RNA–Protein interactions for RNA: ENST00000320755.11

COL9A1-201, Transcript of collagen type IX alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL9A1, Length 3,059 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1-201ENST00000320755 KRTAP17-1Q9BYP8 105 aa9.03□□□□□ -0.96
COL9A1-201ENST00000320755 XP32Q5T750 250 aa9.01□□□□□ -0.97
COL9A1-201ENST00000320755 RPL37P61927 97 aaKnown RBP9.01□□□□□ -0.97
COL9A1-201ENST00000320755 CSAG1Q6PB30 78 aa9.01□□□□□ -0.97
COL9A1-201ENST00000320755 H3BS24 57 aa9□□□□□ -0.97
COL9A1-201ENST00000320755 RYR3Q15413 4870 aa9□□□□□ -0.97
COL9A1-201ENST00000320755 KIAA1109Q2LD37 5005 aa8.98□□□□□ -0.97
COL9A1-201ENST00000320755 RYR1P21817 5038 aa8.92□□□□□ -0.98
COL9A1-201ENST00000320755 KRTAP3-3Q9BYR6 98 aa8.91□□□□□ -0.98
COL9A1-201ENST00000320755 LINC01554Q52M75 96 aa8.87□□□□□ -0.99
COL9A1-201ENST00000320755 S4R3F8 94 aa8.87□□□□□ -0.99
COL9A1-201ENST00000320755 A0A0D9SG42 100 aa8.86□□□□□ -0.99
COL9A1-201ENST00000320755 MT1HL1P0DM35 61 aa8.86□□□□□ -0.99
COL9A1-201ENST00000320755 KRTAP10-6P60371 365 aaPredicted RBP8.83□□□□□ -1
COL9A1-201ENST00000320755 CRIPTQ9P021 101 aa8.83□□□□□ -1
COL9A1-201ENST00000320755 K7ERS5 55 aa8.82□□□□□ -1
COL9A1-201ENST00000320755 LPAP08519 4548 aa8.81□□□□□ -1
COL9A1-201ENST00000320755 KRTAP13-4Q3LI77 160 aa8.8□□□□□ -1
COL9A1-201ENST00000320755 LRP2P98164 4655 aa8.8□□□□□ -1
COL9A1-201ENST00000320755 KRTAP3-2Q9BYR7 98 aa8.77□□□□□ -1.01
COL9A1-201ENST00000320755 P0C880 135 aa8.76□□□□□ -1.01
COL9A1-201ENST00000320755 EPPK1P58107 5090 aaKnown RBP8.71□□□□□ -1.02
COL9A1-201ENST00000320755 KRTAP25-1Q3LHN0 102 aa8.68□□□□□ -1.02
COL9A1-201ENST00000320755 KRTAP4-5Q9BYR2 181 aa8.63□□□□□ -1.03
COL9A1-201ENST00000320755 ABCA13Q86UQ4 5058 aa8.61□□□□□ -1.03
COL9A1-201ENST00000320755 TPRXLQ17RH7 258 aa8.6□□□□□ -1.03
COL9A1-201ENST00000320755 ROMO1P60602 79 aa8.59□□□□□ -1.03
COL9A1-201ENST00000320755 SPINT4Q6UDR6 99 aa8.54□□□□□ -1.04
COL9A1-201ENST00000320755 KRTAP12-2P59991 146 aa8.51□□□□□ -1.05
COL9A1-201ENST00000320755 C10orf95Q9H7T3 257 aa8.44□□□□□ -1.06
COL9A1-201ENST00000320755 KRTAP12-1P59990 96 aa8.41□□□□□ -1.06
COL9A1-201ENST00000320755 J3QL48 77 aa8.37□□□□□ -1.07
COL9A1-201ENST00000320755 M0QZ58 72 aa8.34□□□□□ -1.07
COL9A1-201ENST00000320755 SEC61BP60468 96 aaKnown RBP8.33□□□□□ -1.08
COL9A1-201ENST00000320755 KRTAP4-1Q9BYQ7 146 aa8.3□□□□□ -1.08
COL9A1-201ENST00000320755 R4GN34 69 aa8.29□□□□□ -1.08
COL9A1-201ENST00000320755 HERC2O95714 4834 aa8.24□□□□□ -1.09
COL9A1-201ENST00000320755 MUC17Q685J3 4493 aa8.23□□□□□ -1.09
COL9A1-201ENST00000320755 LORP23490 312 aaPredicted RBP8.22□□□□□ -1.09
COL9A1-201ENST00000320755 MUC2Q02817 5179 aa8.2□□□□□ -1.1
COL9A1-201ENST00000320755 KRTAP19-2Q3LHN2 52 aa8.01□□□□□ -1.13
COL9A1-201ENST00000320755 HERC1Q15751 4861 aa7.93□□□□□ -1.14
COL9A1-201ENST00000320755 CAMK2N1Q7Z7J9 78 aa7.9□□□□□ -1.14
COL9A1-201ENST00000320755 KRTAP15-1Q3LI76 137 aa7.87□□□□□ -1.15
COL9A1-201ENST00000320755 A0A0A0MQY5 61 aa7.86□□□□□ -1.15
COL9A1-201ENST00000320755 BIRC6Q9NR09 4857 aa7.83□□□□□ -1.16
COL9A1-201ENST00000320755 FLGP20930 4061 aaPredicted RBP7.83□□□□□ -1.16
COL9A1-201ENST00000320755 NDUFAF8A1L188 74 aa7.8□□□□□ -1.16
COL9A1-201ENST00000320755 FAT4Q6V0I7 4981 aa7.79□□□□□ -1.16
COL9A1-201ENST00000320755 PCLOQ9Y6V0 5065 aa7.78□□□□□ -1.16
COL9A1-201ENST00000320755 HMCN2Q8NDA2 5059 aa7.7□□□□□ -1.18
COL9A1-201ENST00000320755 PLAC4Q8WY50 150 aa7.64□□□□□ -1.19
COL9A1-201ENST00000320755 M0R2T5 61 aa7.63□□□□□ -1.19
COL9A1-201ENST00000320755 RNF213Q63HN8 5207 aa7.62□□□□□ -1.19
COL9A1-201ENST00000320755 LCE2CQ5TA81 110 aa7.6□□□□□ -1.19
COL9A1-201ENST00000320755 PP632Q6XCG6 107 aa7.53□□□□□ -1.2
COL9A1-201ENST00000320755 UBR4Q5T4S7 5183 aa7.52□□□□□ -1.21
COL9A1-201ENST00000320755 TNP1P09430 55 aa7.51□□□□□ -1.21
COL9A1-201ENST00000320755 MT1HP80294 61 aa7.42□□□□□ -1.22
COL9A1-201ENST00000320755 KRTAP19-1Q8IUB9 90 aa7.42□□□□□ -1.22
COL9A1-201ENST00000320755 KRTAP10-10P60014 251 aa7.4□□□□□ -1.23
COL9A1-201ENST00000320755 SPRR2GQ9BYE4 73 aa7.39□□□□□ -1.23
COL9A1-201ENST00000320755 MT1FP04733 61 aa7.33□□□□□ -1.24
COL9A1-201ENST00000320755 MT2AP02795 61 aa7.3□□□□□ -1.24
COL9A1-201ENST00000320755 LUZP6Q538Z0 58 aa7.29□□□□□ -1.24
COL9A1-201ENST00000320755 KRTAP9-8Q9BYQ0 159 aa7.23□□□□□ -1.25
COL9A1-201ENST00000320755 KRTAP23-1A1A580 65 aa7.18□□□□□ -1.26
COL9A1-201ENST00000320755 LCE3AQ5TA76 89 aa7.15□□□□□ -1.26
COL9A1-201ENST00000320755 KRTAP19-8Q3LI54 63 aa7.04□□□□□ -1.28
COL9A1-201ENST00000320755 MT1BP07438 61 aa7.03□□□□□ -1.28
COL9A1-201ENST00000320755 KRTAP10-5P60370 271 aa6.99□□□□□ -1.29
COL9A1-201ENST00000320755 MT1XP80297 61 aa6.98□□□□□ -1.29
COL9A1-201ENST00000320755 SPRR5A0A1B0GTR4 108 aa6.96□□□□□ -1.3
COL9A1-201ENST00000320755 KRTAP9-3Q9BYQ3 159 aa6.92□□□□□ -1.3
COL9A1-201ENST00000320755 KRTAP10-12P60413 245 aa6.86□□□□□ -1.31
COL9A1-201ENST00000320755 KRTAP8-1Q8IUC2 63 aa6.86□□□□□ -1.31
COL9A1-201ENST00000320755 KRTAP10-7P60409 375 aaPredicted RBP6.85□□□□□ -1.31
COL9A1-201ENST00000320755 USH2AO75445 5202 aa6.81□□□□□ -1.32
COL9A1-201ENST00000320755 KRTAP12-3P60328 96 aa6.8□□□□□ -1.32
COL9A1-201ENST00000320755 PRO2289Q9P1D8 64 aa6.72□□□□□ -1.33
COL9A1-201ENST00000320755 LCE2BO14633 110 aa6.7□□□□□ -1.34
COL9A1-201ENST00000320755 KMT2DO14686 5537 aa6.66□□□□□ -1.34
COL9A1-201ENST00000320755 KRTAP19-5Q3LI72 72 aa6.55□□□□□ -1.36
COL9A1-201ENST00000320755 KRTAP4-8A0A0G2JLE6 195 aa6.51□□□□□ -1.37
COL9A1-201ENST00000320755 LCE2AQ5TA79 106 aaPredicted RBP6.51□□□□□ -1.37
COL9A1-201ENST00000320755 KRTAP4-8Q9BYQ9 185 aa6.51□□□□□ -1.37
COL9A1-201ENST00000320755 LCE3CQ5T5A8 94 aa6.36□□□□□ -1.39
COL9A1-201ENST00000320755 FSIP2Q5CZC0 6907 aa6.31□□□□□ -1.4
COL9A1-201ENST00000320755 KRTAP4-7Q9BYR0 210 aa6.23□□□□□ -1.41
COL9A1-201ENST00000320755 KRTAP19-7Q3SYF9 63 aa6.22□□□□□ -1.41
COL9A1-201ENST00000320755 KRTAP9-6A8MVA2 160 aa6.18□□□□□ -1.42
COL9A1-201ENST00000320755 SSPOA2VEC9 5147 aa6.15□□□□□ -1.42
COL9A1-201ENST00000320755 INE1O15225 51 aa6.09□□□□□ -1.44
COL9A1-201ENST00000320755 MT1EP04732 61 aa6.03□□□□□ -1.44
COL9A1-201ENST00000320755 MT1LQ93083 61 aa6.03□□□□□ -1.44
COL9A1-201ENST00000320755 KRTAP19-6Q3LI70 58 aa5.92□□□□□ -1.46
COL9A1-201ENST00000320755 FCGBPQ9Y6R7 5405 aaPredicted RBP5.89□□□□□ -1.47
COL9A1-201ENST00000320755 MUC12Q9UKN1 5478 aa5.87□□□□□ -1.47
COL9A1-201ENST00000320755 KRTAP4-3Q9BYR4 195 aa5.85□□□□□ -1.47
COL9A1-201ENST00000320755 KRTAP2-3P0C7H8 128 aa5.82□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 71.9 ms