RNA–Protein interactions for RNA: ENST00000316433.8

ZNF540-201, Transcript of zinc finger protein 540, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene ZNF540, Length 3,099 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-201ENST00000316433 KMT2AQ03164 3969 aa3.49□□□□□ -1.85
ZNF540-201ENST00000316433 COL6A5A8TX70 2615 aa3.48□□□□□ -1.85
ZNF540-201ENST00000316433 A0A0D9SG42 100 aa3.48□□□□□ -1.85
ZNF540-201ENST00000316433 KRTAP17-1Q9BYP8 105 aa3.47□□□□□ -1.85
ZNF540-201ENST00000316433 KRTAP10-4P60372 401 aaPredicted RBP3.46□□□□□ -1.86
ZNF540-201ENST00000316433 KRTAP13-4Q3LI77 160 aa3.45□□□□□ -1.86
ZNF540-201ENST00000316433 KRTAP3-1Q9BYR8 98 aa3.45□□□□□ -1.86
ZNF540-201ENST00000316433 CAMK2N1Q7Z7J9 78 aa3.45□□□□□ -1.86
ZNF540-201ENST00000316433 DYNC1H1Q14204 4646 aaKnown RBP3.45□□□□□ -1.86
ZNF540-201ENST00000316433 KRTAP10-1P60331 282 aa3.44□□□□□ -1.86
ZNF540-201ENST00000316433 XP32Q5T750 250 aa3.44□□□□□ -1.86
ZNF540-201ENST00000316433 S4R3F8 94 aa3.44□□□□□ -1.86
ZNF540-201ENST00000316433 STAB2Q8WWQ8 2551 aa3.44□□□□□ -1.86
ZNF540-201ENST00000316433 LRP1BQ9NZR2 4599 aa3.44□□□□□ -1.86
ZNF540-201ENST00000316433 KRTAP10-2P60368 255 aa3.43□□□□□ -1.86
ZNF540-201ENST00000316433 MGAM2Q2M2H8 2515 aa3.43□□□□□ -1.86
ZNF540-201ENST00000316433 PLAC4Q8WY50 150 aa3.42□□□□□ -1.86
ZNF540-201ENST00000316433 VPS13BQ7Z7G8 4022 aa3.42□□□□□ -1.86
ZNF540-201ENST00000316433 TGP01266 2768 aa3.41□□□□□ -1.86
ZNF540-201ENST00000316433 KRTAP10-6P60371 365 aaPredicted RBP3.41□□□□□ -1.86
ZNF540-201ENST00000316433 A0A1B0GVY2 172 aa3.4□□□□□ -1.87
ZNF540-201ENST00000316433 KRTAP12-2P59991 146 aa3.39□□□□□ -1.87
ZNF540-201ENST00000316433 KRTAP9-6A0A140TA67 174 aa3.38□□□□□ -1.87
ZNF540-201ENST00000316433 FAT1Q14517 4588 aa3.37□□□□□ -1.87
ZNF540-201ENST00000316433 DMBT1Q9UGM3 2413 aaPredicted RBP3.37□□□□□ -1.87
ZNF540-201ENST00000316433 KRTAP12-1P59990 96 aa3.33□□□□□ -1.88
ZNF540-201ENST00000316433 FAT3Q8TDW7 4589 aa3.32□□□□□ -1.88
ZNF540-201ENST00000316433 LRP1Q07954 4544 aaKnown RBP3.32□□□□□ -1.88
ZNF540-201ENST00000316433 DNHD1Q96M86 4753 aa3.32□□□□□ -1.88
ZNF540-201ENST00000316433 KRTAP10-8P60410 259 aa3.31□□□□□ -1.88
ZNF540-201ENST00000316433 PRO2289Q9P1D8 64 aa3.31□□□□□ -1.88
ZNF540-201ENST00000316433 HYDINQ4G0P3 5121 aa3.24□□□□□ -1.89
ZNF540-201ENST00000316433 LOC100996750A0A140TA64 210 aa3.23□□□□□ -1.89
ZNF540-201ENST00000316433 KRTAP4-6Q9BYQ5 205 aa3.23□□□□□ -1.89
ZNF540-201ENST00000316433 M0QZ58 72 aa3.23□□□□□ -1.89
ZNF540-201ENST00000316433 MYCBP2O75592 4640 aa3.21□□□□□ -1.9
ZNF540-201ENST00000316433 C9orf92A6NGG3 77 aa3.21□□□□□ -1.9
ZNF540-201ENST00000316433 MUC17Q685J3 4493 aa3.18□□□□□ -1.9
ZNF540-201ENST00000316433 R4GN34 69 aa3.18□□□□□ -1.9
ZNF540-201ENST00000316433 RYR2Q92736 4967 aa3.17□□□□□ -1.9
ZNF540-201ENST00000316433 INE1O15225 51 aa3.14□□□□□ -1.91
ZNF540-201ENST00000316433 PP632Q6XCG6 107 aa3.14□□□□□ -1.91
ZNF540-201ENST00000316433 SPRR5A0A1B0GTR4 108 aa3.11□□□□□ -1.91
ZNF540-201ENST00000316433 MT1HL1P0DM35 61 aa3.11□□□□□ -1.91
ZNF540-201ENST00000316433 FLGP20930 4061 aaPredicted RBP3.09□□□□□ -1.92
ZNF540-201ENST00000316433 RYR1P21817 5038 aa3.06□□□□□ -1.92
ZNF540-201ENST00000316433 SMR3BP02814 79 aaPredicted RBP3.05□□□□□ -1.92
ZNF540-201ENST00000316433 Q5VSD8 79 aa3.04□□□□□ -1.92
ZNF540-201ENST00000316433 HERC1Q15751 4861 aa3.02□□□□□ -1.93
ZNF540-201ENST00000316433 KRTAP19-2Q3LHN2 52 aa3.01□□□□□ -1.93
ZNF540-201ENST00000316433 KRTAP19-4Q3LI73 84 aa2.99□□□□□ -1.93
ZNF540-201ENST00000316433 PCLOQ9Y6V0 5065 aa2.96□□□□□ -1.94
ZNF540-201ENST00000316433 GPR98Q8WXG9 6306 aa2.93□□□□□ -1.94
ZNF540-201ENST00000316433 RYR3Q15413 4870 aa2.9□□□□□ -1.94
ZNF540-201ENST00000316433 HMCN1Q96RW7 5635 aa2.89□□□□□ -1.95
ZNF540-201ENST00000316433 KMT2CQ8NEZ4 4911 aaKnown RBP2.89□□□□□ -1.95
ZNF540-201ENST00000316433 KRTAP9-2Q9BYQ4 174 aa2.88□□□□□ -1.95
ZNF540-201ENST00000316433 BIRC6Q9NR09 4857 aa2.87□□□□□ -1.95
ZNF540-201ENST00000316433 TNP1P09430 55 aa2.85□□□□□ -1.95
ZNF540-201ENST00000316433 KIAA1109Q2LD37 5005 aa2.82□□□□□ -1.96
ZNF540-201ENST00000316433 SPRR2GQ9BYE4 73 aa2.82□□□□□ -1.96
ZNF540-201ENST00000316433 KRTAP9-7A8MTY7 169 aa2.81□□□□□ -1.96
ZNF540-201ENST00000316433 KRTAP4-1Q9BYQ7 146 aa2.79□□□□□ -1.96
ZNF540-201ENST00000316433 LRP2P98164 4655 aa2.78□□□□□ -1.96
ZNF540-201ENST00000316433 LPAP08519 4548 aa2.77□□□□□ -1.97
ZNF540-201ENST00000316433 KRTAP19-1Q8IUB9 90 aa2.76□□□□□ -1.97
ZNF540-201ENST00000316433 KRTAP4-8Q9BYQ9 185 aa2.74□□□□□ -1.97
ZNF540-201ENST00000316433 KRTAP4-12Q9BQ66 201 aa2.74□□□□□ -1.97
ZNF540-201ENST00000316433 KRTAP19-8Q3LI54 63 aa2.73□□□□□ -1.97
ZNF540-201ENST00000316433 MUC5BQ9HC84 5762 aaPredicted RBP2.73□□□□□ -1.97
ZNF540-201ENST00000316433 HERC2O95714 4834 aa2.71□□□□□ -1.98
ZNF540-201ENST00000316433 EPPK1P58107 5090 aaKnown RBP2.71□□□□□ -1.98
ZNF540-201ENST00000316433 KRTAP8-1Q8IUC2 63 aa2.7□□□□□ -1.98
ZNF540-201ENST00000316433 ABCA13Q86UQ4 5058 aa2.69□□□□□ -1.98
ZNF540-201ENST00000316433 KRTAP10-10P60014 251 aa2.68□□□□□ -1.98
ZNF540-201ENST00000316433 KRTAP4-5Q9BYR2 181 aa2.68□□□□□ -1.98
ZNF540-201ENST00000316433 LCE3AQ5TA76 89 aa2.63□□□□□ -1.99
ZNF540-201ENST00000316433 LCE4AQ5TA78 99 aa2.61□□□□□ -1.99
ZNF540-201ENST00000316433 KRTAP4-8A0A0G2JLE6 195 aa2.6□□□□□ -1.99
ZNF540-201ENST00000316433 KRTAP9-9Q9BYP9 154 aa2.6□□□□□ -1.99
ZNF540-201ENST00000316433 KRTAP9-4Q9BYQ2 154 aa2.6□□□□□ -1.99
ZNF540-201ENST00000316433 KRTAP4-7Q9BYR0 210 aa2.6□□□□□ -1.99
ZNF540-201ENST00000316433 KRTAP9-1A8MXZ3 250 aaPredicted RBP2.59□□□□□ -2
ZNF540-201ENST00000316433 KRTAP9-3Q9BYQ3 159 aa2.58□□□□□ -2
ZNF540-201ENST00000316433 KRTAP10-12P60413 245 aa2.57□□□□□ -2
ZNF540-201ENST00000316433 HMCN2Q8NDA2 5059 aa2.57□□□□□ -2
ZNF540-201ENST00000316433 MT1HP80294 61 aa2.56□□□□□ -2
ZNF540-201ENST00000316433 KRTAP9-8Q9BYQ0 159 aa2.56□□□□□ -2
ZNF540-201ENST00000316433 CRCT1Q9UGL9 99 aa2.55□□□□□ -2
ZNF540-201ENST00000316433 MT2AP02795 61 aa2.55□□□□□ -2
ZNF540-201ENST00000316433 KRTAP10-5P60370 271 aa2.53□□□□□ -2
ZNF540-201ENST00000316433 SSPOA2VEC9 5147 aa2.53□□□□□ -2
ZNF540-201ENST00000316433 MT1BP07438 61 aa2.53□□□□□ -2
ZNF540-201ENST00000316433 MT1XP80297 61 aa2.53□□□□□ -2.01
ZNF540-201ENST00000316433 LCE3BQ5TA77 95 aa2.52□□□□□ -2.01
ZNF540-201ENST00000316433 KRTAP5-3Q6L8H2 238 aa2.51□□□□□ -2.01
ZNF540-201ENST00000316433 MUC2Q02817 5179 aa2.51□□□□□ -2.01
ZNF540-201ENST00000316433 MT1FP04733 61 aa2.5□□□□□ -2.01
ZNF540-201ENST00000316433 UBR4Q5T4S7 5183 aa2.49□□□□□ -2.01
ZNF540-201ENST00000316433 KRTAP12-3P60328 96 aa2.48□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 54.3 ms