RNA–Protein interactions for RNA: ENST00000302516.9

SF3B3-201, Transcript of splicing factor 3b subunit 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B3, Length 9,720 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-201ENST00000302516 CRCT1Q9UGL9 99 aa3.16□□□□□ -1.9
SF3B3-201ENST00000302516 KRTAP19-4Q3LI73 84 aa3.11□□□□□ -1.91
SF3B3-201ENST00000302516 MUC3AQ02505 3323 aa3.11□□□□□ -1.91
SF3B3-201ENST00000302516 DNAH1Q9P2D7 4330 aa3.09□□□□□ -1.91
SF3B3-201ENST00000302516 HECTD4Q9Y4D8 3996 aa3.08□□□□□ -1.92
SF3B3-201ENST00000302516 KRTAP8-1Q8IUC2 63 aa3.07□□□□□ -1.92
SF3B3-201ENST00000302516 CSMD3Q7Z407 3707 aa3.07□□□□□ -1.92
SF3B3-201ENST00000302516 KRTAP10-5P60370 271 aa3.07□□□□□ -1.92
SF3B3-201ENST00000302516 LORP23490 312 aaPredicted RBP3.07□□□□□ -1.92
SF3B3-201ENST00000302516 SPRR2GQ9BYE4 73 aa3.04□□□□□ -1.92
SF3B3-201ENST00000302516 DNAH6Q9C0G6 4158 aa3.03□□□□□ -1.92
SF3B3-201ENST00000302516 LYSTQ99698 3801 aa3.02□□□□□ -1.93
SF3B3-201ENST00000302516 KRTAP4-5Q9BYR2 181 aa3.01□□□□□ -1.93
SF3B3-201ENST00000302516 DNAH2Q9P225 4427 aa3.01□□□□□ -1.93
SF3B3-201ENST00000302516 ZNF469Q96JG9 3925 aaPredicted RBP3.01□□□□□ -1.93
SF3B3-201ENST00000302516 CSMD2Q7Z408 3487 aa3.01□□□□□ -1.93
SF3B3-201ENST00000302516 ANK2Q01484 3957 aa2.98□□□□□ -1.93
SF3B3-201ENST00000302516 LCE3CQ5T5A8 94 aa2.96□□□□□ -1.94
SF3B3-201ENST00000302516 MT1HP80294 61 aa2.92□□□□□ -1.94
SF3B3-201ENST00000302516 VPS13BQ7Z7G8 4022 aa2.91□□□□□ -1.94
SF3B3-201ENST00000302516 KRTAP19-5Q3LI72 72 aa2.89□□□□□ -1.95
SF3B3-201ENST00000302516 KRTAP10-7P60409 375 aaPredicted RBP2.89□□□□□ -1.95
SF3B3-201ENST00000302516 MT2AP02795 61 aa2.89□□□□□ -1.95
SF3B3-201ENST00000302516 KRTAP4-1Q9BYQ7 146 aa2.87□□□□□ -1.95
SF3B3-201ENST00000302516 DNAH10Q8IVF4 4471 aa2.85□□□□□ -1.95
SF3B3-201ENST00000302516 KMT2AQ03164 3969 aa2.85□□□□□ -1.95
SF3B3-201ENST00000302516 PRKDCP78527 4128 aaKnown RBP2.83□□□□□ -1.96
SF3B3-201ENST00000302516 DNAH11Q96DT5 4516 aa2.82□□□□□ -1.96
SF3B3-201ENST00000302516 DYNC2H1Q8NCM8 4307 aaKnown RBP2.81□□□□□ -1.96
SF3B3-201ENST00000302516 FAT2Q9NYQ8 4349 aa2.81□□□□□ -1.96
SF3B3-201ENST00000302516 DNAH9Q9NYC9 4486 aa2.81□□□□□ -1.96
SF3B3-201ENST00000302516 MT1FP04733 61 aa2.81□□□□□ -1.96
SF3B3-201ENST00000302516 FRAS1Q86XX4 4008 aa2.8□□□□□ -1.96
SF3B3-201ENST00000302516 SPRR2FQ96RM1 72 aa2.78□□□□□ -1.97
SF3B3-201ENST00000302516 VPS13DQ5THJ4 4388 aa2.77□□□□□ -1.97
SF3B3-201ENST00000302516 SPRR5A0A1B0GTR4 108 aa2.77□□□□□ -1.97
SF3B3-201ENST00000302516 KRTAP19-8Q3LI54 63 aa2.77□□□□□ -1.97
SF3B3-201ENST00000302516 DNAH17Q9UFH2 4485 aa2.7□□□□□ -1.98
SF3B3-201ENST00000302516 PKHD1P08F94 4074 aa2.69□□□□□ -1.98
SF3B3-201ENST00000302516 DYNC1H1Q14204 4646 aaKnown RBP2.69□□□□□ -1.98
SF3B3-201ENST00000302516 FLGP20930 4061 aaPredicted RBP2.69□□□□□ -1.98
SF3B3-201ENST00000302516 DNAH5Q8TE73 4624 aa2.68□□□□□ -1.98
SF3B3-201ENST00000302516 STARD9Q9P2P6 4700 aa2.68□□□□□ -1.98
SF3B3-201ENST00000302516 MT1XP80297 61 aa2.68□□□□□ -1.98
SF3B3-201ENST00000302516 KRTAP19-1Q8IUB9 90 aa2.67□□□□□ -1.98
SF3B3-201ENST00000302516 DNAH8Q96JB1 4490 aa2.66□□□□□ -1.98
SF3B3-201ENST00000302516 KRTAP12-4P60329 112 aa2.66□□□□□ -1.98
SF3B3-201ENST00000302516 LCE3BQ5TA77 95 aa2.64□□□□□ -1.99
SF3B3-201ENST00000302516 PLECQ15149 4684 aaKnown RBP2.64□□□□□ -1.99
SF3B3-201ENST00000302516 LRP1Q07954 4544 aaKnown RBP2.61□□□□□ -1.99
SF3B3-201ENST00000302516 SPRR2EP22531 72 aa2.6□□□□□ -1.99
SF3B3-201ENST00000302516 SPRR2BP35325 72 aa2.6□□□□□ -1.99
SF3B3-201ENST00000302516 SPRR2AP35326 72 aa2.6□□□□□ -1.99
SF3B3-201ENST00000302516 MT1GP13640 62 aa2.59□□□□□ -1.99
SF3B3-201ENST00000302516 LCE3DQ9BYE3 92 aa2.57□□□□□ -2
SF3B3-201ENST00000302516 LCE2BO14633 110 aa2.57□□□□□ -2
SF3B3-201ENST00000302516 MT1BP07438 61 aa2.56□□□□□ -2
SF3B3-201ENST00000302516 LCE3EQ5T5B0 92 aa2.55□□□□□ -2
SF3B3-201ENST00000302516 SPRR2DP22532 72 aa2.54□□□□□ -2
SF3B3-201ENST00000302516 PKHD1L1Q86WI1 4243 aa2.54□□□□□ -2
SF3B3-201ENST00000302516 KRTAP9-8Q9BYQ0 159 aa2.52□□□□□ -2.01
SF3B3-201ENST00000302516 LRP1BQ9NZR2 4599 aa2.52□□□□□ -2.01
SF3B3-201ENST00000302516 MT1LQ93083 61 aa2.51□□□□□ -2.01
SF3B3-201ENST00000302516 KRTAP9-3Q9BYQ3 159 aa2.49□□□□□ -2.01
SF3B3-201ENST00000302516 KRTAP19-3Q7Z4W3 81 aa2.47□□□□□ -2.01
SF3B3-201ENST00000302516 APOBP04114 4563 aaKnown RBP2.46□□□□□ -2.02
SF3B3-201ENST00000302516 PKD1P98161 4303 aa2.45□□□□□ -2.02
SF3B3-201ENST00000302516 HSPG2P98160 4391 aa2.45□□□□□ -2.02
SF3B3-201ENST00000302516 SACSQ9NZJ4 4579 aa2.45□□□□□ -2.02
SF3B3-201ENST00000302516 MT1EP04732 61 aa2.43□□□□□ -2.02
SF3B3-201ENST00000302516 RYR1P21817 5038 aa2.42□□□□□ -2.02
SF3B3-201ENST00000302516 LCE2CQ5TA81 110 aa2.42□□□□□ -2.02
SF3B3-201ENST00000302516 FAT1Q14517 4588 aa2.41□□□□□ -2.02
SF3B3-201ENST00000302516 TNXBP22105 4242 aa2.4□□□□□ -2.03
SF3B3-201ENST00000302516 KRTAP4-8A0A0G2JLE6 195 aa2.4□□□□□ -2.03
SF3B3-201ENST00000302516 KRTAP4-8Q9BYQ9 185 aa2.4□□□□□ -2.03
SF3B3-201ENST00000302516 DNHD1Q96M86 4753 aa2.4□□□□□ -2.03
SF3B3-201ENST00000302516 MT3P25713 68 aa2.38□□□□□ -2.03
SF3B3-201ENST00000302516 RYR3Q15413 4870 aa2.36□□□□□ -2.03
SF3B3-201ENST00000302516 MT1MQ8N339 61 aa2.35□□□□□ -2.03
SF3B3-201ENST00000302516 PRM1P04553 51 aa2.34□□□□□ -2.03
SF3B3-201ENST00000302516 FAT3Q8TDW7 4589 aa2.34□□□□□ -2.04
SF3B3-201ENST00000302516 KRTAP17-1Q9BYP8 105 aa2.33□□□□□ -2.04
SF3B3-201ENST00000302516 MYCBP2O75592 4640 aa2.33□□□□□ -2.04
SF3B3-201ENST00000302516 KRTAP19-2Q3LHN2 52 aa2.3□□□□□ -2.04
SF3B3-201ENST00000302516 KRTAP2-3P0C7H8 128 aa2.29□□□□□ -2.04
SF3B3-201ENST00000302516 KRTAP2-4Q9BYR9 128 aa2.29□□□□□ -2.04
SF3B3-201ENST00000302516 KRTAP2-1Q9BYU5 128 aa2.29□□□□□ -2.04
SF3B3-201ENST00000302516 PCLOQ9Y6V0 5065 aa2.29□□□□□ -2.04
SF3B3-201ENST00000302516 RYR2Q92736 4967 aa2.29□□□□□ -2.04
SF3B3-201ENST00000302516 LCE2DQ5TA82 110 aaPredicted RBP2.29□□□□□ -2.04
SF3B3-201ENST00000302516 KRTAP19-6Q3LI70 58 aa2.27□□□□□ -2.05
SF3B3-201ENST00000302516 KRTAP4-7Q9BYR0 210 aa2.27□□□□□ -2.05
SF3B3-201ENST00000302516 MT1AP04731 61 aa2.25□□□□□ -2.05
SF3B3-201ENST00000302516 KIAA1109Q2LD37 5005 aa2.2□□□□□ -2.06
SF3B3-201ENST00000302516 MUC17Q685J3 4493 aa2.19□□□□□ -2.06
SF3B3-201ENST00000302516 LOC100996750A0A140TA64 210 aa2.19□□□□□ -2.06
SF3B3-201ENST00000302516 MT4P47944 62 aa2.17□□□□□ -2.06
SF3B3-201ENST00000302516 KRTAP19-7Q3SYF9 63 aa2.16□□□□□ -2.06
SF3B3-201ENST00000302516 LCE1DQ5T752 114 aa2.15□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 52.5 ms