKP1-202ENST00000353411 KRTAP19-4Q3LI73 84 aa2.24□□□□□ -2.05
SKP1-202ENST00000353411 LORP23490 312 aaPredicted RBP2.21□□□□□ -2.06
SKP1-202ENST00000353411 FLGP20930 4061 aaPredicted RBP2.19□□□□□ -2.06
SKP1-202ENST00000353411 MYCBP2O75592 4640 aa2.17□□□□□ -2.06
SKP1-202ENST00000353411 DNAH6Q9C0G6 4158 aa2.15□□□□□ -2.07
SKP1-202ENST00000353411 KRTAP12-3P60328 96 aa2.14□□□□□ -2.07
SKP1-202ENST00000353411 KRTAP10-12P60413 245 aa2.13□□□□□ -2.07
SKP1-202ENST00000353411 PRKDCP78527 4128 aaKnown RBP2.13□□□□□ -2.07
SKP1-202ENST00000353411 MT1HL1P0DM35 61 aa2.12□□□□□ -2.07
SKP1-202ENST00000353411 LCE3AQ5TA76 89 aa2.11□□□□□ -2.07
SKP1-202ENST00000353411 ANK3Q12955 4377 aaKnown RBP2.1□□□□□ -2.07
SKP1-202ENST00000353411 SPRR5A0A1B0GTR4 108 aa2.09□□□□□ -2.07
SKP1-202ENST00000353411 KRTAP10-4P60372 401 aaPredicted RBP2.09□□□□□ -2.08
SKP1-202ENST00000353411 DNAH1Q9P2D7 4330 aa2.08□□□□□ -2.08
SKP1-202ENST00000353411 HERC1Q15751 4861 aa2.07□□□□□ -2.08
SKP1-202ENST00000353411 DNAH2Q9P225 4427 aa2.07□□□□□ -2.08
SKP1-202ENST00000353411 MT3P25713 68 aa2.06□□□□□ -2.08
SKP1-202ENST00000353411 LRP1BQ9NZR2 4599 aa2.05□□□□□ -2.08
SKP1-202ENST00000353411 KMT2CQ8NEZ4 4911 aaKnown RBP2.05□□□□□ -2.08
SKP1-202ENST00000353411 RYR3Q15413 4870 aa2.04□□□□□ -2.08
SKP1-202ENST00000353411 DNAH8Q96JB1 4490 aa2.02□□□□□ -2.09
SKP1-202ENST00000353411 PKHD1P08F94 4074 aa2.02□□□□□ -2.09
SKP1-202ENST00000353411 DYNC1H1Q14204 4646 aaKnown RBP2.01□□□□□ -2.09
SKP1-202ENST00000353411 PCLOQ9Y6V0 5065 aa1.99□□□□□ -2.09
SKP1-202ENST00000353411 DNAH10Q8IVF4 4471 aa1.99□□□□□ -2.09
SKP1-202ENST00000353411 BIRC6Q9NR09 4857 aa1.98□□□□□ -2.09
SKP1-202ENST00000353411 DYNC2H1Q8NCM8 4307 aaKnown RBP1.98□□□□□ -2.09
SKP1-202ENST00000353411 KRTAP8-1Q8IUC2 63 aa1.97□□□□□ -2.09
SKP1-202ENST00000353411 KRTAP4-5Q9BYR2 181 aa1.96□□□□□ -2.09
SKP1-202ENST00000353411 RYR2Q92736 4967 aa1.96□□□□□ -2.1
SKP1-202ENST00000353411 DNAH11Q96DT5 4516 aa1.96□□□□□ -2.1
SKP1-202ENST00000353411 FAT2Q9NYQ8 4349 aa1.96□□□□□ -2.1
SKP1-202ENST00000353411 KRTAP10-7P60409 375 aaPredicted RBP1.96□□□□□ -2.1
SKP1-202ENST00000353411 KRTAP10-5P60370 271 aa1.94□□□□□ -2.1
SKP1-202ENST00000353411 DNAH17Q9UFH2 4485 aa1.94□□□□□ -2.1
SKP1-202ENST00000353411 EPPK1P58107 5090 aaKnown RBP1.93□□□□□ -2.1
SKP1-202ENST00000353411 LCE3CQ5T5A8 94 aa1.93□□□□□ -2.1
SKP1-202ENST00000353411 CRCT1Q9UGL9 99 aa1.92□□□□□ -2.1
SKP1-202ENST00000353411 PKHD1L1Q86WI1 4243 aa1.92□□□□□ -2.1
SKP1-202ENST00000353411 SPRR2GQ9BYE4 73 aa1.92□□□□□ -2.1
SKP1-202ENST00000353411 FAT3Q8TDW7 4589 aa1.92□□□□□ -2.1
SKP1-202ENST00000353411 RYR1P21817 5038 aa1.91□□□□□ -2.1
SKP1-202ENST00000353411 DNAH9Q9NYC9 4486 aa1.9□□□□□ -2.11
SKP1-202ENST00000353411 HYDINQ4G0P3 5121 aa1.89□□□□□ -2.11
SKP1-202ENST00000353411 VPS13DQ5THJ4 4388 aa1.88□□□□□ -2.11
SKP1-202ENST00000353411 MT1HP80294 61 aa1.87□□□□□ -2.11
SKP1-202ENST00000353411 HSPG2P98160 4391 aa1.86□□□□□ -2.11
SKP1-202ENST00000353411 PLECQ15149 4684 aaKnown RBP1.86□□□□□ -2.11
SKP1-202ENST00000353411 KRTAP12-4P60329 112 aa1.83□□□□□ -2.12
SKP1-202ENST00000353411 SACSQ9NZJ4 4579 aa1.82□□□□□ -2.12
SKP1-202ENST00000353411 KRTAP19-5Q3LI72 72 aa1.82□□□□□ -2.12
SKP1-202ENST00000353411 DNAH5Q8TE73 4624 aa1.8□□□□□ -2.12
SKP1-202ENST00000353411 HERC2O95714 4834 aa1.79□□□□□ -2.12
SKP1-202ENST00000353411 MT2AP02795 61 aa1.79□□□□□ -2.12
SKP1-202ENST00000353411 STARD9Q9P2P6 4700 aa1.78□□□□□ -2.12
SKP1-202ENST00000353411 KIAA1109Q2LD37 5005 aa1.77□□□□□ -2.13
SKP1-202ENST00000353411 APOBP04114 4563 aaKnown RBP1.77□□□□□ -2.13
SKP1-202ENST00000353411 LCE5AQ5TCM9 118 aa1.77□□□□□ -2.13
SKP1-202ENST00000353411 KRTAP4-1Q9BYQ7 146 aa1.77□□□□□ -2.13
SKP1-202ENST00000353411 PKD1P98161 4303 aa1.75□□□□□ -2.13
SKP1-202ENST00000353411 UBR4Q5T4S7 5183 aa1.75□□□□□ -2.13
SKP1-202ENST00000353411 KRTAP9-6A0A140TA67 174 aa1.75□□□□□ -2.13
SKP1-202ENST00000353411 LRP2P98164 4655 aa1.74□□□□□ -2.13
SKP1-202ENST00000353411 HMCN2Q8NDA2 5059 aa1.74□□□□□ -2.13
SKP1-202ENST00000353411 ABCA13Q86UQ4 5058 aa1.74□□□□□ -2.13
SKP1-202ENST00000353411 FAT1Q14517 4588 aa1.73□□□□□ -2.13
SKP1-202ENST00000353411 KRTAP19-8Q3LI54 63 aa1.73□□□□□ -2.13
SKP1-202ENST00000353411 KRTAP19-1Q8IUB9 90 aa1.73□□□□□ -2.13
SKP1-202ENST00000353411 KRTAP17-1Q9BYP8 105 aa1.72□□□□□ -2.13
SKP1-202ENST00000353411 TNXBP22105 4242 aa1.71□□□□□ -2.14
SKP1-202ENST00000353411 MT1XP80297 61 aa1.7□□□□□ -2.14
SKP1-202ENST00000353411 SPRR2FQ96RM1 72 aa1.7□□□□□ -2.14
SKP1-202ENST00000353411 KRTAP9-2Q9BYQ4 174 aa1.7□□□□□ -2.14
SKP1-202ENST00000353411 SPRR2EP22531 72 aa1.7□□□□□ -2.14
SKP1-202ENST00000353411 SPRR2BP35325 72 aa1.7□□□□□ -2.14
SKP1-202ENST00000353411 SPRR2AP35326 72 aa1.7□□□□□ -2.14
SKP1-202ENST00000353411 MT1FP04733 61 aa1.69□□□□□ -2.14
SKP1-202ENST00000353411 SPRR2DP22532 72 aa1.69□□□□□ -2.14
SKP1-202ENST00000353411 KRTAP9-4Q9BYQ2 154 aa1.68□□□□□ -2.14
SKP1-202ENST00000353411 LCE3EQ5T5B0 92 aa1.67□□□□□ -2.14
SKP1-202ENST00000353411 LCE3DQ9BYE3 92 aa1.67□□□□□ -2.14
SKP1-202ENST00000353411 LRP1Q07954 4544 aaKnown RBP1.67□□□□□ -2.14
SKP1-202ENST00000353411 FAT4Q6V0I7 4981 aa1.67□□□□□ -2.14
SKP1-202ENST00000353411 LCE4AQ5TA78 99 aa1.67□□□□□ -2.14
SKP1-202ENST00000353411 MUC17Q685J3 4493 aa1.67□□□□□ -2.14
SKP1-202ENST00000353411 KRTAP2-3P0C7H8 128 aa1.66□□□□□ -2.14
SKP1-202ENST00000353411 KRTAP2-4Q9BYR9 128 aa1.66□□□□□ -2.14
SKP1-202ENST00000353411 KRTAP2-1Q9BYU5 128 aa1.66□□□□□ -2.14
SKP1-202ENST00000353411 KRTAP19-6Q3LI70 58 aa1.66□□□□□ -2.14
SKP1-202ENST00000353411 LCE1FQ5T754 118 aa1.66□□□□□ -2.14
SKP1-202ENST00000353411 LCE3BQ5TA77 95 aa1.64□□□□□ -2.15
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms