RNA–Protein interactions for RNA: ENST00000303450.4

HOXC9-201, Transcript of homeobox C9, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXC9, Length 1,516 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9-201ENST00000303450 NDUFC1O43677 76 aa11.57□□□□□ -0.56
HOXC9-201ENST00000303450 MT1FP04733 61 aa11.56□□□□□ -0.56
HOXC9-201ENST00000303450 KRTAP10-10P60014 251 aa11.56□□□□□ -0.56
HOXC9-201ENST00000303450 LCE2DQ5TA82 110 aaPredicted RBP11.56□□□□□ -0.56
HOXC9-201ENST00000303450 KRTAP9-2Q9BYQ4 174 aa11.55□□□□□ -0.56
HOXC9-201ENST00000303450 SPANXA2-OT1Q8N9U9 137 aa11.5□□□□□ -0.57
HOXC9-201ENST00000303450 ACYP2P14621 99 aa11.5□□□□□ -0.57
HOXC9-201ENST00000303450 CYSTM1Q9H1C7 97 aa11.38□□□□□ -0.59
HOXC9-201ENST00000303450 H7BZZ5 65 aa11.35□□□□□ -0.59
HOXC9-201ENST00000303450 KRTAP9-3Q9BYQ3 159 aa11.35□□□□□ -0.59
HOXC9-201ENST00000303450 CCDC179H3BU77 68 aa11.33□□□□□ -0.6
HOXC9-201ENST00000303450 CHKB-CPT1BH3BT56 60 aa11.31□□□□□ -0.6
HOXC9-201ENST00000303450 H0YAA0 97 aa11.27□□□□□ -0.61
HOXC9-201ENST00000303450 SPTSSBQ8NFR3 76 aa11.25□□□□□ -0.61
HOXC9-201ENST00000303450 ADM2Q7Z4H4 148 aa11.19□□□□□ -0.62
HOXC9-201ENST00000303450 LCE2BO14633 110 aa11.18□□□□□ -0.62
HOXC9-201ENST00000303450 COA5Q86WW8 74 aa11.15□□□□□ -0.62
HOXC9-201ENST00000303450 FSIP2Q5CZC0 6907 aa11.13□□□□□ -0.63
HOXC9-201ENST00000303450 USH2AO75445 5202 aa11.09□□□□□ -0.63
HOXC9-201ENST00000303450 CRIPTQ9P021 101 aa11.09□□□□□ -0.63
HOXC9-201ENST00000303450 KRTAP19-1Q8IUB9 90 aa11.06□□□□□ -0.64
HOXC9-201ENST00000303450 CRCT1Q9UGL9 99 aa11.03□□□□□ -0.64
HOXC9-201ENST00000303450 SPRR2GQ9BYE4 73 aa11.02□□□□□ -0.65
HOXC9-201ENST00000303450 ATP5EP56381 51 aaPredicted RBP11.01□□□□□ -0.65
HOXC9-201ENST00000303450 P0C880 135 aa11□□□□□ -0.65
HOXC9-201ENST00000303450 KRTAP3-2Q9BYR7 98 aa10.99□□□□□ -0.65
HOXC9-201ENST00000303450 KRTAP9-6A0A140TA67 174 aa10.96□□□□□ -0.65
HOXC9-201ENST00000303450 TMEM258P61165 79 aa10.94□□□□□ -0.66
HOXC9-201ENST00000303450 R4GN34 69 aa10.88□□□□□ -0.67
HOXC9-201ENST00000303450 SSPOA2VEC9 5147 aa10.86□□□□□ -0.67
HOXC9-201ENST00000303450 KRTAP19-8Q3LI54 63 aa10.84□□□□□ -0.67
HOXC9-201ENST00000303450 Q5VV11 94 aa10.84□□□□□ -0.67
HOXC9-201ENST00000303450 M0QZ58 72 aa10.81□□□□□ -0.68
HOXC9-201ENST00000303450 SEC61GP60059 68 aa10.77□□□□□ -0.69
HOXC9-201ENST00000303450 MT1BP07438 61 aa10.76□□□□□ -0.69
HOXC9-201ENST00000303450 SERP1Q9Y6X1 66 aa10.74□□□□□ -0.69
HOXC9-201ENST00000303450 PCP4P48539 62 aa10.72□□□□□ -0.69
HOXC9-201ENST00000303450 KRTAP19-6Q3LI70 58 aa10.68□□□□□ -0.7
HOXC9-201ENST00000303450 LINC01554Q52M75 96 aa10.64□□□□□ -0.71
HOXC9-201ENST00000303450 A0A1B0GU69 56 aa10.59□□□□□ -0.71
HOXC9-201ENST00000303450 FCGBPQ9Y6R7 5405 aaPredicted RBP10.55□□□□□ -0.72
HOXC9-201ENST00000303450 PLAC4Q8WY50 150 aa10.54□□□□□ -0.72
HOXC9-201ENST00000303450 A0A1B0GU33 70 aa10.51□□□□□ -0.73
HOXC9-201ENST00000303450 KRTAP13-4Q3LI77 160 aa10.51□□□□□ -0.73
HOXC9-201ENST00000303450 LINC01558Q9Y6Z2 57 aa10.47□□□□□ -0.73
HOXC9-201ENST00000303450 PRR15LQ9BU68 103 aa10.46□□□□□ -0.74
HOXC9-201ENST00000303450 A6NN06 94 aa10.45□□□□□ -0.74
HOXC9-201ENST00000303450 KRTAP10-5P60370 271 aa10.4□□□□□ -0.74
HOXC9-201ENST00000303450 SPATA8Q6RVD6 105 aa10.38□□□□□ -0.75
HOXC9-201ENST00000303450 A0A0D9SG42 100 aa10.3□□□□□ -0.76
HOXC9-201ENST00000303450 PRO2289Q9P1D8 64 aa10.29□□□□□ -0.76
HOXC9-201ENST00000303450 V9GYY9 64 aa10.25□□□□□ -0.77
HOXC9-201ENST00000303450 MT1XP80297 61 aa10.24□□□□□ -0.77
HOXC9-201ENST00000303450 KRTAP9-1A8MXZ3 250 aaPredicted RBP10.23□□□□□ -0.77
HOXC9-201ENST00000303450 SMIM26A0A096LP01 95 aa10.21□□□□□ -0.78
HOXC9-201ENST00000303450 RPS28P62857 69 aaKnown RBP10.21□□□□□ -0.78
HOXC9-201ENST00000303450 Q1T7F1 81 aa10.19□□□□□ -0.78
HOXC9-201ENST00000303450 SPINT4Q6UDR6 99 aa10.12□□□□□ -0.79
HOXC9-201ENST00000303450 A8MU10 97 aa10.12□□□□□ -0.79
HOXC9-201ENST00000303450 UQCR11O14957 56 aa10.12□□□□□ -0.79
HOXC9-201ENST00000303450 PSPHP1O15172 72 aa10.11□□□□□ -0.79
HOXC9-201ENST00000303450 CAMK2N1Q7Z7J9 78 aa10.11□□□□□ -0.79
HOXC9-201ENST00000303450 MACF1Q9UPN3 7388 aaKnown RBP10.11□□□□□ -0.79
HOXC9-201ENST00000303450 KRTAP12-1P59990 96 aa10.07□□□□□ -0.8
HOXC9-201ENST00000303450 KRTAP12-2P59991 146 aa10.01□□□□□ -0.81
HOXC9-201ENST00000303450 MIR22HGQ0VDD5 57 aa9.94□□□□□ -0.82
HOXC9-201ENST00000303450 KRTAP9-7A8MTY7 169 aa9.93□□□□□ -0.82
HOXC9-201ENST00000303450 SYNE2Q8WXH0 6885 aaKnown RBP9.92□□□□□ -0.82
HOXC9-201ENST00000303450 A6NED7 52 aa9.81□□□□□ -0.84
HOXC9-201ENST00000303450 KRTAP10-7P60409 375 aaPredicted RBP9.8□□□□□ -0.84
HOXC9-201ENST00000303450 KRTAP6-3Q3LI67 103 aa9.76□□□□□ -0.85
HOXC9-201ENST00000303450 KRTAP10-12P60413 245 aa9.73□□□□□ -0.85
HOXC9-201ENST00000303450 KMT2DO14686 5537 aa9.72□□□□□ -0.85
HOXC9-201ENST00000303450 K7ERS5 55 aa9.66□□□□□ -0.86
HOXC9-201ENST00000303450 KRTAP4-8A0A0G2JLE6 195 aa9.61□□□□□ -0.87
HOXC9-201ENST00000303450 KRTAP4-8Q9BYQ9 185 aa9.61□□□□□ -0.87
HOXC9-201ENST00000303450 KRTAP8-1Q8IUC2 63 aa9.61□□□□□ -0.87
HOXC9-201ENST00000303450 C10orf95Q9H7T3 257 aa9.57□□□□□ -0.88
HOXC9-201ENST00000303450 KRTAP5-9P26371 169 aa9.56□□□□□ -0.88
HOXC9-201ENST00000303450 CDC42SE1Q9NRR8 79 aa9.48□□□□□ -0.89
HOXC9-201ENST00000303450 TNP1P09430 55 aa9.46□□□□□ -0.89
HOXC9-201ENST00000303450 SPRR2FQ96RM1 72 aa9.45□□□□□ -0.9
HOXC9-201ENST00000303450 MUC12Q9UKN1 5478 aa9.4□□□□□ -0.9
HOXC9-201ENST00000303450 MDN1Q9NU22 5596 aa9.26□□□□□ -0.93
HOXC9-201ENST00000303450 NEBP20929 6669 aa9.22□□□□□ -0.93
HOXC9-201ENST00000303450 KRTAP25-1Q3LHN0 102 aa9.21□□□□□ -0.93
HOXC9-201ENST00000303450 LCE3AQ5TA76 89 aa9.18□□□□□ -0.94
HOXC9-201ENST00000303450 SPRR2EP22531 72 aa9.16□□□□□ -0.94
HOXC9-201ENST00000303450 SPRR2BP35325 72 aa9.16□□□□□ -0.94
HOXC9-201ENST00000303450 SPRR2AP35326 72 aa9.16□□□□□ -0.94
HOXC9-201ENST00000303450 KRTAP19-7Q3SYF9 63 aa9.15□□□□□ -0.95
HOXC9-201ENST00000303450 BRK1Q8WUW1 75 aa9.1□□□□□ -0.95
HOXC9-201ENST00000303450 ROMO1P60602 79 aa9.1□□□□□ -0.95
HOXC9-201ENST00000303450 KRTAP19-5Q3LI72 72 aa9.1□□□□□ -0.95
HOXC9-201ENST00000303450 LCE1AQ5T7P2 110 aa9.1□□□□□ -0.95
HOXC9-201ENST00000303450 MT1EP04732 61 aa9.04□□□□□ -0.96
HOXC9-201ENST00000303450 KRTAP23-1A1A580 65 aa8.88□□□□□ -0.99
HOXC9-201ENST00000303450 SPRR2DP22532 72 aa8.85□□□□□ -0.99
HOXC9-201ENST00000303450 KRTAP12-3P60328 96 aa8.85□□□□□ -0.99
HOXC9-201ENST00000303450 KRTAP19-3Q7Z4W3 81 aa8.85□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 91.7 ms