RNA–Protein interactions for RNA: ENST00000334504.11

COL4A6-201, Transcript of collagen type IV alpha 6 chain, humanhuman

APPRIS P1 TSL 5 BASIC

Gene COL4A6, Length 6,700 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-201ENST00000334504 COL7A1Q02388 2944 aa4.18□□□□□ -1.74
COL4A6-201ENST00000334504 ZNF469Q96JG9 3925 aaPredicted RBP4.13□□□□□ -1.75
COL4A6-201ENST00000334504 MEGF8Q7Z7M0 2845 aa4.12□□□□□ -1.75
COL4A6-201ENST00000334504 KRTAP8-1Q8IUC2 63 aa4.12□□□□□ -1.75
COL4A6-201ENST00000334504 CSMD3Q7Z407 3707 aa4.12□□□□□ -1.75
COL4A6-201ENST00000334504 KRTAP10-4P60372 401 aaPredicted RBP3.97□□□□□ -1.77
COL4A6-201ENST00000334504 SPRR2FQ96RM1 72 aa3.9□□□□□ -1.79
COL4A6-201ENST00000334504 DNAH10Q8IVF4 4471 aa3.89□□□□□ -1.79
COL4A6-201ENST00000334504 DNAH3Q8TD57 4116 aa3.88□□□□□ -1.79
COL4A6-201ENST00000334504 FRAS1Q86XX4 4008 aa3.88□□□□□ -1.79
COL4A6-201ENST00000334504 DNAH9Q9NYC9 4486 aa3.87□□□□□ -1.79
COL4A6-201ENST00000334504 ANK2Q01484 3957 aa3.86□□□□□ -1.79
COL4A6-201ENST00000334504 CMYA5Q8N3K9 4069 aa3.85□□□□□ -1.79
COL4A6-201ENST00000334504 DNAH1Q9P2D7 4330 aa3.83□□□□□ -1.8
COL4A6-201ENST00000334504 KRTAP10-7P60409 375 aaPredicted RBP3.8□□□□□ -1.8
COL4A6-201ENST00000334504 SPRR2EP22531 72 aa3.76□□□□□ -1.81
COL4A6-201ENST00000334504 SPRR2BP35325 72 aa3.76□□□□□ -1.81
COL4A6-201ENST00000334504 SPRR2AP35326 72 aa3.76□□□□□ -1.81
COL4A6-201ENST00000334504 LCE3CQ5T5A8 94 aa3.76□□□□□ -1.81
COL4A6-201ENST00000334504 LYSTQ99698 3801 aa3.76□□□□□ -1.81
COL4A6-201ENST00000334504 KRTAP19-5Q3LI72 72 aa3.75□□□□□ -1.81
COL4A6-201ENST00000334504 MT1HP80294 61 aa3.74□□□□□ -1.81
COL4A6-201ENST00000334504 DNAH2Q9P225 4427 aa3.73□□□□□ -1.81
COL4A6-201ENST00000334504 KMT2AQ03164 3969 aa3.72□□□□□ -1.81
COL4A6-201ENST00000334504 KRTAP4-1Q9BYQ7 146 aa3.72□□□□□ -1.81
COL4A6-201ENST00000334504 DNAH7Q8WXX0 4024 aa3.71□□□□□ -1.81
COL4A6-201ENST00000334504 FAT2Q9NYQ8 4349 aa3.67□□□□□ -1.82
COL4A6-201ENST00000334504 SPRR2GQ9BYE4 73 aa3.67□□□□□ -1.82
COL4A6-201ENST00000334504 PLECQ15149 4684 aaKnown RBP3.66□□□□□ -1.82
COL4A6-201ENST00000334504 DNAH5Q8TE73 4624 aa3.65□□□□□ -1.83
COL4A6-201ENST00000334504 DNAH11Q96DT5 4516 aa3.65□□□□□ -1.83
COL4A6-201ENST00000334504 MT2AP02795 61 aa3.63□□□□□ -1.83
COL4A6-201ENST00000334504 PRKDCP78527 4128 aaKnown RBP3.63□□□□□ -1.83
COL4A6-201ENST00000334504 VPS13BQ7Z7G8 4022 aa3.62□□□□□ -1.83
COL4A6-201ENST00000334504 SPRR2DP22532 72 aa3.62□□□□□ -1.83
COL4A6-201ENST00000334504 DNAH8Q96JB1 4490 aa3.61□□□□□ -1.83
COL4A6-201ENST00000334504 DNAH17Q9UFH2 4485 aa3.6□□□□□ -1.83
COL4A6-201ENST00000334504 VPS13DQ5THJ4 4388 aa3.6□□□□□ -1.83
COL4A6-201ENST00000334504 DNAH6Q9C0G6 4158 aa3.6□□□□□ -1.83
COL4A6-201ENST00000334504 STARD9Q9P2P6 4700 aa3.58□□□□□ -1.84
COL4A6-201ENST00000334504 HECTD4Q9Y4D8 3996 aa3.57□□□□□ -1.84
COL4A6-201ENST00000334504 DYNC2H1Q8NCM8 4307 aaKnown RBP3.57□□□□□ -1.84
COL4A6-201ENST00000334504 MT1FP04733 61 aa3.56□□□□□ -1.84
COL4A6-201ENST00000334504 KRTAP12-4P60329 112 aa3.55□□□□□ -1.84
COL4A6-201ENST00000334504 LCE3BQ5TA77 95 aa3.55□□□□□ -1.84
COL4A6-201ENST00000334504 DNHD1Q96M86 4753 aa3.53□□□□□ -1.84
COL4A6-201ENST00000334504 KRTAP19-4Q3LI73 84 aa3.51□□□□□ -1.85
COL4A6-201ENST00000334504 SPRR5A0A1B0GTR4 108 aa3.49□□□□□ -1.85
COL4A6-201ENST00000334504 LCE2BO14633 110 aa3.49□□□□□ -1.85
COL4A6-201ENST00000334504 LRP1BQ9NZR2 4599 aa3.46□□□□□ -1.86
COL4A6-201ENST00000334504 FAT1Q14517 4588 aa3.45□□□□□ -1.86
COL4A6-201ENST00000334504 MT1GP13640 62 aa3.43□□□□□ -1.86
COL4A6-201ENST00000334504 DYNC1H1Q14204 4646 aaKnown RBP3.41□□□□□ -1.86
COL4A6-201ENST00000334504 RYR1P21817 5038 aa3.41□□□□□ -1.86
COL4A6-201ENST00000334504 SACSQ9NZJ4 4579 aa3.39□□□□□ -1.87
COL4A6-201ENST00000334504 LCE3DQ9BYE3 92 aa3.36□□□□□ -1.87
COL4A6-201ENST00000334504 LCE2CQ5TA81 110 aa3.35□□□□□ -1.87
COL4A6-201ENST00000334504 MT4P47944 62 aa3.34□□□□□ -1.87
COL4A6-201ENST00000334504 MT1XP80297 61 aa3.34□□□□□ -1.87
COL4A6-201ENST00000334504 KRTAP19-8Q3LI54 63 aa3.33□□□□□ -1.88
COL4A6-201ENST00000334504 LCE2DQ5TA82 110 aaPredicted RBP3.33□□□□□ -1.88
COL4A6-201ENST00000334504 KRTAP19-1Q8IUB9 90 aa3.33□□□□□ -1.88
COL4A6-201ENST00000334504 LCE3EQ5T5B0 92 aa3.31□□□□□ -1.88
COL4A6-201ENST00000334504 KRTAP17-1Q9BYP8 105 aa3.3□□□□□ -1.88
COL4A6-201ENST00000334504 KRTAP4-8A0A0G2JLE6 195 aa3.25□□□□□ -1.89
COL4A6-201ENST00000334504 KRTAP4-8Q9BYQ9 185 aa3.25□□□□□ -1.89
COL4A6-201ENST00000334504 APOBP04114 4563 aaKnown RBP3.24□□□□□ -1.89
COL4A6-201ENST00000334504 PKHD1L1Q86WI1 4243 aa3.24□□□□□ -1.89
COL4A6-201ENST00000334504 FAT3Q8TDW7 4589 aa3.23□□□□□ -1.89
COL4A6-201ENST00000334504 MT1BP07438 61 aa3.22□□□□□ -1.89
COL4A6-201ENST00000334504 RYR3Q15413 4870 aa3.22□□□□□ -1.89
COL4A6-201ENST00000334504 PKD1P98161 4303 aa3.22□□□□□ -1.89
COL4A6-201ENST00000334504 HSPG2P98160 4391 aa3.21□□□□□ -1.9
COL4A6-201ENST00000334504 PKHD1P08F94 4074 aa3.2□□□□□ -1.9
COL4A6-201ENST00000334504 LPAP08519 4548 aa3.2□□□□□ -1.9
COL4A6-201ENST00000334504 PRM1P04553 51 aa3.19□□□□□ -1.9
COL4A6-201ENST00000334504 LRP1Q07954 4544 aaKnown RBP3.19□□□□□ -1.9
COL4A6-201ENST00000334504 TNXBP22105 4242 aa3.17□□□□□ -1.9
COL4A6-201ENST00000334504 KRTAP9-8Q9BYQ0 159 aa3.17□□□□□ -1.9
COL4A6-201ENST00000334504 KRTAP4-7Q9BYR0 210 aa3.16□□□□□ -1.9
COL4A6-201ENST00000334504 LCE1BQ5T7P3 118 aa3.16□□□□□ -1.9
COL4A6-201ENST00000334504 KRTAP9-2Q9BYQ4 174 aa3.12□□□□□ -1.91
COL4A6-201ENST00000334504 MYCBP2O75592 4640 aa3.12□□□□□ -1.91
COL4A6-201ENST00000334504 BIRC6Q9NR09 4857 aa3.11□□□□□ -1.91
COL4A6-201ENST00000334504 KRTAP9-3Q9BYQ3 159 aa3.11□□□□□ -1.91
COL4A6-201ENST00000334504 LCE1DQ5T752 114 aa3.1□□□□□ -1.91
COL4A6-201ENST00000334504 KIAA1109Q2LD37 5005 aa3.08□□□□□ -1.92
COL4A6-201ENST00000334504 MT1LQ93083 61 aa3.07□□□□□ -1.92
COL4A6-201ENST00000334504 HYDINQ4G0P3 5121 aa3.07□□□□□ -1.92
COL4A6-201ENST00000334504 MUC17Q685J3 4493 aa3.07□□□□□ -1.92
COL4A6-201ENST00000334504 KRTAP19-3Q7Z4W3 81 aa3.05□□□□□ -1.92
COL4A6-201ENST00000334504 HERC2O95714 4834 aa3.02□□□□□ -1.93
COL4A6-201ENST00000334504 KRTAP9-6A0A140TA67 174 aa3.01□□□□□ -1.93
COL4A6-201ENST00000334504 MT1EP04732 61 aa3.01□□□□□ -1.93
COL4A6-201ENST00000334504 LCE5AQ5TCM9 118 aa3□□□□□ -1.93
COL4A6-201ENST00000334504 RYR2Q92736 4967 aa3□□□□□ -1.93
COL4A6-201ENST00000334504 HERC1Q15751 4861 aa3□□□□□ -1.93
COL4A6-201ENST00000334504 LOC100996750A0A140TA64 210 aa3□□□□□ -1.93
COL4A6-201ENST00000334504 KRTAP20-1Q3LI63 56 aa2.98□□□□□ -1.93
COL4A6-201ENST00000334504 FLGP20930 4061 aaPredicted RBP2.97□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 90.5 ms