RNA–Protein interactions for RNA: ENST00000334258.9

SYNE3-201, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene SYNE3, Length 3,275 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-201ENST00000334258 C20orf166-AS1Q96NR2 134 aa7.41□□□□□ -1.22
SYNE3-201ENST00000334258 KRTAP3-1Q9BYR8 98 aa7.39□□□□□ -1.23
SYNE3-201ENST00000334258 MYCBP2O75592 4640 aa7.39□□□□□ -1.23
SYNE3-201ENST00000334258 EPPK1P58107 5090 aaKnown RBP7.38□□□□□ -1.23
SYNE3-201ENST00000334258 A0A1B0GVY2 172 aa7.38□□□□□ -1.23
SYNE3-201ENST00000334258 COX6B2Q6YFQ2 88 aa7.33□□□□□ -1.24
SYNE3-201ENST00000334258 HSPG2P98160 4391 aa7.29□□□□□ -1.24
SYNE3-201ENST00000334258 RPS29P62273 56 aaKnown RBP7.28□□□□□ -1.24
SYNE3-201ENST00000334258 A0A0D9SG42 100 aa7.27□□□□□ -1.25
SYNE3-201ENST00000334258 KRTAP17-1Q9BYP8 105 aa7.26□□□□□ -1.25
SYNE3-201ENST00000334258 FAT3Q8TDW7 4589 aa7.26□□□□□ -1.25
SYNE3-201ENST00000334258 PKHD1L1Q86WI1 4243 aa7.23□□□□□ -1.25
SYNE3-201ENST00000334258 C10orf95Q9H7T3 257 aa7.22□□□□□ -1.25
SYNE3-201ENST00000334258 RPL37P61927 97 aaKnown RBP7.21□□□□□ -1.26
SYNE3-201ENST00000334258 KRTAP10-4P60372 401 aaPredicted RBP7.2□□□□□ -1.26
SYNE3-201ENST00000334258 KRTAP15-1Q3LI76 137 aa7.2□□□□□ -1.26
SYNE3-201ENST00000334258 TPRXLQ17RH7 258 aa7.19□□□□□ -1.26
SYNE3-201ENST00000334258 Q5VSD8 79 aa7.19□□□□□ -1.26
SYNE3-201ENST00000334258 RYR1P21817 5038 aa7.19□□□□□ -1.26
SYNE3-201ENST00000334258 LUZP6Q538Z0 58 aa7.17□□□□□ -1.26
SYNE3-201ENST00000334258 KRTAP13-4Q3LI77 160 aa7.11□□□□□ -1.27
SYNE3-201ENST00000334258 KRTAP10-6P60371 365 aaPredicted RBP7.09□□□□□ -1.27
SYNE3-201ENST00000334258 TNXBP22105 4242 aa7.06□□□□□ -1.28
SYNE3-201ENST00000334258 KRTAP4-5Q9BYR2 181 aa7.05□□□□□ -1.28
SYNE3-201ENST00000334258 ABCA13Q86UQ4 5058 aa7.04□□□□□ -1.28
SYNE3-201ENST00000334258 KRTAP3-3Q9BYR6 98 aa7.03□□□□□ -1.28
SYNE3-201ENST00000334258 S4R3F8 94 aa7.02□□□□□ -1.29
SYNE3-201ENST00000334258 KRTAP3-2Q9BYR7 98 aa7□□□□□ -1.29
SYNE3-201ENST00000334258 LPAP08519 4548 aa6.99□□□□□ -1.29
SYNE3-201ENST00000334258 LRP2P98164 4655 aa6.95□□□□□ -1.3
SYNE3-201ENST00000334258 KRTAP10-8P60410 259 aa6.95□□□□□ -1.3
SYNE3-201ENST00000334258 KRTAP12-2P59991 146 aa6.93□□□□□ -1.3
SYNE3-201ENST00000334258 HERC2O95714 4834 aa6.9□□□□□ -1.3
SYNE3-201ENST00000334258 MT1HL1P0DM35 61 aa6.85□□□□□ -1.31
SYNE3-201ENST00000334258 XP32Q5T750 250 aa6.84□□□□□ -1.31
SYNE3-201ENST00000334258 KRTAP12-1P59990 96 aa6.82□□□□□ -1.32
SYNE3-201ENST00000334258 MUC2Q02817 5179 aa6.81□□□□□ -1.32
SYNE3-201ENST00000334258 HERC1Q15751 4861 aa6.78□□□□□ -1.32
SYNE3-201ENST00000334258 M0QZ58 72 aa6.72□□□□□ -1.33
SYNE3-201ENST00000334258 PCLOQ9Y6V0 5065 aa6.72□□□□□ -1.33
SYNE3-201ENST00000334258 J3QL48 77 aa6.71□□□□□ -1.34
SYNE3-201ENST00000334258 SEC61BP60468 96 aaKnown RBP6.67□□□□□ -1.34
SYNE3-201ENST00000334258 BIRC6Q9NR09 4857 aa6.66□□□□□ -1.34
SYNE3-201ENST00000334258 R4GN34 69 aa6.61□□□□□ -1.35
SYNE3-201ENST00000334258 PLAC4Q8WY50 150 aa6.57□□□□□ -1.36
SYNE3-201ENST00000334258 RNF213Q63HN8 5207 aa6.52□□□□□ -1.37
SYNE3-201ENST00000334258 FAT4Q6V0I7 4981 aa6.46□□□□□ -1.37
SYNE3-201ENST00000334258 UBR4Q5T4S7 5183 aa6.44□□□□□ -1.38
SYNE3-201ENST00000334258 KRTAP4-1Q9BYQ7 146 aa6.41□□□□□ -1.38
SYNE3-201ENST00000334258 LORP23490 312 aaPredicted RBP6.38□□□□□ -1.39
SYNE3-201ENST00000334258 CAMK2N1Q7Z7J9 78 aa6.37□□□□□ -1.39
SYNE3-201ENST00000334258 HMCN2Q8NDA2 5059 aa6.35□□□□□ -1.39
SYNE3-201ENST00000334258 MUC17Q685J3 4493 aa6.34□□□□□ -1.39
SYNE3-201ENST00000334258 PP632Q6XCG6 107 aa6.26□□□□□ -1.41
SYNE3-201ENST00000334258 TNP1P09430 55 aa6.08□□□□□ -1.44
SYNE3-201ENST00000334258 PRO2289Q9P1D8 64 aa6.06□□□□□ -1.44
SYNE3-201ENST00000334258 KRTAP19-2Q3LHN2 52 aa6.03□□□□□ -1.44
SYNE3-201ENST00000334258 FLGP20930 4061 aaPredicted RBP6□□□□□ -1.45
SYNE3-201ENST00000334258 M0R2T5 61 aa5.99□□□□□ -1.45
SYNE3-201ENST00000334258 LCE2CQ5TA81 110 aa5.88□□□□□ -1.47
SYNE3-201ENST00000334258 KRTAP23-1A1A580 65 aa5.85□□□□□ -1.47
SYNE3-201ENST00000334258 SPRR5A0A1B0GTR4 108 aa5.83□□□□□ -1.48
SYNE3-201ENST00000334258 MT1HP80294 61 aa5.78□□□□□ -1.48
SYNE3-201ENST00000334258 USH2AO75445 5202 aa5.74□□□□□ -1.49
SYNE3-201ENST00000334258 INE1O15225 51 aa5.72□□□□□ -1.49
SYNE3-201ENST00000334258 KRTAP10-10P60014 251 aa5.7□□□□□ -1.5
SYNE3-201ENST00000334258 FSIP2Q5CZC0 6907 aa5.69□□□□□ -1.5
SYNE3-201ENST00000334258 LCE3AQ5TA76 89 aa5.68□□□□□ -1.5
SYNE3-201ENST00000334258 MT1FP04733 61 aa5.63□□□□□ -1.51
SYNE3-201ENST00000334258 SPRR2GQ9BYE4 73 aa5.61□□□□□ -1.51
SYNE3-201ENST00000334258 MT2AP02795 61 aa5.6□□□□□ -1.51
SYNE3-201ENST00000334258 KRTAP19-1Q8IUB9 90 aa5.6□□□□□ -1.51
SYNE3-201ENST00000334258 KRTAP9-8Q9BYQ0 159 aa5.57□□□□□ -1.52
SYNE3-201ENST00000334258 KRTAP8-1Q8IUC2 63 aa5.45□□□□□ -1.54
SYNE3-201ENST00000334258 KMT2DO14686 5537 aa5.41□□□□□ -1.54
SYNE3-201ENST00000334258 KRTAP12-3P60328 96 aa5.41□□□□□ -1.54
SYNE3-201ENST00000334258 KRTAP10-12P60413 245 aa5.36□□□□□ -1.55
SYNE3-201ENST00000334258 KRTAP9-3Q9BYQ3 159 aa5.32□□□□□ -1.56
SYNE3-201ENST00000334258 KRTAP10-5P60370 271 aa5.31□□□□□ -1.56
SYNE3-201ENST00000334258 MT1BP07438 61 aa5.3□□□□□ -1.56
SYNE3-201ENST00000334258 MT1XP80297 61 aa5.29□□□□□ -1.56
SYNE3-201ENST00000334258 LCE2AQ5TA79 106 aaPredicted RBP5.29□□□□□ -1.56
SYNE3-201ENST00000334258 LCE2BO14633 110 aa5.28□□□□□ -1.56
SYNE3-201ENST00000334258 KRTAP19-8Q3LI54 63 aa5.28□□□□□ -1.56
SYNE3-201ENST00000334258 KRTAP10-7P60409 375 aaPredicted RBP5.23□□□□□ -1.57
SYNE3-201ENST00000334258 SSPOA2VEC9 5147 aa5.15□□□□□ -1.59
SYNE3-201ENST00000334258 KRTAP19-5Q3LI72 72 aa5.07□□□□□ -1.6
SYNE3-201ENST00000334258 LCE3CQ5T5A8 94 aa5.06□□□□□ -1.6
SYNE3-201ENST00000334258 KRTAP4-8A0A0G2JLE6 195 aa5.03□□□□□ -1.6
SYNE3-201ENST00000334258 KRTAP4-8Q9BYQ9 185 aa5.03□□□□□ -1.6
SYNE3-201ENST00000334258 KRTAP9-6A8MVA2 160 aa4.9□□□□□ -1.63
SYNE3-201ENST00000334258 MUC12Q9UKN1 5478 aa4.86□□□□□ -1.63
SYNE3-201ENST00000334258 FCGBPQ9Y6R7 5405 aaPredicted RBP4.85□□□□□ -1.63
SYNE3-201ENST00000334258 KRTAP4-7Q9BYR0 210 aa4.83□□□□□ -1.64
SYNE3-201ENST00000334258 DSTQ03001 7570 aaKnown RBP4.81□□□□□ -1.64
SYNE3-201ENST00000334258 SYNE2Q8WXH0 6885 aaKnown RBP4.78□□□□□ -1.64
SYNE3-201ENST00000334258 MACF1Q9UPN3 7388 aaKnown RBP4.77□□□□□ -1.65
SYNE3-201ENST00000334258 KRTAP2-3P0C7H8 128 aa4.76□□□□□ -1.65
SYNE3-201ENST00000334258 KRTAP2-4Q9BYR9 128 aa4.76□□□□□ -1.65
SYNE3-201ENST00000334258 KRTAP2-1Q9BYU5 128 aa4.76□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 95.8 ms