RNA–Protein interactions for RNA: ENST00000342245.8

SMPD1-201, Transcript of sphingomyelin phosphodiesterase 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SMPD1, Length 2,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD1-201ENST00000342245 KRTAP3-3Q9BYR6 98 aa9.5□□□□□ -0.89
SMPD1-201ENST00000342245 VPS13BQ7Z7G8 4022 aa9.5□□□□□ -0.89
SMPD1-201ENST00000342245 XP32Q5T750 250 aa9.49□□□□□ -0.89
SMPD1-201ENST00000342245 KRTAP12-2P59991 146 aa9.45□□□□□ -0.9
SMPD1-201ENST00000342245 KRTAP12-1P59990 96 aa9.38□□□□□ -0.91
SMPD1-201ENST00000342245 PKHD1P08F94 4074 aa9.34□□□□□ -0.91
SMPD1-201ENST00000342245 SACSQ9NZJ4 4579 aa9.3□□□□□ -0.92
SMPD1-201ENST00000342245 KRTAP21-3Q3LHN1 58 aa9.28□□□□□ -0.92
SMPD1-201ENST00000342245 SMR3BP02814 79 aaPredicted RBP9.28□□□□□ -0.92
SMPD1-201ENST00000342245 DYNC1H1Q14204 4646 aaKnown RBP9.25□□□□□ -0.93
SMPD1-201ENST00000342245 M0QZ58 72 aa9.25□□□□□ -0.93
SMPD1-201ENST00000342245 PLAC4Q8WY50 150 aa9.22□□□□□ -0.93
SMPD1-201ENST00000342245 FAT1Q14517 4588 aa9.17□□□□□ -0.94
SMPD1-201ENST00000342245 DMBT1Q9UGM3 2413 aaPredicted RBP9.14□□□□□ -0.95
SMPD1-201ENST00000342245 APOBP04114 4563 aaKnown RBP9.12□□□□□ -0.95
SMPD1-201ENST00000342245 PKHD1L1Q86WI1 4243 aa9.12□□□□□ -0.95
SMPD1-201ENST00000342245 A0A1B0GVY2 172 aa9.09□□□□□ -0.95
SMPD1-201ENST00000342245 KRTAP10-4P60372 401 aaPredicted RBP9.08□□□□□ -0.96
SMPD1-201ENST00000342245 KRTAP10-8P60410 259 aa9.03□□□□□ -0.96
SMPD1-201ENST00000342245 RYR2Q92736 4967 aa8.98□□□□□ -0.97
SMPD1-201ENST00000342245 SEC61BP60468 96 aaKnown RBP8.94□□□□□ -0.98
SMPD1-201ENST00000342245 PP632Q6XCG6 107 aa8.9□□□□□ -0.98
SMPD1-201ENST00000342245 KMT2CQ8NEZ4 4911 aaKnown RBP8.88□□□□□ -0.99
SMPD1-201ENST00000342245 LRP1Q07954 4544 aaKnown RBP8.83□□□□□ -1
SMPD1-201ENST00000342245 FAT3Q8TDW7 4589 aa8.81□□□□□ -1
SMPD1-201ENST00000342245 TNXBP22105 4242 aa8.79□□□□□ -1
SMPD1-201ENST00000342245 R4GN34 69 aa8.75□□□□□ -1.01
SMPD1-201ENST00000342245 HSPG2P98160 4391 aa8.73□□□□□ -1.01
SMPD1-201ENST00000342245 Q5VSD8 79 aa8.71□□□□□ -1.02
SMPD1-201ENST00000342245 MYCBP2O75592 4640 aa8.7□□□□□ -1.02
SMPD1-201ENST00000342245 KRTAP17-1Q9BYP8 105 aa8.66□□□□□ -1.02
SMPD1-201ENST00000342245 RYR3Q15413 4870 aa8.61□□□□□ -1.03
SMPD1-201ENST00000342245 RYR1P21817 5038 aa8.6□□□□□ -1.03
SMPD1-201ENST00000342245 CAMK2N1Q7Z7J9 78 aa8.59□□□□□ -1.03
SMPD1-201ENST00000342245 SPRR5A0A1B0GTR4 108 aa8.51□□□□□ -1.05
SMPD1-201ENST00000342245 KIAA1109Q2LD37 5005 aa8.48□□□□□ -1.05
SMPD1-201ENST00000342245 MT1HL1P0DM35 61 aa8.47□□□□□ -1.05
SMPD1-201ENST00000342245 KRTAP23-1A1A580 65 aa8.45□□□□□ -1.06
SMPD1-201ENST00000342245 PRO2289Q9P1D8 64 aa8.45□□□□□ -1.06
SMPD1-201ENST00000342245 LPAP08519 4548 aa8.39□□□□□ -1.07
SMPD1-201ENST00000342245 LRP2P98164 4655 aa8.31□□□□□ -1.08
SMPD1-201ENST00000342245 EPPK1P58107 5090 aaKnown RBP8.31□□□□□ -1.08
SMPD1-201ENST00000342245 LORP23490 312 aaPredicted RBP8.3□□□□□ -1.08
SMPD1-201ENST00000342245 TNP1P09430 55 aa8.25□□□□□ -1.09
SMPD1-201ENST00000342245 INE1O15225 51 aa8.23□□□□□ -1.09
SMPD1-201ENST00000342245 ABCA13Q86UQ4 5058 aa8.19□□□□□ -1.1
SMPD1-201ENST00000342245 KRTAP4-5Q9BYR2 181 aa8.19□□□□□ -1.1
SMPD1-201ENST00000342245 MUC17Q685J3 4493 aa7.95□□□□□ -1.14
SMPD1-201ENST00000342245 KRTAP4-1Q9BYQ7 146 aa7.93□□□□□ -1.14
SMPD1-201ENST00000342245 J3QL48 77 aa7.86□□□□□ -1.15
SMPD1-201ENST00000342245 HERC2O95714 4834 aa7.82□□□□□ -1.16
SMPD1-201ENST00000342245 BIRC6Q9NR09 4857 aa7.8□□□□□ -1.16
SMPD1-201ENST00000342245 KRTAP19-2Q3LHN2 52 aa7.74□□□□□ -1.17
SMPD1-201ENST00000342245 FLGP20930 4061 aaPredicted RBP7.69□□□□□ -1.18
SMPD1-201ENST00000342245 MUC2Q02817 5179 aa7.64□□□□□ -1.19
SMPD1-201ENST00000342245 LCE3AQ5TA76 89 aa7.58□□□□□ -1.2
SMPD1-201ENST00000342245 PCLOQ9Y6V0 5065 aa7.57□□□□□ -1.2
SMPD1-201ENST00000342245 HERC1Q15751 4861 aa7.51□□□□□ -1.21
SMPD1-201ENST00000342245 KRTAP8-1Q8IUC2 63 aa7.51□□□□□ -1.21
SMPD1-201ENST00000342245 SPRR2GQ9BYE4 73 aa7.44□□□□□ -1.22
SMPD1-201ENST00000342245 HMCN2Q8NDA2 5059 aa7.4□□□□□ -1.22
SMPD1-201ENST00000342245 LCE2CQ5TA81 110 aa7.29□□□□□ -1.24
SMPD1-201ENST00000342245 FAT4Q6V0I7 4981 aa7.29□□□□□ -1.24
SMPD1-201ENST00000342245 KRTAP10-12P60413 245 aa7.25□□□□□ -1.25
SMPD1-201ENST00000342245 KRTAP19-1Q8IUB9 90 aa7.25□□□□□ -1.25
SMPD1-201ENST00000342245 KRTAP12-3P60328 96 aa7.25□□□□□ -1.25
SMPD1-201ENST00000342245 KRTAP10-10P60014 251 aa7.18□□□□□ -1.26
SMPD1-201ENST00000342245 M0R2T5 61 aa7.12□□□□□ -1.27
SMPD1-201ENST00000342245 RNF213Q63HN8 5207 aa7.11□□□□□ -1.27
SMPD1-201ENST00000342245 MT1HP80294 61 aa7.09□□□□□ -1.27
SMPD1-201ENST00000342245 UBR4Q5T4S7 5183 aa7.07□□□□□ -1.28
SMPD1-201ENST00000342245 KRTAP10-5P60370 271 aa7.04□□□□□ -1.28
SMPD1-201ENST00000342245 MT1FP04733 61 aa7□□□□□ -1.29
SMPD1-201ENST00000342245 KRTAP19-8Q3LI54 63 aa6.98□□□□□ -1.29
SMPD1-201ENST00000342245 MT2AP02795 61 aa6.98□□□□□ -1.29
SMPD1-201ENST00000342245 KRTAP9-8Q9BYQ0 159 aa6.93□□□□□ -1.3
SMPD1-201ENST00000342245 MT1XP80297 61 aa6.91□□□□□ -1.3
SMPD1-201ENST00000342245 LCE3CQ5T5A8 94 aa6.88□□□□□ -1.31
SMPD1-201ENST00000342245 KRTAP2-3P0C7H8 128 aa6.77□□□□□ -1.33
SMPD1-201ENST00000342245 KRTAP2-4Q9BYR9 128 aa6.77□□□□□ -1.33
SMPD1-201ENST00000342245 KRTAP2-1Q9BYU5 128 aa6.77□□□□□ -1.33
SMPD1-201ENST00000342245 MT1BP07438 61 aa6.76□□□□□ -1.33
SMPD1-201ENST00000342245 KRTAP10-7P60409 375 aaPredicted RBP6.73□□□□□ -1.33
SMPD1-201ENST00000342245 KRTAP19-5Q3LI72 72 aa6.62□□□□□ -1.35
SMPD1-201ENST00000342245 KRTAP9-3Q9BYQ3 159 aa6.62□□□□□ -1.35
SMPD1-201ENST00000342245 KRTAP9-6A8MVA2 160 aa6.57□□□□□ -1.36
SMPD1-201ENST00000342245 KRTAP19-4Q3LI73 84 aa6.54□□□□□ -1.36
SMPD1-201ENST00000342245 LCE2BO14633 110 aa6.4□□□□□ -1.38
SMPD1-201ENST00000342245 USH2AO75445 5202 aa6.32□□□□□ -1.4
SMPD1-201ENST00000342245 LCE2AQ5TA79 106 aaPredicted RBP6.25□□□□□ -1.41
SMPD1-201ENST00000342245 KMT2DO14686 5537 aa6.23□□□□□ -1.41
SMPD1-201ENST00000342245 KRTAP4-8A0A0G2JLE6 195 aa6.16□□□□□ -1.42
SMPD1-201ENST00000342245 KRTAP4-8Q9BYQ9 185 aa6.16□□□□□ -1.42
SMPD1-201ENST00000342245 KRTAP19-7Q3SYF9 63 aa6.14□□□□□ -1.43
SMPD1-201ENST00000342245 KRTAP4-7Q9BYR0 210 aa6.13□□□□□ -1.43
SMPD1-201ENST00000342245 KRTAP12-4P60329 112 aa6.1□□□□□ -1.43
SMPD1-201ENST00000342245 MT1LQ93083 61 aa6.05□□□□□ -1.44
SMPD1-201ENST00000342245 MT1EP04732 61 aa5.94□□□□□ -1.46
SMPD1-201ENST00000342245 FSIP2Q5CZC0 6907 aa5.87□□□□□ -1.47
SMPD1-201ENST00000342245 SSPOA2VEC9 5147 aa5.87□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 57.7 ms